Add description about 2.8

fix/xss by raw html

.travis.yml

@@ -0,0 +1,3 @@
+language: scala
+scala:
+  - 2.11.2

README.md

@@ -1,7 +1,7 @@
-GitBucket [![Gitter chat](https://badges.gitter.im/takezoe/gitbucket.png)](https://gitter.im/takezoe/gitbucket) [![Build Status](https://buildhive.cloudbees.com/job/takezoe/job/gitbucket/badge/icon)](https://buildhive.cloudbees.com/job/takezoe/job/gitbucket/)
+GitBucket [![Gitter chat](https://badges.gitter.im/takezoe/gitbucket.png)](https://gitter.im/takezoe/gitbucket) [![Build Status](https://travis-ci.org/takezoe/gitbucket.svg?branch=master)](https://travis-ci.org/takezoe/gitbucket)
 =========
 
-GitBucket is the easily installable Github clone written with Scala.
+GitBucket is the easily installable GitHub clone powered by Scala.
 
 
 Features
@@ -23,7 +23,6 @@ The current version of GitBucket provides a basic features below:
 
 Following features are not implemented, but we will make them in the future release!
 
-- Comment for the changeset
 - Network graph
 - Statistics
 - Watch / Star
@@ -80,6 +79,50 @@ Run the following commands in `Terminal` to
 
 Release Notes
 --------
+### 2.8 - 1 Feb 2015
+- New logo and icons
+- New system setting options to control visibility
+- Comment on side-by-side diff
+- Information message on sign-in page
+- Fork repository by group account
+
+### 2.7 - 29 Dec 2014
+- Comment for commit and diff
+- Fix security issue in markdown rendering
+- Some bug fix and improvements
+
+### 2.6 - 24 Nov 2014
+- Search box at issues and pull requests
+- Information from administrator
+- Pull request UI has been updated
+- Move to TravisCI from Buildhive
+- Some bug fix and improvements
+
+### 2.5 - 4 Nov 2014
+- New Dashboard
+- Change datetime format
+- Create branch from Web UI
+- Task list in Markdown
+- Some bug fix and improvements
+
+### 2.4.1 - 6 Oct 2014
+- Bug fix
+
+### 2.4 - 6 Oct 2014
+- New UI is applied to Issues and Pull requests
+- Side-by-side diff is available
+- Fix relative path problem in Markdown links and images
+- Plugin System is disabled in default
+- Some bug fix and improvements
+
+### 2.3 - 1 Sep 2014
+- Scala based plugin system
+- Embedded Jetty war extraction directory moved to `GITBUCKET_HOME/tmp`
+- Some bug fix and improvements
+
+### 2.2.1 - 5 Aug 2014
+- Bug fix
+
 ### 2.2 - 4 Aug 2014
 - Plug-in system is available
 - Move to Scala 2.11, Scalatra 2.3 and Slick 2.1

contrib/README.md

@@ -0,0 +1,13 @@
+# Contrib Notes #
+
+The configuration script adapts according to the OS.
+The `linux` directory contains scripts for Ubuntu and RedHat.
+The Mac scripts have been folded in as well.
+Common scripts are in this directory.
+
+This version of scripts has so far only been tested on Ubuntu and Mac. Someone else will have to test on RedHat.
+
+To run:
+
+  1. Edit `gitbucket.conf` to suit.
+  2. Type: `install`

contrib/gitbucket.conf

@@ -0,0 +1,62 @@
+# Configuration section is below. Ignore this part
+
+function isUbuntu {
+  if [ -f /etc/lsb-release ]; then
+    grep -i ubuntu /etc/lsb-release | head -n 1 | cut -d \  -f 1 | cut -d = -f 2
+  fi
+}
+
+function isRedHat {
+  if [ -d "/etc/rc.d/init.d" ]; then echo yes; fi
+}
+
+function isMac {
+  if [[ "$(uname -a | cut -d \  -f 1 )" == "Darwin" ]]; then echo yes; fi
+}
+
+# 
+# Configuration section start
+#
+
+# Bind host
+GITBUCKET_HOST=0.0.0.0
+
+# Other Java option
+GITBUCKET_JVM_OPTS=-Dmail.smtp.starttls.enable=true
+
+# Data directory, holds repositories
+GITBUCKET_HOME=/var/lib/gitbucket
+
+GITBUCKET_LOG_DIR=/var/log/gitbucket
+
+# Server port
+GITBUCKET_PORT=8080
+
+# URL prefix for the GitBucket page (http://<host>:<port>/<prefix>/)
+GITBUCKET_PREFIX=
+
+# Directory where GitBucket is installed
+# Configuration is stored here:
+GITBUCKET_DIR=/usr/share/gitbucket
+GITBUCKET_WAR_DIR=$GITBUCKET_DIR/lib
+
+# Path to the WAR file
+GITBUCKET_WAR_FILE=$GITBUCKET_WAR_DIR/gitbucket.war
+
+# GitBucket version to fetch when installing
+GITBUCKET_VERSION=2.1
+
+#
+# End of configuration section. Ignore this part
+#
+if [ `isUbuntu` ]; then
+  GITBUCKET_SERVICE=/etc/init.d/gitbucket
+elif [ `isRedHat` ]; then
+  GITBUCKET_SERVICE=/etc/rc.d/init.d
+elif [ `isMac` ]; then
+  GITBUCKET_SERVICE=/Library/StartupItems/GitBucket/GitBucket
+else
+  echo "Don't know how to install onto this OS"
+  exit -2
+fi
+

contrib/gitbucket.init

@@ -1,6 +1,8 @@
 #!/bin/bash
 #
-# /etc/rc.d/init.d/gitbucket
+# RedHat: /etc/rc.d/init.d/gitbucket
+# Ubuntu: /etc/init.d/gitbucket
+# Mac OS/X: /Library/StartupItems/GitBucket
 #
 # Starts the GitBucket server
 #
@@ -8,28 +10,44 @@
 # description: Run GitBucket server
 # processname: java
 
-# Source function library
-. /etc/rc.d/init.d/functions
+set -e
+
+[ -f /etc/rc.d/init.d/functions ] && source /etc/rc.d/init.d/functions  # RedHat
+[ -f /etc/rc.common ] && source /etc/rc.common # Mac OS/X
 
 # Default values
 GITBUCKET_HOME=/var/lib/gitbucket
 GITBUCKET_WAR_FILE=/usr/share/gitbucket/lib/gitbucket.war
 
 # Pull in cq settings
-[ -f /etc/sysconfig/gitbucket ] && . /etc/sysconfig/gitbucket
+[ -f /etc/sysconfig/gitbucket ] && source /etc/sysconfig/gitbucket # RedHat
+[ -f gitbucket.conf ] && source gitbucket.conf  # For all systems
 
 # Location of the log and PID file
-LOG_FILE=/var/log/gitbucket/run.log
+LOG_FILE=$GITBUCKET_LOG_DIR/run.log
 PID_FILE=/var/run/gitbucket.pid
 
-# Default return value
-RETVAL=0
+RED='\033[1m\E[37;41m'
+GREEN='\033[1m\E[37;42m'
+OFF='\E[0m'
 
+if [ -z "$(which success)" ]; then
+	function success {
+	  printf "%b\n" "$GREEN $* $OFF"
+  }
+fi
+if [ -z "$(which failure)" ]; then
+	function failure {
+	  printf "%b\n" "$RED $* $OFF"
+  }
+fi
+
+RETVAL=0
 
 start() {
 	echo -n $"Starting GitBucket server: "
 
-	# Compile statup parameters
+  START_OPTS=
 	if [ $GITBUCKET_PORT ]; then
 		START_OPTS="${START_OPTS} --port=${GITBUCKET_PORT}"
 	fi
@@ -40,17 +58,15 @@ start() {
 		START_OPTS="${START_OPTS} --host=${GITBUCKET_HOST}"
 	fi
 
-	# Run the Java process
 	GITBUCKET_HOME="${GITBUCKET_HOME}" java $GITBUCKET_JVM_OPTS -jar $GITBUCKET_WAR_FILE $START_OPTS >>$LOG_FILE 2>&1 &
 	RETVAL=$?
 
-	# Store PID of the Java process into a file
 	echo $! > $PID_FILE
 
 	if [ $RETVAL -eq 0 ] ; then
-		success "GitBucket startup"
+		success "Success"
 	else
-		failure "GitBucket startup"
+		failure "Exit code $RETVAL"
 	fi
 
 	echo
@@ -82,25 +98,41 @@ restart() {
 	start
 }
 
+## MacOS proxies for System V service hooks:
+StartService() {
+	start
+}
 
-case "$1" in
-start)
+StopService() {
+	stop
+}
+
+RestartService() {
+	restart
+}
+
+
+if [ `isMac` ]; then
+  RunService "$1"
+else
+	case "$1" in
+		start)
 			start
 			;;
-stop)
+		stop)
 			stop
 			;;
-restart)
+		restart)
 			restart
 			;;
-status)
+		status)
 			status -p $PID_FILE java
 			RETVAL=$?
 			;;
-*)
+		*)
 			echo $"Usage: $0 [start|stop|restart|status]"
 			RETVAL=2
-esac
+	esac
+  exit $RETVAL
+fi
 
-
-exit $RETVAL

contrib/install

@@ -0,0 +1,69 @@
+#!/bin/bash
+
+# Only tested on Ubuntu 14.04
+
+# Uses information stored in GitBucket git repo on GitHub as defaults.
+# Edit gitbucket.conf before running this
+
+set -e
+
+GITBUCKET_VERSION=2.1
+
+if [ ! -f gitbucket.conf ]; then
+  echo "gitbucket.conf not found, aborting"
+  exit -3
+fi
+source gitbucket.conf
+
+function createDir {
+  if [ ! -d "$1" ]; then
+    echo "Making $1 directory."
+    sudo mkdir -p "$1"
+  fi
+}
+
+if [ "$(which iptables)" ]; then
+  echo "Opening port $GITBUCKET_PORT in firewall."
+  sudo iptables -A INPUT -p tcp --dport $GITBUCKET_PORT -j ACCEPT
+  echo "Please use iptables-persistent:"
+  echo "  sudo apt-get install iptables-persistent"
+  echo "After installed, you can save/reload iptables rules anytime:"
+  echo "  sudo /etc/init.d/iptables-persistent save"
+  echo "  sudo /etc/init.d/iptables-persistent reload"
+fi
+
+createDir "$GITBUCKET_HOME"
+createDir "$GITBUCKET_WAR_DIR"
+createDir "$GITBUCKET_DIR"
+createDir "$GITBUCKET_LOG_DIR"
+
+echo "Fetching GitBucket v$GITBUCKET_VERSION and saving as $GITBUCKET_WAR_FILE"
+sudo wget -qO "$GITBUCKET_WAR_FILE" https://github.com/takezoe/gitbucket/releases/download/$GITBUCKET_VERSION/gitbucket.war
+
+sudo rm -f "$GITBUCKET_LOG_DIR/run.log"
+
+echo "Copying gitbucket.conf to $GITBUCKET_DIR"
+sudo cp gitbucket.conf $GITBUCKET_DIR
+if [ `isUbuntu` ] || [ `isRedHat` ]; then
+  sudo cp gitbucket.init "$GITBUCKET_SERVICE"
+  # Install gitbucket as a service that starts when system boots
+  sudo chown root:root $GITBUCKET_SERVICE
+  sudo chmod 755 $GITBUCKET_SERVICE
+  sudo update-rc.d "$(basename $GITBUCKET_SERVICE)" defaults 98 02
+  echo "Starting GitBucket service"
+  sudo $GITBUCKET_SERVICE start
+elif [ `isMac` ]; then
+  sudo macosx/makePlist
+  echo "Starting GitBucket service"
+  sudo cp gitbucket.conf "$GITBUCKET_SERVICE"
+  sudo cp gitbucket.init "$GITBUCKET_SERVICE"
+  sudo chmod a+x "$GITBUCKET_SERVICE"
+  sudo "$GITBUCKET_SERVICE" start
+else
+  echo "Don't know how to install this OS"
+  exit -2
+fi
+
+if [ $? != 0 ]; then
+  less "$GITBUCKET_LOG_DIR/run.log"
+fi

contrib/linux/redhat/README.md

@@ -0,0 +1,15 @@
+# Contrib Notes #
+
+RPM spec file and init script for Red Hat Enterprise Linux 6.x. 
+
+To create RPM:
+1. Edit `../../gitbucket.conf` to suit.
+2. Edit `gitbucket.init` to suit.
+3. Edit `gitbucket.spec` to suit.
+4. Place `gitbucket.spec` to rpm/SPECS/.
+5. Place `gitbucket.init` and `gitbucket.war` to rpm/SOURCES/.
+6. Execute `rpmbuild -ba rpm/SPECS/gitbucket.spec`
+
+This rpm runs gitbucket not as root user but as gitbucket user.
+This rpm creates user and group named `gitbucket` at installation.
+This rpm make chkconfig of gitbucket to be on.

contrib/linux/redhat/gitbucket.init

@@ -0,0 +1,108 @@
+#!/bin/bash
+#
+# RedHat: /etc/rc.d/init.d/gitbucket
+#
+# Starts the GitBucket server
+#
+# chkconfig: 345 60 40
+# description: Run GitBucket server
+# processname: java
+
+[ -f /etc/rc.d/init.d/functions ] && source /etc/rc.d/init.d/functions  # RedHat
+
+# Default values
+GITBUCKET_HOME=/var/lib/gitbucket
+GITBUCKET_WAR_FILE=/usr/share/gitbucket/lib/gitbucket.war
+
+# Pull in cq settings
+[ -f /etc/sysconfig/gitbucket ] && source /etc/sysconfig/gitbucket # RedHat
+[ -f gitbucket.conf ] && source gitbucket.conf  # For all systems
+
+# Location of the log and PID file
+LOG_FILE=$GITBUCKET_LOG_DIR/run.log
+
+RED='\033[1m\E[37;41m'
+GREEN='\033[1m\E[37;42m'
+OFF='\E[0m'
+
+RETVAL=0
+
+start() {
+	echo -n $"Starting GitBucket server: "
+
+  START_OPTS=
+	if [ $GITBUCKET_PORT ]; then
+		START_OPTS="${START_OPTS} --port=${GITBUCKET_PORT}"
+	fi
+	if [ $GITBUCKET_PREFIX ]; then
+		START_OPTS="${START_OPTS} --prefix=${GITBUCKET_PREFIX}"
+	fi
+	if [ $GITBUCKET_HOST ]; then
+		START_OPTS="${START_OPTS} --host=${GITBUCKET_HOST}"
+	fi
+
+	GITBUCKET_HOME="${GITBUCKET_HOME}" daemon --user=gitbucket java $GITBUCKET_JVM_OPTS -jar $GITBUCKET_WAR_FILE $START_OPTS >>$LOG_FILE 2>&1 &
+  sleep 3
+  pgrep -f $GITBUCKET_WAR_FILE >> $LOG_FILE 2>&1
+  RETVAL=$?
+
+	if [ $RETVAL -eq 0 ] ; then
+		success "Success"
+	else
+		failure "Exit code $RETVAL"
+	fi
+
+	echo
+	return $RETVAL
+}
+
+
+stop() {
+	echo -n $"Stopping GitBucket server: "
+
+	# Run the Java process
+	pkill -f $GITBUCKET_WAR_FILE >>$LOG_FILE 2>&1
+	RETVAL=$?
+
+	if [ $RETVAL -eq 0 ] ; then
+		success "GitBucket stopping"
+	else
+		failure "GitBucket stopping"
+	fi
+
+	echo
+	return $RETVAL
+}
+
+
+restart() {
+	stop
+	start
+}
+
+case "$1" in
+	start)
+		start
+		;;
+	stop)
+		stop
+		;;
+	restart)
+		restart
+		;;
+	status)
+    pgrep -f $GITBUCKET_WAR_FILE >> $LOG_FILE 2>&1
+		RETVAL=$?
+    if [ $RETVAL -eq 0 ]; then
+      echo $"GitBucket is running...."
+    else
+      echo $"GitBucket is stopped"
+    fi
+		;;
+	*)
+		echo $"Usage: $0 [start|stop|restart|status]"
+		RETVAL=2
+esac
+
+exit $RETVAL
+

contrib/linux/redhat/gitbucket.spec

@@ -1,6 +1,6 @@
 Name:		gitbucket
 Summary:	GitHub clone written with Scala.
-Version:	1.7
+Version:	2.6
 Release:	1%{?dist}
 License:	Apache
 URL:		https://github.com/takezoe/gitbucket
@@ -26,6 +26,25 @@ GitBucket is the easily installable GitHub clone written with Scala.
 %{__install} -m 0644 %{SOURCE2} %{buildroot}%{_sysconfdir}/sysconfig/%{name}
 touch %{buildroot}%{_localstatedir}/log/%{name}/run.log
 
+%pre
+/usr/sbin/groupadd -r gitbucket &> /dev/null || :
+/usr/sbin/useradd -g gitbucket -s /bin/false -r -c "GitBucket GitHub clone" -d %{_sharedstatedir}/%{name} gitbucket &> /dev/null || :
+
+%post
+/sbin/chkconfig --add gitbucket
+
+%preun
+if [ "$1" = 0 ]; then
+  /sbin/service gitbucket stop > /dev/null 2>&1
+  /sbin/chkconfig --del gitbucket
+fi
+exit 0
+
+%postun
+if [ "$1" -ge 1 ]; then
+  /sbin/service gitbucket restart > /dev/null 2>&1
+fi
+exit 0
 
 %clean
 [ "%{buildroot}" != / ] && %{__rm} -rf "%{buildroot}"
@@ -34,12 +53,28 @@ touch %{buildroot}%{_localstatedir}/log/%{name}/run.log
 %files
 %defattr(-,root,root,-)
 %{_datarootdir}/%{name}/lib/%{name}.war
-%{_sysconfdir}/init.d/%{name}
-%config %{_sysconfdir}/sysconfig/%{name}
-%{_localstatedir}/log/%{name}/run.log
+%config %{_sysconfdir}/init.d/%{name}
+%config(noreplace) %{_sysconfdir}/sysconfig/%{name}
+%attr(0755,gitbucket,gitbucket) %{_sharedstatedir}/%{name}
+%attr(0750,gitbucket,gitbucket) %{_localstatedir}/log/%{name}
 
 
 %changelog
+* Mon Nov 24 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.6
+
+* Sun Nov 09 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.5
+
+* Sun Oct 26 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.4.1
+
+* Mon Jul 21 2014 Toru Takahashi <torutk at gmail.com>
+- execute as gitbucket user
+
+* Sun Jul 20 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.1.
+
 * Mon Oct 28 2013 Jiri Tyr <jiri_DOT_tyr at gmail.com>
 - Version bump to v1.7.
 

contrib/macosx/makePlist

@@ -1,3 +1,10 @@
+#!/bin/bash
+
+# From http://docstore.mik.ua/orelly/unix3/mac/ch02_02.htm
+source gitbucket.conf
+GITBUCKET_SERVICE_DIR=`dirname "$GITBUCKET_SERVICE"`
+mkdir -p "$GITBUCKET_SERVICE_DIR"
+cat << EOF > "$GITBUCKET_SERVICE_DIR/gitbucket.plist"
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
 <plist version="1.0">
@@ -7,14 +14,15 @@
     <key>ProgramArguments</key>
     <array>
       <string>/usr/bin/java</string>
-      <string>-Dmail.smtp.starttls.enable=true</string>
+      <string>$GITBUCKET_JVM_OPTS</string>
       <string>-jar</string>
       <string>gitbucket.war</string>
-      <string>--host=127.0.0.1</string>
-      <string>--port=8080</string>
+      <string>--host=$GITBUCKET_HOST</string>
+      <string>--port=$GITBUCKET_PORT</string>
       <string>--https=true</string>
     </array>
     <key>RunAtLoad</key>
     <true/>
   </dict>
 </plist>
+EOF

contrib/redhat/gitbucket.conf

@@ -1,17 +0,0 @@
-# Bind host
-#GITBUCKET_HOST=0.0.0.0
-
-# Server port
-#GITBUCKET_PORT=8080
-
-# Data directory (GITBUCKET_HOME/gitbucket)
-#GITBUCKET_HOME=/var/lib/gitbucket
-
-# Path to the WAR file
-#GITBUCKET_WAR_FILE=/usr/share/gitbucket/lib/gitbucket.war
-
-# URL prefix for the GitBucket page (http://<host>:<port>/<prefix>/)
-#GITBUCKET_PREFIX=
-
-# Other Java option
-#GITBUCKET_JVM_OPTS=

project/build.properties

@@ -1 +1 @@
-sbt.version=0.13.1
+sbt.version=0.13.5

project/build.scala

@@ -1,8 +1,9 @@
 import sbt._
 import Keys._
 import org.scalatra.sbt._
-import twirl.sbt.TwirlPlugin._
 import com.typesafe.sbteclipse.plugin.EclipsePlugin.EclipseKeys
+import play.twirl.sbt.SbtTwirl
+import play.twirl.sbt.Import.TwirlKeys._
 
 object MyBuild extends Build {
   val Organization = "jp.sf.amateras"
@@ -13,8 +14,10 @@ object MyBuild extends Build {
 
   lazy val project = Project (
     "gitbucket",
-    file("."),
-    settings = Defaults.defaultSettings ++ ScalatraPlugin.scalatraWithJRebel ++ Seq(
+    file(".")
+  )
+  .settings(ScalatraPlugin.scalatraWithJRebel: _*)
+  .settings(
     sourcesInBase := false,
     organization := Organization,
     name := Name,
@@ -39,20 +42,18 @@ object MyBuild extends Build {
       "org.apache.commons" % "commons-email" % "1.3.1",
       "org.apache.httpcomponents" % "httpclient" % "4.3",
       "org.apache.sshd" % "apache-sshd" % "0.11.0",
-        "com.typesafe.slick" %% "slick" % "2.1.0-RC3",
-        "org.mozilla" % "rhino" % "1.7R4",
+      "com.typesafe.slick" %% "slick" % "2.1.0",
       "com.novell.ldap" % "jldap" % "2009-10-07",
-        "org.quartz-scheduler" % "quartz" % "2.2.1",
       "com.h2database" % "h2" % "1.4.180",
       "ch.qos.logback" % "logback-classic" % "1.0.13" % "runtime",
       "org.eclipse.jetty" % "jetty-webapp" % "8.1.8.v20121106" % "container;provided",
       "org.eclipse.jetty.orbit" % "javax.servlet" % "3.0.0.v201112011016" % "container;provided;test" artifacts Artifact("javax.servlet", "jar", "jar"),
-        "junit" % "junit" % "4.11" % "test"
+      "junit" % "junit" % "4.11" % "test",
+      "com.typesafe.play" %% "twirl-compiler" % "1.0.2"
     ),
     EclipseKeys.withSource := true,
-      javacOptions in compile ++= Seq("-target", "6", "-source", "6"),
+    javacOptions in compile ++= Seq("-target", "7", "-source", "7"),
     testOptions in Test += Tests.Argument(TestFrameworks.Specs2, "junitxml", "console"),
     packageOptions += Package.MainClass("JettyLauncher")
-    ) ++ seq(Twirl.settings: _*)
-  )
+  ).enablePlugins(SbtTwirl)
 }

project/plugins.sbt

@@ -4,8 +4,6 @@ addSbtPlugin("com.github.mpeltonen" % "sbt-idea" % "1.6.0")
 
 addSbtPlugin("org.scalatra.sbt" % "scalatra-sbt" % "0.3.5")
 
-resolvers += "spray repo" at "http://repo.spray.io"
-
-addSbtPlugin("io.spray" % "sbt-twirl" % "0.7.0")
+addSbtPlugin("com.typesafe.sbt" % "sbt-twirl" % "1.0.2")
 
 addSbtPlugin("com.timushev.sbt" % "sbt-updates" % "0.1.4")

sbt.bat

@@ -1,2 +1,2 @@
 set SCRIPT_DIR=%~dp0
-java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.1.jar" %*
+java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.5.jar" %*

sbt.sh

@@ -1 +1,2 @@
-java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.1.jar "$@"
+#!/bin/sh
+java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.5.jar "$@"

src/main/java/JettyLauncher.java

@@ -1,10 +1,8 @@
-import org.eclipse.jetty.io.EndPoint;
-import org.eclipse.jetty.server.Request;
 import org.eclipse.jetty.server.Server;
 import org.eclipse.jetty.server.nio.SelectChannelConnector;
 import org.eclipse.jetty.webapp.WebAppContext;
 
-import java.io.IOException;
+import java.io.File;
 import java.net.URL;
 import java.security.ProtectionDomain;
 
@@ -44,6 +42,14 @@ public class JettyLauncher {
         server.addConnector(connector);
 
         WebAppContext context = new WebAppContext();
+
+        File tmpDir = new File(getGitBucketHome(), "tmp");
+        if(tmpDir.exists()){
+            deleteDirectory(tmpDir);
+        }
+        tmpDir.mkdirs();
+        context.setTempDirectory(tmpDir);
+
         ProtectionDomain domain = JettyLauncher.class.getProtectionDomain();
         URL location = domain.getCodeSource().getLocation();
 
@@ -59,4 +65,27 @@ public class JettyLauncher {
         server.start();
         server.join();
     }
+
+    private static File getGitBucketHome(){
+        String home = System.getProperty("gitbucket.home");
+        if(home != null && home.length() > 0){
+            return new File(home);
+        }
+        home = System.getenv("GITBUCKET_HOME");
+        if(home != null && home.length() > 0){
+            return new File(home);
+        }
+        return new File(System.getProperty("user.home"), ".gitbucket");
+    }
+
+    private static void deleteDirectory(File dir){
+        for(File file: dir.listFiles()){
+            if(file.isFile()){
+                file.delete();
+            } else if(file.isDirectory()){
+                deleteDirectory(file);
+            }
+        }
+        dir.delete();
+    }
 }

src/main/resources/update/2_3.sql

@@ -0,0 +1,6 @@
+CREATE TABLE PLUGIN (
+  PLUGIN_ID VARCHAR(100) NOT NULL,
+  VERSION   VARCHAR(100) NOT NULL
+);
+
+ALTER TABLE PLUGIN ADD CONSTRAINT IDX_PLUGIN_PK PRIMARY KEY (PLUGIN_ID);

src/main/resources/update/2_7.sql

@@ -0,0 +1,18 @@
+CREATE TABLE COMMIT_COMMENT (
+    USER_NAME VARCHAR(100) NOT NULL,
+    REPOSITORY_NAME VARCHAR(100) NOT NULL,
+    COMMIT_ID VARCHAR(100) NOT NULL,
+    COMMENT_ID INT AUTO_INCREMENT,
+    COMMENTED_USER_NAME VARCHAR(100) NOT NULL,
+    CONTENT TEXT NOT NULL,
+    FILE_NAME NVARCHAR(100),
+    OLD_LINE_NUMBER INT,
+    NEW_LINE_NUMBER INT,
+    REGISTERED_DATE TIMESTAMP NOT NULL,
+    UPDATED_DATE TIMESTAMP NOT NULL,
+    PULL_REQUEST BOOLEAN NOT NULL
+);
+
+ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_PK PRIMARY KEY (COMMENT_ID);
+ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
+ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_1 UNIQUE (USER_NAME, REPOSITORY_NAME, COMMIT_ID, COMMENT_ID);

src/main/resources/update/2_8.sql

@@ -0,0 +1 @@
+ALTER TABLE COMMIT_COMMENT ALTER COLUMN FILE_NAME NVARCHAR(260);

src/main/scala/ScalatraBootstrap.scala

@@ -1,4 +1,4 @@
-import _root_.servlet.{PluginActionInvokeFilter, BasicAuthenticationFilter, TransactionFilter}
+import _root_.servlet.{BasicAuthenticationFilter, TransactionFilter}
 import app._
 //import jp.sf.amateras.scalatra.forms.ValidationJavaScriptProvider
 import org.scalatra._
@@ -10,12 +10,11 @@ class ScalatraBootstrap extends LifeCycle {
     // Register TransactionFilter and BasicAuthenticationFilter at first
     context.addFilter("transactionFilter", new TransactionFilter)
     context.getFilterRegistration("transactionFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/*")
-    context.addFilter("pluginActionInvokeFilter", new PluginActionInvokeFilter)
-    context.getFilterRegistration("pluginActionInvokeFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/*")
     context.addFilter("basicAuthenticationFilter", new BasicAuthenticationFilter)
     context.getFilterRegistration("basicAuthenticationFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/git/*")
 
     // Register controllers
+    context.mount(new AnonymousAccessController, "/*")
     context.mount(new IndexController, "/")
     context.mount(new SearchController, "/")
     context.mount(new FileUploadController, "/upload")

src/main/scala/app/AccountController.scala

@@ -88,6 +88,12 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     "name"  -> trim(label("Repository name",  text(required)))
   )(ForkRepositoryForm.apply)
 
+  case class AccountForm(accountName: String)
+
+  val accountForm = mapping(
+    "account" -> trim(label("Group/User name", text(required, validAccountName)))
+  )(AccountForm.apply)
+
   /**
    * Displays user information.
    */
@@ -129,8 +135,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   get("/:userName/_avatar"){
     val userName = params("userName")
     getAccountByUserName(userName).flatMap(_.image).map { image =>
-      contentType = FileUtil.getMimeType(image)
-      new java.io.File(getUserUploadDir(userName), image)
+      RawData(FileUtil.getMimeType(image), new java.io.File(getUserUploadDir(userName), image))
     } getOrElse {
       contentType = "image/png"
       Thread.currentThread.getContextClassLoader.getResourceAsStream("noimage.png")
@@ -285,7 +290,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
    * Show the new repository form.
    */
   get("/new")(usersOnly {
-    account.html.newrepo(getGroupsByUserName(context.loginAccount.get.userName))
+    account.html.newrepo(getGroupsByUserName(context.loginAccount.get.userName), context.settings.isCreateRepoOptionPublic)
   })
 
   /**
@@ -335,7 +340,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
             builder.finish()
 
             JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
-              loginAccount.fullName, loginAccount.mailAddress, "Initial commit")
+              Constants.HEAD, loginAccount.fullName, loginAccount.mailAddress, "Initial commit")
           }
         }
 
@@ -354,11 +359,31 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   get("/:owner/:repository/fork")(readableUsersOnly { repository =>
     val loginAccount   = context.loginAccount.get
     val loginUserName  = loginAccount.userName
+    val groups         = getGroupsByUserName(loginUserName)
+    groups match {
+      case _: List[String] =>
+        val managerPermissions = groups.map { group =>
+          val members = getGroupMembers(group)
+          context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager })
+        }
+        _root_.helper.html.forkrepository(
+          repository,
+          (groups zip managerPermissions).toMap
+        )
+      case _ => redirect(s"/${loginUserName}")
+    }
+  })
 
-    LockUtil.lock(s"${loginUserName}/${repository.name}"){
-      if(repository.owner == loginUserName || getRepository(loginAccount.userName, repository.name, baseUrl).isDefined){
+  post("/:owner/:repository/fork", accountForm)(readableUsersOnly { (form, repository) =>
+    val loginAccount  = context.loginAccount.get
+    val loginUserName = loginAccount.userName
+    val accountName   = form.accountName
+
+    LockUtil.lock(s"${accountName}/${repository.name}"){
+      if(getRepository(accountName, repository.name, baseUrl).isDefined ||
+          (accountName != loginUserName && !getGroupsByUserName(loginUserName).contains(accountName))){
         // redirect to the repository if repository already exists
-        redirect(s"/${loginUserName}/${repository.name}")
+        redirect(s"/${accountName}/${repository.name}")
       } else {
         // Insert to the database at first
         val originUserName = repository.repository.originUserName.getOrElse(repository.owner)
@@ -366,7 +391,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 
         createRepository(
           repositoryName       = repository.name,
-          userName             = loginUserName,
+          userName             = accountName,
           description          = repository.repository.description,
           isPrivate            = repository.repository.isPrivate,
           originRepositoryName = Some(originRepositoryName),
@@ -376,22 +401,22 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         )
 
         // Insert default labels
-        insertDefaultLabels(loginUserName, repository.name)
+        insertDefaultLabels(accountName, repository.name)
 
         // clone repository actually
         JGitUtil.cloneRepository(
           getRepositoryDir(repository.owner, repository.name),
-          getRepositoryDir(loginUserName, repository.name))
+          getRepositoryDir(accountName, repository.name))
 
         // Create Wiki repository
         JGitUtil.cloneRepository(
           getWikiRepositoryDir(repository.owner, repository.name),
-          getWikiRepositoryDir(loginUserName, repository.name))
+          getWikiRepositoryDir(accountName, repository.name))
 
         // Record activity
-        recordForkActivity(repository.owner, repository.name, loginUserName)
+        recordForkActivity(repository.owner, repository.name, loginUserName, accountName)
         // redirect to the repository
-        redirect(s"/${loginUserName}/${repository.name}")
+        redirect(s"/${accountName}/${repository.name}")
       }
     }
   })
@@ -431,4 +456,13 @@ trait AccountControllerBase extends AccountManagementControllerBase {
      case None => Some("Key is invalid.")
     }
   }
+
+  private def validAccountName: Constraint = new Constraint(){
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
+      getAccountByUserName(value) match {
+        case Some(_) => None
+        case None => Some("Invalid Group/User Account.")
+      }
+    }
+  }
 }

src/main/scala/app/AnonymousAccessController.scala

@@ -0,0 +1,14 @@
+package app
+
+class AnonymousAccessController extends AnonymousAccessControllerBase
+
+trait AnonymousAccessControllerBase extends ControllerBase {
+  get(!context.settings.allowAnonymousAccess, context.loginAccount.isEmpty) {
+    if(!context.currentPath.startsWith("/assets") && !context.currentPath.startsWith("/signin") &&
+      !context.currentPath.startsWith("/register")) {
+      Unauthorized()
+    } else {
+      pass()
+    }
+  }
+}

src/main/scala/app/ControllerBase.scala

@@ -134,6 +134,18 @@ abstract class ControllerBase extends ScalatraFilter
     if (path.startsWith("http")) path
     else baseUrl + super.url(path, params, false, false, false)
 
+  /**
+   * Use this method to response the raw data against XSS.
+   */
+  protected def RawData[T](contentType: String, rawData: T): T = {
+    if(contentType.split(";").head.trim.toLowerCase.startsWith("text/html")){
+      this.contentType = "text/plain"
+    } else {
+      this.contentType = contentType
+    }
+    response.addHeader("X-Content-Type-Options", "nosniff")
+    rawData
+  }
 }
 
 /**

src/main/scala/app/DashboardController.scala

@@ -1,18 +1,33 @@
 package app
 
 import service._
-import util.{UsersAuthenticator, Keys}
+import util.{StringUtil, UsersAuthenticator, Keys}
 import util.Implicits._
+import service.IssuesService.IssueSearchCondition
 
 class DashboardController extends DashboardControllerBase
   with IssuesService with PullRequestService with RepositoryService with AccountService
   with UsersAuthenticator
 
 trait DashboardControllerBase extends ControllerBase {
-  self: IssuesService with PullRequestService with RepositoryService with UsersAuthenticator =>
+  self: IssuesService with PullRequestService with RepositoryService with AccountService
+    with UsersAuthenticator =>
 
-  get("/dashboard/issues/repos")(usersOnly {
-    searchIssues("all")
+  get("/dashboard/issues")(usersOnly {
+    val q = request.getParameter("q")
+    val account = context.loginAccount.get
+    Option(q).map { q =>
+      val condition = IssueSearchCondition(q, Map[String, Int]())
+      q match {
+        case q if(q.contains("is:pr")) => redirect(s"/dashboard/pulls?q=${StringUtil.urlEncode(q)}")
+        case q if(q.contains(s"author:${account.userName}")) => redirect(s"/dashboard/issues/created_by${condition.toURL}")
+        case q if(q.contains(s"assignee:${account.userName}")) => redirect(s"/dashboard/issues/assigned${condition.toURL}")
+        case q if(q.contains(s"mentions:${account.userName}")) => redirect(s"/dashboard/issues/mentioned${condition.toURL}")
+        case _ => searchIssues("created_by")
+      }
+    } getOrElse {
+      searchIssues("created_by")
+    }
   })
 
   get("/dashboard/issues/assigned")(usersOnly {
@@ -23,87 +38,99 @@ trait DashboardControllerBase extends ControllerBase {
     searchIssues("created_by")
   })
 
+  get("/dashboard/issues/mentioned")(usersOnly {
+    searchIssues("mentioned")
+  })
+
   get("/dashboard/pulls")(usersOnly {
-    searchPullRequests("created_by", None)
+    val q = request.getParameter("q")
+    val account = context.loginAccount.get
+    Option(q).map { q =>
+      val condition = IssueSearchCondition(q, Map[String, Int]())
+      q match {
+        case q if(q.contains("is:issue")) => redirect(s"/dashboard/issues?q=${StringUtil.urlEncode(q)}")
+        case q if(q.contains(s"author:${account.userName}")) => redirect(s"/dashboard/pulls/created_by${condition.toURL}")
+        case q if(q.contains(s"assignee:${account.userName}")) => redirect(s"/dashboard/pulls/assigned${condition.toURL}")
+        case q if(q.contains(s"mentions:${account.userName}")) => redirect(s"/dashboard/pulls/mentioned${condition.toURL}")
+        case _ => searchPullRequests("created_by")
+      }
+    } getOrElse {
+      searchPullRequests("created_by")
+    }
   })
 
-  get("/dashboard/pulls/owned")(usersOnly {
-    searchPullRequests("created_by", None)
+  get("/dashboard/pulls/created_by")(usersOnly {
+    searchPullRequests("created_by")
   })
 
-  get("/dashboard/pulls/public")(usersOnly {
-    searchPullRequests("not_created_by", None)
+  get("/dashboard/pulls/assigned")(usersOnly {
+    searchPullRequests("assigned")
   })
 
-  get("/dashboard/pulls/for/:owner/:repository")(usersOnly {
-    searchPullRequests("all", Some(params("owner") + "/" + params("repository")))
+  get("/dashboard/pulls/mentioned")(usersOnly {
+    searchPullRequests("mentioned")
   })
 
+  private def getOrCreateCondition(key: String, filter: String, userName: String) = {
+    val condition = session.putAndGet(key, if(request.hasQueryString){
+      val q = request.getParameter("q")
+      if(q == null){
+        IssueSearchCondition(request)
+      } else {
+        IssueSearchCondition(q, Map[String, Int]())
+      }
+    } else session.getAs[IssueSearchCondition](key).getOrElse(IssueSearchCondition()))
+
+    filter match {
+      case "assigned"  => condition.copy(assigned = Some(userName), author = None          , mentioned = None)
+      case "mentioned" => condition.copy(assigned = None          , author = None          , mentioned = Some(userName))
+      case _           => condition.copy(assigned = None          , author = Some(userName), mentioned = None)
+    }
+  }
+
   private def searchIssues(filter: String) = {
     import IssuesService._
 
-    // condition
-    val condition = session.putAndGet(Keys.Session.DashboardIssues,
-      if(request.hasQueryString) IssueSearchCondition(request)
-      else session.getAs[IssueSearchCondition](Keys.Session.DashboardIssues).getOrElse(IssueSearchCondition())
-    )
-
     val userName  = context.loginAccount.get.userName
+    val condition = getOrCreateCondition(Keys.Session.DashboardIssues, filter, userName)
     val userRepos = getUserRepositories(userName, context.baseUrl, true).map(repo => repo.owner -> repo.name)
-    val filterUser = Map(filter -> userName)
     val page      = IssueSearchCondition.page(request)
 
     dashboard.html.issues(
-        issues.html.listparts(
-            searchIssue(condition, filterUser, false, (page - 1) * IssueLimit, IssueLimit, userRepos: _*),
+      searchIssue(condition, false, (page - 1) * IssueLimit, IssueLimit, userRepos: _*),
       page,
-            countIssue(condition.copy(state = "open"  ), filterUser, false, userRepos: _*),
-            countIssue(condition.copy(state = "closed"), filterUser, false, userRepos: _*),
-            condition),
-        countIssue(condition, Map.empty, false, userRepos: _*),
-        countIssue(condition, Map("assigned"   -> userName), false, userRepos: _*),
-        countIssue(condition, Map("created_by" -> userName), false, userRepos: _*),
-        countIssueGroupByRepository(condition, filterUser, false, userRepos: _*),
-        condition,
-        filter)    
-    
+      countIssue(condition.copy(state = "open"  ), false, userRepos: _*),
+      countIssue(condition.copy(state = "closed"), false, userRepos: _*),
+      filter match {
+        case "assigned"  => condition.copy(assigned  = Some(userName))
+        case "mentioned" => condition.copy(mentioned = Some(userName))
+        case _           => condition.copy(author    = Some(userName))
+      },
+      filter,
+      getGroupNames(userName))
   }
 
-  private def searchPullRequests(filter: String, repository: Option[String]) = {
+  private def searchPullRequests(filter: String) = {
     import IssuesService._
     import PullRequestService._
 
-    // condition
-    val condition = session.putAndGet(Keys.Session.DashboardPulls, {
-      if(request.hasQueryString) IssueSearchCondition(request)
-      else session.getAs[IssueSearchCondition](Keys.Session.DashboardPulls).getOrElse(IssueSearchCondition())
-    }.copy(repo = repository))
-
     val userName  = context.loginAccount.get.userName
-    val allRepos   = getAllRepositories()
-    val userRepos  = getUserRepositories(userName, context.baseUrl, true).map(repo => repo.owner -> repo.name)
-    val filterUser = Map(filter -> userName)
+    val condition = getOrCreateCondition(Keys.Session.DashboardPulls, filter, userName)
+    val allRepos  = getAllRepositories(userName)
     val page      = IssueSearchCondition.page(request)
 
-    val counts = countIssueGroupByRepository(
-      IssueSearchCondition().copy(state = condition.state), Map.empty, true, userRepos: _*)
-
     dashboard.html.pulls(
-      pulls.html.listparts(
-        searchIssue(condition, filterUser, true, (page - 1) * PullRequestLimit, PullRequestLimit, allRepos: _*),
+      searchIssue(condition, true, (page - 1) * PullRequestLimit, PullRequestLimit, allRepos: _*),
       page,
-        countIssue(condition.copy(state = "open"  ), filterUser, true, allRepos: _*),
-        countIssue(condition.copy(state = "closed"), filterUser, true, allRepos: _*),
-        condition,
-        None,
-        false),
-      getPullRequestCountGroupByUser(condition.state == "closed", None, None),
-      userRepos.map { case (userName, repoName) =>
-        (userName, repoName, counts.find { x => x._1 == userName && x._2 == repoName }.map(_._3).getOrElse(0))
-      }.sortBy(_._3).reverse,
-      condition,
-      filter)
-
+      countIssue(condition.copy(state = "open"  ), true, allRepos: _*),
+      countIssue(condition.copy(state = "closed"), true, allRepos: _*),
+      filter match {
+        case "assigned"  => condition.copy(assigned  = Some(userName))
+        case "mentioned" => condition.copy(mentioned = Some(userName))
+        case _           => condition.copy(author    = Some(userName))
+      },
+      filter,
+      getGroupNames(userName))
   }
 
 

src/main/scala/app/IssuesController.scala

@@ -20,7 +20,6 @@ trait IssuesControllerBase extends ControllerBase {
 
   case class IssueCreateForm(title: String, content: Option[String],
     assignedUserName: Option[String], milestoneId: Option[Int], labelNames: Option[String])
-  case class IssueEditForm(title: String, content: Option[String])
   case class CommentForm(issueId: Int, content: String)
   case class IssueStateForm(issueId: Int, content: Option[String])
 
@@ -32,10 +31,12 @@ trait IssuesControllerBase extends ControllerBase {
       "labelNames"       -> trim(optional(text()))
     )(IssueCreateForm.apply)
 
+  val issueTitleEditForm = mapping(
+    "title" -> trim(label("Title", text(required)))
+    )(x => x)
   val issueEditForm = mapping(
-      "title"   -> trim(label("Title", text(required))),
     "content" -> trim(optional(text()))
-    )(IssueEditForm.apply)
+    )(x => x)
 
   val commentForm = mapping(
       "issueId" -> label("Issue Id", number()),
@@ -47,16 +48,13 @@ trait IssuesControllerBase extends ControllerBase {
       "content" -> trim(optional(text()))
     )(IssueStateForm.apply)
 
-  get("/:owner/:repository/issues")(referrersOnly {
-    searchIssues("all", _)
-  })
-
-  get("/:owner/:repository/issues/assigned/:userName")(referrersOnly {
-    searchIssues("assigned", _)
-  })
-
-  get("/:owner/:repository/issues/created_by/:userName")(referrersOnly {
-    searchIssues("created_by", _)
+  get("/:owner/:repository/issues")(referrersOnly { repository =>
+    val q = request.getParameter("q")
+    if(Option(q).exists(_.contains("is:pr"))){
+      redirect(s"/${repository.owner}/${repository.name}/pulls?q=" + StringUtil.urlEncode(q))
+    } else {
+      searchIssues(repository)
+    }
   })
 
   get("/:owner/:repository/issues/:id")(referrersOnly { repository =>
@@ -125,14 +123,29 @@ trait IssuesControllerBase extends ControllerBase {
     }
   })
 
-  ajaxPost("/:owner/:repository/issues/edit/:id", issueEditForm)(readableUsersOnly { (form, repository) =>
+  ajaxPost("/:owner/:repository/issues/edit_title/:id", issueTitleEditForm)(readableUsersOnly { (title, repository) =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       getIssue(owner, name, params("id")).map { issue =>
         if(isEditable(owner, name, issue.openedUserName)){
           // update issue
-          updateIssue(owner, name, issue.issueId, form.title, form.content)
+          updateIssue(owner, name, issue.issueId, title, issue.content)
           // extract references and create refer comment
-          createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""))
+          createReferComment(owner, name, issue.copy(title = title), title)
+
+          redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
+        } else Unauthorized
+      } getOrElse NotFound
+    }
+  })
+
+  ajaxPost("/:owner/:repository/issues/edit/:id", issueEditForm)(readableUsersOnly { (content, repository) =>
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      getIssue(owner, name, params("id")).map { issue =>
+        if(isEditable(owner, name, issue.openedUserName)){
+          // update issue
+          updateIssue(owner, name, issue.issueId, issue.title, content)
+          // extract references and create refer comment
+          createReferComment(owner, name, issue, content.getOrElse(""))
 
           redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
         } else Unauthorized
@@ -180,13 +193,13 @@ trait IssuesControllerBase extends ControllerBase {
       if(isEditable(x.userName, x.repositoryName, x.openedUserName)){
         params.get("dataType") collect {
           case t if t == "html" => issues.html.editissue(
-              x.title, x.content, x.issueId, x.userName, x.repositoryName)
+              x.content, x.issueId, x.userName, x.repositoryName)
         } getOrElse {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
               Map("title"   -> x.title,
                   "content" -> view.Markdown.toHtml(x.content getOrElse "No description given.",
-                      repository, false, true)
+                      repository, false, true, true, isEditable(x.userName, x.repositoryName, x.openedUserName))
               ))
         }
       } else Unauthorized
@@ -203,7 +216,7 @@ trait IssuesControllerBase extends ControllerBase {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
               Map("content" -> view.Markdown.toHtml(x.content,
-                  repository, false, true)
+                  repository, false, true, true, isEditable(x.userName, x.repositoryName, x.commentedUserName))
               ))
         }
       } else Unauthorized
@@ -234,15 +247,17 @@ trait IssuesControllerBase extends ControllerBase {
     milestoneId("milestoneId").map { milestoneId =>
       getMilestonesWithIssueCount(repository.owner, repository.name)
           .find(_._1.milestoneId == milestoneId).map { case (_, openCount, closeCount) =>
-        issues.milestones.html.progress(openCount + closeCount, closeCount, false)
+        issues.milestones.html.progress(openCount + closeCount, closeCount)
       } getOrElse NotFound
     } getOrElse Ok()
   })
 
   post("/:owner/:repository/issues/batchedit/state")(collaboratorsOnly { repository =>
     defining(params.get("value")){ action =>
-      executeBatch(repository) {
-        handleComment(_, None, repository)( _ => action)
+      action match {
+        case Some("open")  => executeBatch(repository) { handleComment(_, None, repository)( _ => Some("reopen")) }
+        case Some("close") => executeBatch(repository) { handleComment(_, None, repository)( _ => Some("close"))  }
+        case _ => // TODO BadRequest
       }
     }
   })
@@ -277,8 +292,7 @@ trait IssuesControllerBase extends ControllerBase {
     (Directory.getAttachedDir(repository.owner, repository.name) match {
       case dir if(dir.exists && dir.isDirectory) =>
         dir.listFiles.find(_.getName.startsWith(params("file") + ".")).map { file =>
-          contentType = FileUtil.getMimeType(file.getName)
-          file
+          RawData(FileUtil.getMimeType(file.getName), file)
         }
       case _ => None
     }) getOrElse NotFound
@@ -292,7 +306,10 @@ trait IssuesControllerBase extends ControllerBase {
 
   private def executeBatch(repository: RepositoryService.RepositoryInfo)(execute: Int => Unit) = {
     params("checked").split(',') map(_.toInt) foreach execute
-    redirect(s"/${repository.owner}/${repository.name}/issues")
+    params("from") match {
+      case "issues" => redirect(s"/${repository.owner}/${repository.name}/issues")
+      case "pulls"  => redirect(s"/${repository.owner}/${repository.name}/pulls")
+    }
   }
 
   private def createReferComment(owner: String, repository: String, fromIssue: Issue, message: String) = {
@@ -318,10 +335,10 @@ trait IssuesControllerBase extends ControllerBase {
         val (action, recordActivity) =
           getAction(issue)
             .collect {
-            case "close"  => true  -> (Some("close")  ->
-              Some(if(issue.isPullRequest) recordClosePullRequestActivity _ else recordCloseIssueActivity _))
-            case "reopen" => false -> (Some("reopen") ->
-              Some(recordReopenIssueActivity _))
+              case "close" if(!issue.closed) => true  ->
+                (Some("close")  -> Some(if(issue.isPullRequest) recordClosePullRequestActivity _ else recordCloseIssueActivity _))
+              case "reopen" if(issue.closed) => false ->
+                (Some("reopen") -> Some(recordReopenIssueActivity _))
             }
             .map { case (closed, t) =>
               updateClosed(owner, name, issueId, closed)
@@ -336,7 +353,7 @@ trait IssuesControllerBase extends ControllerBase {
           case (content, action) => createComment(owner, name, userName, issueId, content, action)
         }
 
-        // record activity
+        // record comment activity if comment is entered
         content foreach {
           (if(issue.isPullRequest) recordCommentPullRequestActivity _ else recordCommentIssueActivity _)
           (owner, name, userName, issueId, _)
@@ -369,32 +386,33 @@ trait IssuesControllerBase extends ControllerBase {
     }
   }
 
-  private def searchIssues(filter: String, repository: RepositoryService.RepositoryInfo) = {
+  private def searchIssues(repository: RepositoryService.RepositoryInfo) = {
     defining(repository.owner, repository.name){ case (owner, repoName) =>
-      val filterUser = Map(filter -> params.getOrElse("userName", ""))
       val page       = IssueSearchCondition.page(request)
       val sessionKey = Keys.Session.Issues(owner, repoName)
 
       // retrieve search condition
       val condition = session.putAndGet(sessionKey,
-        if(request.hasQueryString) IssueSearchCondition(request)
-        else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
+        if(request.hasQueryString){
+          val q = request.getParameter("q")
+          if(q == null){
+            IssueSearchCondition(request)
+          } else {
+            IssueSearchCondition(q, getMilestones(owner, repoName).map(x => (x.title, x.milestoneId)).toMap)
+          }
+        } else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
       )
 
       issues.html.list(
-          searchIssue(condition, filterUser, false, (page - 1) * IssueLimit, IssueLimit, owner -> repoName),
+          "issues",
+          searchIssue(condition, false, (page - 1) * IssueLimit, IssueLimit, owner -> repoName),
           page,
           (getCollaborators(owner, repoName) :+ owner).sorted,
           getMilestones(owner, repoName),
           getLabels(owner, repoName),
-          countIssue(condition.copy(state = "open"), filterUser, false, owner -> repoName),
-          countIssue(condition.copy(state = "closed"), filterUser, false, owner -> repoName),
-          countIssue(condition, Map.empty, false, owner -> repoName),
-          context.loginAccount.map(x => countIssue(condition, Map("assigned" -> x.userName), false, owner -> repoName)),
-          context.loginAccount.map(x => countIssue(condition, Map("created_by" -> x.userName), false, owner -> repoName)),
-          countIssueGroupByLabels(owner, repoName, condition, filterUser),
+          countIssue(condition.copy(state = "open"  ), false, owner -> repoName),
+          countIssue(condition.copy(state = "closed"), false, owner -> repoName),
           condition,
-          filter,
           repository,
           hasWritePermission(owner, repoName, context.loginAccount))
     }

src/main/scala/app/LabelsController.scala

@@ -2,51 +2,67 @@ package app
 
 import jp.sf.amateras.scalatra.forms._
 import service._
-import util.CollaboratorsAuthenticator
+import util.{ReferrerAuthenticator, CollaboratorsAuthenticator}
 import util.Implicits._
 import org.scalatra.i18n.Messages
+import org.scalatra.Ok
 
 class LabelsController extends LabelsControllerBase
-  with LabelsService with RepositoryService with AccountService with CollaboratorsAuthenticator
+  with LabelsService with IssuesService with RepositoryService with AccountService
+with ReferrerAuthenticator with CollaboratorsAuthenticator
 
 trait LabelsControllerBase extends ControllerBase {
-  self: LabelsService with RepositoryService with CollaboratorsAuthenticator =>
+  self: LabelsService with IssuesService with RepositoryService
+    with ReferrerAuthenticator with CollaboratorsAuthenticator =>
 
   case class LabelForm(labelName: String, color: String)
 
-  val newForm = mapping(
-    "newLabelName" -> trim(label("Label name", text(required, labelName, maxlength(100)))),
-    "newColor"     -> trim(label("Color",      text(required, color)))
+  val labelForm = mapping(
+    "labelName"  -> trim(label("Label name", text(required, labelName, maxlength(100)))),
+    "labelColor" -> trim(label("Color",      text(required, color)))
   )(LabelForm.apply)
 
-  val editForm = mapping(
-    "editLabelName" -> trim(label("Label name", text(required, labelName, maxlength(100)))),
-    "editColor"     -> trim(label("Color",      text(required, color)))
-  )(LabelForm.apply)
-
-  post("/:owner/:repository/issues/label/new", newForm)(collaboratorsOnly { (form, repository) =>
-    createLabel(repository.owner, repository.name, form.labelName, form.color.substring(1))
-    redirect(s"/${repository.owner}/${repository.name}/issues")
+  get("/:owner/:repository/issues/labels")(referrersOnly { repository =>
+    issues.labels.html.list(
+      getLabels(repository.owner, repository.name),
+      countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
+      repository,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
-  ajaxGet("/:owner/:repository/issues/label/edit")(collaboratorsOnly { repository =>
-    issues.labels.html.editlist(getLabels(repository.owner, repository.name), repository)
+  ajaxGet("/:owner/:repository/issues/labels/new")(collaboratorsOnly { repository =>
+    issues.labels.html.edit(None, repository)
   })
 
-  ajaxGet("/:owner/:repository/issues/label/:labelId/edit")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/labels/new", labelForm)(collaboratorsOnly { (form, repository) =>
+    val labelId = createLabel(repository.owner, repository.name, form.labelName, form.color.substring(1))
+    issues.labels.html.label(
+      getLabel(repository.owner, repository.name, labelId).get,
+      // TODO futility
+      countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
+      repository,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+  })
+
+  ajaxGet("/:owner/:repository/issues/labels/:labelId/edit")(collaboratorsOnly { repository =>
     getLabel(repository.owner, repository.name, params("labelId").toInt).map { label =>
       issues.labels.html.edit(Some(label), repository)
     } getOrElse NotFound()
   })
 
-  ajaxPost("/:owner/:repository/issues/label/:labelId/edit", editForm)(collaboratorsOnly { (form, repository) =>
+  ajaxPost("/:owner/:repository/issues/labels/:labelId/edit", labelForm)(collaboratorsOnly { (form, repository) =>
     updateLabel(repository.owner, repository.name, params("labelId").toInt, form.labelName, form.color.substring(1))
-    issues.labels.html.editlist(getLabels(repository.owner, repository.name), repository)
+    issues.labels.html.label(
+      getLabel(repository.owner, repository.name, params("labelId").toInt).get,
+      // TODO futility
+      countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
+      repository,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
-  ajaxGet("/:owner/:repository/issues/label/:labelId/delete")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/labels/:labelId/delete")(collaboratorsOnly { repository =>
     deleteLabel(repository.owner, repository.name, params("labelId").toInt)
-    issues.labels.html.editlist(getLabels(repository.owner, repository.name), repository)
+    Ok()
   })
 
   /**

src/main/scala/app/PullRequestsController.scala

@@ -1,6 +1,6 @@
 package app
 
-import util.{LockUtil, CollaboratorsAuthenticator, JGitUtil, ReferrerAuthenticator, Notifier, Keys}
+import util._
 import util.Directory._
 import util.Implicits._
 import util.ControlUtil._
@@ -12,20 +12,21 @@ import scala.collection.JavaConverters._
 import org.eclipse.jgit.lib.{ObjectId, CommitBuilder, PersonIdent}
 import service.IssuesService._
 import service.PullRequestService._
-import util.JGitUtil.DiffInfo
-import util.JGitUtil.CommitInfo
 import org.slf4j.LoggerFactory
 import org.eclipse.jgit.merge.MergeStrategy
 import org.eclipse.jgit.errors.NoMergeBaseException
 import service.WebHookService.WebHookPayload
+import util.JGitUtil.DiffInfo
+import util.JGitUtil.CommitInfo
+
 
 class PullRequestsController extends PullRequestsControllerBase
   with RepositoryService with AccountService with IssuesService with PullRequestService with MilestonesService with LabelsService
-  with ActivityService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator
+  with CommitsService with ActivityService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator
 
 trait PullRequestsControllerBase extends ControllerBase {
   self: RepositoryService with AccountService with IssuesService with MilestonesService with LabelsService
-    with ActivityService with PullRequestService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator =>
+    with CommitsService with ActivityService with PullRequestService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator =>
 
   private val logger = LoggerFactory.getLogger(classOf[PullRequestsControllerBase])
 
@@ -59,11 +60,12 @@ trait PullRequestsControllerBase extends ControllerBase {
   case class MergeForm(message: String)
 
   get("/:owner/:repository/pulls")(referrersOnly { repository =>
+    val q = request.getParameter("q")
+    if(Option(q).exists(_.contains("is:issue"))){
+      redirect(s"/${repository.owner}/${repository.name}/issues?q=" + StringUtil.urlEncode(q))
+    } else {
       searchPullRequests(None, repository)
-  })
-
-  get("/:owner/:repository/pulls/:userName")(referrersOnly { repository =>
-    searchPullRequests(Some(params("userName")), repository)
+    }
   })
 
   get("/:owner/:repository/pull/:id")(referrersOnly { repository =>
@@ -77,7 +79,8 @@ trait PullRequestsControllerBase extends ControllerBase {
 
           pulls.html.pullreq(
             issue, pullreq,
-            getComments(owner, name, issueId),
+            (commits.flatten.map(commit => getCommitComments(owner, name, commit.id, true)).flatten.toList ::: getComments(owner, name, issueId))
+              .sortWith((a, b) => a.registeredDate before b.registeredDate),
             getIssueLabels(owner, name, issueId),
             (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
             getMilestonesWithIssueCount(owner, name),
@@ -277,6 +280,7 @@ trait PullRequestsControllerBase extends ControllerBase {
             case (Some(userName), Some(repositoryName)) => (userName, repositoryName) :: getForkedRepositories(userName, repositoryName)
             case _ => (forkedRepository.owner, forkedRepository.name) :: getForkedRepositories(forkedRepository.owner, forkedRepository.name)
           },
+          commits.flatten.map(commit => getCommitComments(forkedRepository.owner, forkedRepository.name, commit.id, false)).flatten.toList,
           originBranch,
           forkedBranch,
           oldId.getName,
@@ -453,7 +457,6 @@ trait PullRequestsControllerBase extends ControllerBase {
 
   private def searchPullRequests(userName: Option[String], repository: RepositoryService.RepositoryInfo) =
     defining(repository.owner, repository.name){ case (owner, repoName) =>
-      val filterUser = userName.map { x => Map("created_by" -> x) } getOrElse Map("all" -> "")
       val page       = IssueSearchCondition.page(request)
       val sessionKey = Keys.Session.Pulls(owner, repoName)
 
@@ -463,14 +466,15 @@ trait PullRequestsControllerBase extends ControllerBase {
         else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
       )
 
-      pulls.html.list(
-        searchIssue(condition, filterUser, true, (page - 1) * PullRequestLimit, PullRequestLimit, owner -> repoName),
-        getPullRequestCountGroupByUser(condition.state == "closed", Some(owner), Some(repoName)),
-        userName,
+      issues.html.list(
+        "pulls",
+        searchIssue(condition, true, (page - 1) * PullRequestLimit, PullRequestLimit, owner -> repoName),
         page,
-        countIssue(condition.copy(state = "open"  ), filterUser, true, owner -> repoName),
-        countIssue(condition.copy(state = "closed"), filterUser, true, owner -> repoName),
-        countIssue(condition, Map.empty, true, owner -> repoName),
+        (getCollaborators(owner, repoName) :+ owner).sorted,
+        getMilestones(owner, repoName),
+        getLabels(owner, repoName),
+        countIssue(condition.copy(state = "open"  ), true, owner -> repoName),
+        countIssue(condition.copy(state = "closed"), true, owner -> repoName),
         condition,
         repository,
         hasWritePermission(owner, repoName, context.loginAccount))

src/main/scala/app/RepositorySettingsController.scala

@@ -2,10 +2,8 @@ package app
 
 import service._
 import util.Directory._
-import util.ControlUtil._
 import util.Implicits._
 import util.{LockUtil, UsersAuthenticator, OwnerAuthenticator}
-import util.JGitUtil.CommitInfo
 import jp.sf.amateras.scalatra.forms._
 import org.apache.commons.io.FileUtils
 import org.scalatra.i18n.Messages
@@ -13,6 +11,7 @@ import service.WebHookService.WebHookPayload
 import util.JGitUtil.CommitInfo
 import util.ControlUtil._
 import org.eclipse.jgit.api.Git
+import org.eclipse.jgit.lib.Constants
 
 class RepositorySettingsController extends RepositorySettingsControllerBase
   with RepositoryService with AccountService with WebHookService
@@ -71,11 +70,12 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Save the repository options.
    */
   post("/:owner/:repository/settings/options", optionsForm)(ownerOnly { (form, repository) =>
+    val defaultBranch = if(repository.branchList.isEmpty) "master" else form.defaultBranch
     saveRepositoryOptions(
       repository.owner,
       repository.name,
       form.description,
-      if(repository.branchList.isEmpty) "master" else form.defaultBranch,
+      defaultBranch,
       repository.repository.parentUserName.map { _ =>
         repository.repository.isPrivate
       } getOrElse form.isPrivate
@@ -93,6 +93,10 @@ trait RepositorySettingsControllerBase extends ControllerBase {
         FileUtils.moveDirectory(dir, getWikiRepositoryDir(repository.owner, form.repositoryName))
       }
     }
+    // Change repository HEAD
+    using(Git.open(getRepositoryDir(repository.owner, form.repositoryName))) { git =>
+      git.getRepository.updateRef(Constants.HEAD, true).link(Constants.R_HEADS + defaultBranch)
+    }
     flash += "info" -> "Repository settings has been updated."
     redirect(s"/${repository.owner}/${form.repositoryName}/settings/options")
   })
@@ -131,7 +135,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Display the web hook page.
    */
   get("/:owner/:repository/settings/hooks")(ownerOnly { repository =>
-    settings.html.hooks(getWebHookURLs(repository.owner, repository.name), repository, flash.get("info"))
+    settings.html.hooks(getWebHookURLs(repository.owner, repository.name), flash.get("url"), repository, flash.get("info"))
   })
 
   /**
@@ -153,7 +157,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
   /**
    * Send the test request to registered web hook URLs.
    */
-  get("/:owner/:repository/settings/hooks/test")(ownerOnly { repository =>
+  post("/:owner/:repository/settings/hooks/test", webHookForm)(ownerOnly { (form, repository) =>
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       import scala.collection.JavaConverters._
       val commits = git.log
@@ -161,15 +165,13 @@ trait RepositorySettingsControllerBase extends ControllerBase {
         .setMaxCount(3)
         .call.iterator.asScala.map(new CommitInfo(_))
 
-      getWebHookURLs(repository.owner, repository.name) match {
-        case webHookURLs if(webHookURLs.nonEmpty) =>
-          for(ownerAccount <- getAccountByUserName(repository.owner)){
-            callWebHook(repository.owner, repository.name, webHookURLs,
-              WebHookPayload(git, ownerAccount, "refs/heads/" + repository.repository.defaultBranch, repository, commits.toList, ownerAccount))
+      getAccountByUserName(repository.owner).foreach { ownerAccount =>
+        callWebHook(repository.owner, repository.name,
+          List(model.WebHook(repository.owner, repository.name, form.url)),
+          WebHookPayload(git, ownerAccount, "refs/heads/" + repository.repository.defaultBranch, repository, commits.toList, ownerAccount)
+        )
       }
-        case _ =>
-      }
-
+      flash += "url"  -> form.url
       flash += "info" -> "Test payload deployed!"
     }
     redirect(s"/${repository.owner}/${repository.name}/settings/hooks")

src/main/scala/app/RepositoryViewerController.scala

@@ -20,16 +20,16 @@ import org.eclipse.jgit.revwalk.RevCommit
 import service.WebHookService.WebHookPayload
 
 class RepositoryViewerController extends RepositoryViewerControllerBase
-  with RepositoryService with AccountService with ActivityService with IssuesService with WebHookService
-  with ReferrerAuthenticator with CollaboratorsAuthenticator
+  with RepositoryService with AccountService with ActivityService with IssuesService with WebHookService with CommitsService
+  with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService
 
 
 /**
  * The repository viewer.
  */
 trait RepositoryViewerControllerBase extends ControllerBase {
-  self: RepositoryService with AccountService with ActivityService with IssuesService with WebHookService
-    with ReferrerAuthenticator with CollaboratorsAuthenticator =>
+  self: RepositoryService with AccountService with ActivityService with IssuesService with WebHookService with CommitsService
+    with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService =>
 
   ArchiveCommand.registerFormat("zip", new ZipFormat)
   ArchiveCommand.registerFormat("tar.gz", new TgzFormat)
@@ -52,6 +52,14 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     fileName: String
   )
 
+  case class CommentForm(
+    fileName: Option[String],
+    oldLineNumber: Option[Int],
+    newLineNumber: Option[Int],
+    content: String,
+    issueId: Option[Int]
+  )
+
   val editorForm = mapping(
     "branch"        -> trim(label("Branch", text(required))),
     "path"          -> trim(label("Path", text())),
@@ -70,6 +78,14 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     "fileName" -> trim(label("Filename", text(required)))
   )(DeleteForm.apply)
 
+  val commentForm = mapping(
+    "fileName"      -> trim(label("Filename", optional(text()))),
+    "oldLineNumber" -> trim(label("Old line number", optional(number()))),
+    "newLineNumber" -> trim(label("New line number", optional(number()))),
+    "content"       -> trim(label("Content", text(required))),
+    "issueId"       -> trim(label("Issue Id", optional(number())))
+  )(CommentForm.apply)
+
   /**
    * Returns converted HTML from Markdown for preview.
    */
@@ -77,7 +93,9 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     contentType = "text/html"
     view.helpers.markdown(params("content"), repository,
       params("enableWikiLink").toBoolean,
-      params("enableRefsLink").toBoolean)
+      params("enableRefsLink").toBoolean,
+      params("enableTaskList").toBoolean,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
   /**
@@ -112,7 +130,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
           repo.html.commits(if(path.isEmpty) Nil else path.split("/").toList, branchName, repository,
             logs.splitWith{ (commit1, commit2) =>
               view.helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
-            }, page, hasNext)
+            }, page, hasNext, hasWritePermission(repository.owner, repository.name, context.loginAccount))
         case Left(_) => NotFound
       }
     }
@@ -191,16 +209,16 @@ trait RepositoryViewerControllerBase extends ControllerBase {
 
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(id))
+      val lastModifiedCommit = JGitUtil.getLastModifiedCommit(git, revCommit, path)
       getPathObjectId(git, path, revCommit).map { objectId =>
         if(raw){
           // Download
           defining(JGitUtil.getContentFromId(git, objectId, false).get){ bytes =>
-            contentType = FileUtil.getContentType(path, bytes)
-            bytes
+            RawData(FileUtil.getContentType(path, bytes), bytes)
           }
         } else {
           repo.html.blob(id, repository, path.split("/").toList, JGitUtil.getContentInfo(git, path, objectId),
-            new JGitUtil.CommitInfo(revCommit), hasWritePermission(repository.owner, repository.name, context.loginAccount))
+            new JGitUtil.CommitInfo(lastModifiedCommit), hasWritePermission(repository.owner, repository.name, context.loginAccount))
         }
       } getOrElse NotFound
     }
@@ -218,12 +236,88 @@ trait RepositoryViewerControllerBase extends ControllerBase {
           repo.html.commit(id, new JGitUtil.CommitInfo(revCommit),
             JGitUtil.getBranchesOfCommit(git, revCommit.getName),
             JGitUtil.getTagsOfCommit(git, revCommit.getName),
-            repository, diffs, oldCommitId)
+            getCommitComments(repository.owner, repository.name, id, false),
+            repository, diffs, oldCommitId, hasWritePermission(repository.owner, repository.name, context.loginAccount))
         }
       }
     }
   })
 
+  post("/:owner/:repository/commit/:id/comment/new", commentForm)(readableUsersOnly { (form, repository) =>
+    val id = params("id")
+    createCommitComment(repository.owner, repository.name, id, context.loginAccount.get.userName, form.content,
+      form.fileName, form.oldLineNumber, form.newLineNumber, form.issueId.isDefined)
+    form.issueId match {
+      case Some(issueId) => recordCommentPullRequestActivity(repository.owner, repository.name, context.loginAccount.get.userName, issueId, form.content)
+      case None => recordCommentCommitActivity(repository.owner, repository.name, context.loginAccount.get.userName, id, form.content)
+    }
+    redirect(s"/${repository.owner}/${repository.name}/commit/${id}")
+  })
+
+  ajaxGet("/:owner/:repository/commit/:id/comment/_form")(readableUsersOnly { repository =>
+    val id            = params("id")
+    val fileName      = params.get("fileName")
+    val oldLineNumber = params.get("oldLineNumber") map (_.toInt)
+    val newLineNumber = params.get("newLineNumber") map (_.toInt)
+    val issueId   = params.get("issueId") map (_.toInt)
+    repo.html.commentform(
+      commitId = id,
+      fileName, oldLineNumber, newLineNumber, issueId,
+      hasWritePermission = hasWritePermission(repository.owner, repository.name, context.loginAccount),
+      repository = repository
+    )
+  })
+
+  ajaxPost("/:owner/:repository/commit/:id/comment/_data/new", commentForm)(readableUsersOnly { (form, repository) =>
+    val id = params("id")
+    val commentId = createCommitComment(repository.owner, repository.name, id, context.loginAccount.get.userName,
+      form.content, form.fileName, form.oldLineNumber, form.newLineNumber, form.issueId.isDefined)
+    form.issueId match {
+      case Some(issueId) => recordCommentPullRequestActivity(repository.owner, repository.name, context.loginAccount.get.userName, issueId, form.content)
+      case None => recordCommentCommitActivity(repository.owner, repository.name, context.loginAccount.get.userName, id, form.content)
+    }
+    helper.html.commitcomment(getCommitComment(repository.owner, repository.name, commentId.toString).get,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount), repository)
+  })
+
+  ajaxGet("/:owner/:repository/commit_comments/_data/:id")(readableUsersOnly { repository =>
+    getCommitComment(repository.owner, repository.name, params("id")) map { x =>
+      if(isEditable(x.userName, x.repositoryName, x.commentedUserName)){
+        params.get("dataType") collect {
+          case t if t == "html" => repo.html.editcomment(
+            x.content, x.commentId, x.userName, x.repositoryName)
+        } getOrElse {
+          contentType = formats("json")
+          org.json4s.jackson.Serialization.write(
+            Map("content" -> view.Markdown.toHtml(x.content,
+              repository, false, true, true, isEditable(x.userName, x.repositoryName, x.commentedUserName))
+            ))
+        }
+      } else Unauthorized
+    } getOrElse NotFound
+  })
+
+  ajaxPost("/:owner/:repository/commit_comments/edit/:id", commentForm)(readableUsersOnly { (form, repository) =>
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      getCommitComment(owner, name, params("id")).map { comment =>
+        if(isEditable(owner, name, comment.commentedUserName)){
+          updateCommitComment(comment.commentId, form.content)
+          redirect(s"/${owner}/${name}/commit_comments/_data/${comment.commentId}")
+        } else Unauthorized
+      } getOrElse NotFound
+    }
+  })
+
+  ajaxPost("/:owner/:repository/commit_comments/delete/:id")(readableUsersOnly { repository =>
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      getCommitComment(owner, name, params("id")).map { comment =>
+        if(isEditable(owner, name, comment.commentedUserName)){
+          Ok(deleteCommitComment(comment.commentId))
+        } else Unauthorized
+      } getOrElse NotFound
+    }
+  })
+
   /**
    * Displays branches.
    */
@@ -238,6 +332,24 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
   })
 
+  /**
+   * Creates a branch.
+   */
+  post("/:owner/:repository/branches")(collaboratorsOnly { repository =>
+    val newBranchName = params.getOrElse("new", halt(400))
+    val fromBranchName = params.getOrElse("from", halt(400))
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+      JGitUtil.createBranch(git, fromBranchName, newBranchName)
+    } match {
+      case Right(message) =>
+        flash += "info" -> message
+        redirect(s"/${repository.owner}/${repository.name}/tree/${StringUtil.urlEncode(newBranchName).replace("%2F", "/")}")
+      case Left(message) =>
+        flash += "error" -> message
+        redirect(s"/${repository.owner}/${repository.name}/tree/${fromBranchName}")
+    }
+  })
+
   /**
    * Deletes branch.
    */
@@ -311,10 +423,10 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       repo.html.guide(repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
     } else {
       using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
-        //val revisions = Seq(if(revstr.isEmpty) repository.repository.defaultBranch else revstr, repository.branchList.head)
         // get specified commit
         JGitUtil.getDefaultBranch(git, repository, revstr).map { case (objectId, revision) =>
           defining(JGitUtil.getRevCommitFromId(git, objectId)) { revCommit =>
+            val lastModifiedCommit = if(path == ".") revCommit else JGitUtil.getLastModifiedCommit(git, revCommit, path)
             // get files
             val files = JGitUtil.getFileList(git, revision, path)
             val parentPath = if (path == ".") Nil else path.split("/").toList
@@ -329,8 +441,13 @@ trait RepositoryViewerControllerBase extends ControllerBase {
 
             repo.html.files(revision, repository,
               if(path == ".") Nil else path.split("/").toList, // current path
-              new JGitUtil.CommitInfo(revCommit), // latest commit
-              files, readme, hasWritePermission(repository.owner, repository.name, context.loginAccount))
+              context.loginAccount match {
+                case None => List()
+                case account: Option[model.Account] => getGroupsByUserName(account.get.userName)
+              }, // groups of current user
+              new JGitUtil.CommitInfo(lastModifiedCommit), // last modified commit
+              files, readme, hasWritePermission(repository.owner, repository.name, context.loginAccount),
+              flash.get("info"), flash.get("error"))
           }
         } getOrElse NotFound
       }
@@ -350,7 +467,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         val builder  = DirCache.newInCore.builder()
         val inserter = git.getRepository.newObjectInserter()
         val headName = s"refs/heads/${branch}"
-        val headTip  = git.getRepository.resolve(s"refs/heads/${branch}")
+        val headTip  = git.getRepository.resolve(headName)
 
         JGitUtil.processTree(git, headTip){ (path, tree) =>
           if(!newPath.exists(_ == path) && !oldPath.exists(_ == path)){
@@ -365,7 +482,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         builder.finish()
 
         val commitId = JGitUtil.createNewCommit(git, inserter, headTip, builder.getDirCache.writeTree(inserter),
-          loginAccount.fullName, loginAccount.mailAddress, message)
+          headName, loginAccount.fullName, loginAccount.mailAddress, message)
 
         inserter.flush()
         inserter.release()
@@ -378,6 +495,9 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         //refUpdate.setRefLogMessage("merged", true)
         refUpdate.update()
 
+        // update pull request
+        updatePullRequests(repository.owner, repository.name, branch)
+
         // record activity
         recordPushActivity(repository.owner, repository.name, loginAccount.userName, branch,
           List(new CommitInfo(JGitUtil.getRevCommitFromId(git, commitId))))
@@ -414,7 +534,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
   }
 
-  private def archiveRepository(name: String, suffix: String, repository: RepositoryService.RepositoryInfo): File = {
+  private def archiveRepository(name: String, suffix: String, repository: RepositoryService.RepositoryInfo): Unit = {
     val revision = name.stripSuffix(suffix)
     val workDir = getDownloadWorkDir(repository.owner, repository.name, session.getId)
     if(workDir.exists) {
@@ -422,21 +542,26 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
     workDir.mkdirs
 
-    val file = new File(workDir, repository.name + "-" +
-      (if(revision.length == 40) revision.substring(0, 10) else revision).replace('/', '_') + suffix)
+    val filename = repository.name + "-" +
+      (if(revision.length == 40) revision.substring(0, 10) else revision).replace('/', '_') + suffix
 
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(revision))
-      using(new java.io.FileOutputStream(file))  { out =>
+
+      contentType = "application/octet-stream"
+      response.setHeader("Content-Disposition", s"attachment; filename=${filename}")
+      response.setBufferSize(1024 * 1024);
+
       git.archive
          .setFormat(suffix.tail)
          .setTree(revCommit.getTree)
-           .setOutputStream(out)
+         .setOutputStream(response.getOutputStream)
          .call()
-      }
-      contentType = "application/octet-stream"
-      response.setHeader("Content-Disposition", s"attachment; filename=${file.getName}")
-      file
+
+      Unit
     }
   }
+
+  private def isEditable(owner: String, repository: String, author: String)(implicit context: app.Context): Boolean =
+    hasWritePermission(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
 }

src/main/scala/app/SystemSettingsController.scala

@@ -3,14 +3,8 @@ package app
 import service.{AccountService, SystemSettingsService}
 import SystemSettingsService._
 import util.AdminAuthenticator
-import util.Directory._
-import util.ControlUtil._
 import jp.sf.amateras.scalatra.forms._
 import ssh.SshServer
-import org.apache.commons.io.FileUtils
-import java.io.FileInputStream
-import plugin.{Plugin, PluginSystem}
-import org.scalatra.Ok
 
 class SystemSettingsController extends SystemSettingsControllerBase
   with AccountService with AdminAuthenticator
@@ -20,7 +14,10 @@ trait SystemSettingsControllerBase extends ControllerBase {
 
   private val form = mapping(
     "baseUrl"                  -> trim(label("Base URL", optional(text()))),
+    "information"              -> trim(label("Information", optional(text()))),
     "allowAccountRegistration" -> trim(label("Account registration", boolean())),
+    "allowAnonymousAccess"     -> trim(label("Anonymous access", boolean())),
+    "isCreateRepoOptionPublic" -> trim(label("Default option to create a new repository", boolean())),
     "gravatar"                 -> trim(label("Gravatar", boolean())),
     "notification"             -> trim(label("Notification", boolean())),
     "ssh"                      -> trim(label("SSH access", boolean())),
@@ -46,6 +43,7 @@ trait SystemSettingsControllerBase extends ControllerBase {
         "fullNameAttribute"        -> trim(label("Full name attribute", optional(text()))),
         "mailAttribute"            -> trim(label("Mail address attribute", optional(text()))),
         "tls"                      -> trim(label("Enable TLS", optional(boolean()))),
+        "ssl"                      -> trim(label("Enable SSL", optional(boolean()))),
         "keystore"                 -> trim(label("Keystore", optional(text())))
     )(Ldap.apply))
   )(SystemSettings.apply).verifying { settings =>
@@ -83,103 +81,4 @@ trait SystemSettingsControllerBase extends ControllerBase {
     redirect("/admin/system")
   })
 
-  get("/admin/plugins")(adminOnly {
-    val installedPlugins = plugin.PluginSystem.plugins
-    val updatablePlugins = getAvailablePlugins(installedPlugins).filter(_.status == "updatable")
-    admin.plugins.html.installed(installedPlugins, updatablePlugins)
-  })
-
-  post("/admin/plugins/_update", pluginForm)(adminOnly { form =>
-    deletePlugins(form.pluginIds)
-    installPlugins(form.pluginIds)
-    redirect("/admin/plugins")
-  })
-
-  post("/admin/plugins/_delete", pluginForm)(adminOnly { form =>
-    deletePlugins(form.pluginIds)
-    redirect("/admin/plugins")
-  })
-
-  get("/admin/plugins/available")(adminOnly {
-    val installedPlugins = plugin.PluginSystem.plugins
-    val availablePlugins = getAvailablePlugins(installedPlugins).filter(_.status == "available")
-    admin.plugins.html.available(availablePlugins)
-  })
-
-  post("/admin/plugins/_install", pluginForm)(adminOnly { form =>
-    installPlugins(form.pluginIds)
-    redirect("/admin/plugins")
-  })
-
-//  get("/admin/plugins/console")(adminOnly {
-//    admin.plugins.html.console()
-//  })
-//
-//  post("/admin/plugins/console")(adminOnly {
-//    val script = request.getParameter("script")
-//    val result = plugin.JavaScriptPlugin.evaluateJavaScript(script)
-//    Ok(result)
-//  })
-
-  // TODO Move these methods to PluginSystem or Service?
-  private def deletePlugins(pluginIds: List[String]): Unit = {
-    pluginIds.foreach { pluginId =>
-      plugin.PluginSystem.uninstall(pluginId)
-      val dir = new java.io.File(PluginHome, pluginId)
-      if(dir.exists && dir.isDirectory){
-        FileUtils.deleteQuietly(dir)
-        PluginSystem.uninstall(pluginId)
-      }
-    }
-  }
-
-  private def installPlugins(pluginIds: List[String]): Unit = {
-    val dir = getPluginCacheDir()
-    val installedPlugins = plugin.PluginSystem.plugins
-    getAvailablePlugins(installedPlugins).filter(x => pluginIds.contains(x.id)).foreach { plugin =>
-      val pluginDir = new java.io.File(PluginHome, plugin.id)
-      if(!pluginDir.exists){
-        FileUtils.copyDirectory(new java.io.File(dir, plugin.repository + "/" + plugin.id), pluginDir)
-      }
-      PluginSystem.installPlugin(plugin.id)
-    }
-  }
-
-  private def getAvailablePlugins(installedPlugins: List[Plugin]): List[SystemSettingsControllerBase.AvailablePlugin] = {
-    val repositoryRoot = getPluginCacheDir()
-
-    if(repositoryRoot.exists && repositoryRoot.isDirectory){
-      PluginSystem.repositories.flatMap { repo =>
-        val repoDir = new java.io.File(repositoryRoot, repo.id)
-        if(repoDir.exists && repoDir.isDirectory){
-          repoDir.listFiles.filter(d => d.isDirectory && !d.getName.startsWith(".")).map { plugin =>
-            val propertyFile = new java.io.File(plugin, "plugin.properties")
-            val properties = new java.util.Properties()
-            if(propertyFile.exists && propertyFile.isFile){
-              using(new FileInputStream(propertyFile)){ in =>
-                properties.load(in)
-              }
-            }
-            SystemSettingsControllerBase.AvailablePlugin(
-              repository  = repo.id,
-              id          = properties.getProperty("id"),
-              version     = properties.getProperty("version"),
-              author      = properties.getProperty("author"),
-              url         = properties.getProperty("url"),
-              description = properties.getProperty("description"),
-              status      = installedPlugins.find(_.id == properties.getProperty("id")) match {
-                case Some(x) if(PluginSystem.isUpdatable(x.version, properties.getProperty("version")))=> "updatable"
-                case Some(x) => "installed"
-                case None    => "available"
-              })
-          }
-        } else Nil
-      }
-    } else Nil
-  }
-}
-
-object SystemSettingsControllerBase {
-  case class AvailablePlugin(repository: String, id: String, version: String,
-                             author: String, url: String, description: String, status: String)
 }

src/main/scala/app/UserManagementController.scala

@@ -49,7 +49,7 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
     "url"         -> trim(label("URL"          ,optional(text(maxlength(200))))),
     "fileId"      -> trim(label("File ID"      ,optional(text()))),
     "clearImage"  -> trim(label("Clear image"  ,boolean())),
-    "removed"     -> trim(label("Disable"      ,boolean()))
+    "removed"     -> trim(label("Disable"      ,boolean(disableByNotYourself("userName"))))
   )(EditUserForm.apply)
 
   val newGroupForm = mapping(
@@ -190,4 +190,14 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
     }
   }
 
+  protected def disableByNotYourself(paramName: String): Constraint = new Constraint() {
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
+      params.get(paramName).flatMap { userName =>
+        if(userName == context.loginAccount.get.userName)
+          Some("You can't disable your account yourself")
+        else
+          None
+      }
+    }
+  }
 }

src/main/scala/app/WikiController.scala

@@ -164,8 +164,7 @@ trait WikiControllerBase extends ControllerBase {
     val path = multiParams("splat").head
 
     getFileContent(repository.owner, repository.name, path).map { bytes =>
-      contentType = FileUtil.getContentType(path, bytes)
-      bytes
+      RawData(FileUtil.getContentType(path, bytes), bytes)
     } getOrElse NotFound
   })
 

src/main/scala/model/BasicTemplate.scala

@@ -44,4 +44,11 @@ protected[model] trait TemplateComponent { self: Profile =>
       byRepository(userName, repositoryName) && (this.milestoneId === milestoneId)
   }
 
+  trait CommitTemplate extends BasicTemplate { self: Table[_] =>
+    val commitId = column[String]("COMMIT_ID")
+
+    def byCommit(owner: String, repository: String, commitId: String) =
+      byRepository(owner, repository) && (this.commitId === commitId)
+  }
+
 }

src/main/scala/model/Comment.scala

@@ -0,0 +1,78 @@
+package model
+
+trait Comment {
+  val commentedUserName: String
+  val registeredDate: java.util.Date
+}
+
+trait IssueCommentComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
+
+  lazy val IssueComments = new TableQuery(tag => new IssueComments(tag)){
+    def autoInc = this returning this.map(_.commentId)
+  }
+
+  class IssueComments(tag: Tag) extends Table[IssueComment](tag, "ISSUE_COMMENT") with IssueTemplate {
+    val commentId = column[Int]("COMMENT_ID", O AutoInc)
+    val action = column[String]("ACTION")
+    val commentedUserName = column[String]("COMMENTED_USER_NAME")
+    val content = column[String]("CONTENT")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
+    def * = (userName, repositoryName, issueId, commentId, action, commentedUserName, content, registeredDate, updatedDate) <> (IssueComment.tupled, IssueComment.unapply)
+
+    def byPrimaryKey(commentId: Int) = this.commentId === commentId.bind
+  }
+}
+
+case class IssueComment (
+  userName: String,
+  repositoryName: String,
+  issueId: Int,
+  commentId: Int = 0,
+  action: String,
+  commentedUserName: String,
+  content: String,
+  registeredDate: java.util.Date,
+  updatedDate: java.util.Date
+) extends Comment
+
+trait CommitCommentComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
+
+  lazy val CommitComments = new TableQuery(tag => new CommitComments(tag)){
+    def autoInc = this returning this.map(_.commentId)
+  }
+
+  class CommitComments(tag: Tag) extends Table[CommitComment](tag, "COMMIT_COMMENT") with CommitTemplate {
+    val commentId = column[Int]("COMMENT_ID", O AutoInc)
+    val commentedUserName = column[String]("COMMENTED_USER_NAME")
+    val content = column[String]("CONTENT")
+    val fileName = column[Option[String]]("FILE_NAME")
+    val oldLine = column[Option[Int]]("OLD_LINE_NUMBER")
+    val newLine = column[Option[Int]]("NEW_LINE_NUMBER")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
+    val pullRequest = column[Boolean]("PULL_REQUEST")
+    def * = (userName, repositoryName, commitId, commentId, commentedUserName, content, fileName, oldLine, newLine, registeredDate, updatedDate, pullRequest) <> (CommitComment.tupled, CommitComment.unapply)
+
+    def byPrimaryKey(commentId: Int) = this.commentId === commentId.bind
+  }
+}
+
+case class CommitComment(
+  userName: String,
+  repositoryName: String,
+  commitId: String,
+  commentId: Int = 0,
+  commentedUserName: String,
+  content: String,
+  fileName: Option[String],
+  oldLine: Option[Int],
+  newLine: Option[Int],
+  registeredDate: java.util.Date,
+  updatedDate: java.util.Date,
+  pullRequest: Boolean
+ ) extends Comment

src/main/scala/model/IssueComment.scala

@@ -1,34 +0,0 @@
-package model
-
-trait IssueCommentComponent extends TemplateComponent { self: Profile =>
-  import profile.simple._
-  import self._
-
-  lazy val IssueComments = new TableQuery(tag => new IssueComments(tag)){
-    def autoInc = this returning this.map(_.commentId)
-  }
-
-  class IssueComments(tag: Tag) extends Table[IssueComment](tag, "ISSUE_COMMENT") with IssueTemplate {
-    val commentId = column[Int]("COMMENT_ID", O AutoInc)
-    val action = column[String]("ACTION")
-    val commentedUserName = column[String]("COMMENTED_USER_NAME")
-    val content = column[String]("CONTENT")
-    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
-    val updatedDate = column[java.util.Date]("UPDATED_DATE")
-    def * = (userName, repositoryName, issueId, commentId, action, commentedUserName, content, registeredDate, updatedDate) <> (IssueComment.tupled, IssueComment.unapply)
-
-    def byPrimaryKey(commentId: Int) = this.commentId === commentId.bind
-  }
-}
-
-case class IssueComment(
-  userName: String,
-  repositoryName: String,
-  issueId: Int,
-  commentId: Int = 0,
-  action: String,
-  commentedUserName: String,
-  content: String,
-  registeredDate: java.util.Date,
-  updatedDate: java.util.Date
-)

src/main/scala/model/Labels.scala

@@ -31,7 +31,7 @@ case class Label(
     if(Integer.parseInt(r, 16) + Integer.parseInt(g, 16) + Integer.parseInt(b, 16) > 408){
       "000000"
     } else {
-      "FFFFFF"
+      "ffffff"
     }
   }
 }

src/main/scala/model/Plugin.scala

@@ -0,0 +1,19 @@
+package model
+
+trait PluginComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
+
+  lazy val Plugins = TableQuery[Plugins]
+
+  class Plugins(tag: Tag) extends Table[Plugin](tag, "PLUGIN"){
+    val pluginId = column[String]("PLUGIN_ID", O PrimaryKey)
+    val version = column[String]("VERSION")
+    def * = (pluginId, version) <> (Plugin.tupled, Plugin.unapply)
+  }
+}
+
+case class Plugin(
+  pluginId: String,
+  version: String
+)

src/main/scala/model/Profile.scala

@@ -22,6 +22,7 @@ object Profile extends {
 } with AccountComponent
   with ActivityComponent
   with CollaboratorComponent
+  with CommitCommentComponent
   with GroupMemberComponent
   with IssueComponent
   with IssueCommentComponent
@@ -31,7 +32,8 @@ object Profile extends {
   with PullRequestComponent
   with RepositoryComponent
   with SshKeyComponent
-  with WebHookComponent with Profile {
+  with WebHookComponent
+  with PluginComponent with Profile {
 
   /**
    * Returns system date.

src/main/scala/plugin/JavaScriptPlugin.scala

@@ -1,117 +0,0 @@
-package plugin
-
-import org.mozilla.javascript.{Context => JsContext}
-import org.mozilla.javascript.{Function => JsFunction}
-import scala.collection.mutable.ListBuffer
-import plugin.PluginSystem._
-import util.ControlUtil._
-import plugin.PluginSystem.GlobalMenu
-import plugin.PluginSystem.RepositoryAction
-import plugin.PluginSystem.Action
-import plugin.PluginSystem.RepositoryMenu
-
-class JavaScriptPlugin(val id: String, val version: String,
-                       val author: String, val url: String, val description: String) extends Plugin {
-
-  private val repositoryMenuList   = ListBuffer[RepositoryMenu]()
-  private val globalMenuList       = ListBuffer[GlobalMenu]()
-  private val repositoryActionList = ListBuffer[RepositoryAction]()
-  private val globalActionList     = ListBuffer[Action]()
-
-  def repositoryMenus   : List[RepositoryMenu]   = repositoryMenuList.toList
-  def globalMenus       : List[GlobalMenu]       = globalMenuList.toList
-  def repositoryActions : List[RepositoryAction] = repositoryActionList.toList
-  def globalActions     : List[Action]           = globalActionList.toList
-
-  def addRepositoryMenu(label: String, name: String, url: String, icon: String, condition: JsFunction): Unit = {
-    repositoryMenuList += RepositoryMenu(label, name, url, icon, (context) => {
-      val context = JsContext.enter()
-      try {
-        condition.call(context, condition, condition, Array(context)).asInstanceOf[Boolean]
-      } finally {
-        JsContext.exit()
-      }
-    })
-  }
-
-  def addGlobalMenu(label: String, url: String, icon: String, condition: JsFunction): Unit = {
-    globalMenuList += GlobalMenu(label, url, icon, (context) => {
-      val context = JsContext.enter()
-      try {
-        condition.call(context, condition, condition, Array(context)).asInstanceOf[Boolean]
-      } finally {
-        JsContext.exit()
-      }
-    })
-  }
-
-  def addGlobalAction(path: String, function: JsFunction): Unit = {
-    globalActionList += Action(path, (request, response) => {
-      val context = JsContext.enter()
-      try {
-        function.call(context, function, function, Array(request, response))
-      } finally {
-        JsContext.exit()
-      }
-    })
-  }
-
-  def addRepositoryAction(path: String, function: JsFunction): Unit = {
-    repositoryActionList += RepositoryAction(path, (request, response, repository) => {
-      val context = JsContext.enter()
-      try {
-        function.call(context, function, function, Array(request, response, repository))
-      } finally {
-        JsContext.exit()
-      }
-    })
-  }
-
-  object db {
-    // TODO Use JavaScript Map instead of java.util.Map
-    def select(sql: String): Array[java.util.Map[String, String]] = {
-      defining(PluginConnectionHolder.threadLocal.get){ conn =>
-        using(conn.prepareStatement(sql)){ stmt =>
-          using(stmt.executeQuery()){ rs =>
-            val list = new java.util.ArrayList[java.util.Map[String, String]]()
-            while(rs.next){
-              defining(rs.getMetaData){ meta =>
-                val map = new java.util.HashMap[String, String]()
-                Range(1, meta.getColumnCount).map { i =>
-                  val name = meta.getColumnName(i)
-                  map.put(name, rs.getString(name))
-                }
-                list.add(map)
-              }
-            }
-            list.toArray(new Array[java.util.Map[String, String]](list.size))
-          }
-        }
-      }
-    }
-  }
-
-}
-
-object JavaScriptPlugin {
-
-  def define(id: String, version: String, author: String, url: String, description: String)
-    = new JavaScriptPlugin(id, version, author, url, description)
-
-  def evaluateJavaScript(script: String, vars: Map[String, Any] = Map.empty): Any = {
-    val context = JsContext.enter()
-    try {
-      val scope = context.initStandardObjects()
-      scope.put("PluginSystem", scope, PluginSystem)
-      scope.put("JavaScriptPlugin", scope, this)
-      vars.foreach { case (key, value) =>
-        scope.put(key, scope, value)
-      }
-      val result = context.evaluateString(scope, script, "<cmd>", 1, null)
-      result
-    } finally {
-      JsContext.exit
-    }
-  }
-
-}

src/main/scala/plugin/Plugin.scala

@@ -1,21 +0,0 @@
-package plugin
-
-import plugin.PluginSystem._
-import java.sql.Connection
-
-trait Plugin {
-  val id: String
-  val version: String
-  val author: String
-  val url: String
-  val description: String
-
-  def repositoryMenus   : List[RepositoryMenu]
-  def globalMenus       : List[GlobalMenu]
-  def repositoryActions : List[RepositoryAction]
-  def globalActions     : List[Action]
-}
-
-object PluginConnectionHolder {
-  val threadLocal = new ThreadLocal[Connection]
-}

src/main/scala/plugin/PluginSystem.scala

@@ -1,125 +0,0 @@
-package plugin
-
-import app.Context
-import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
-import org.slf4j.LoggerFactory
-import java.util.concurrent.atomic.AtomicBoolean
-import util.Directory._
-import util.ControlUtil._
-import org.apache.commons.io.FileUtils
-import util.JGitUtil
-import org.eclipse.jgit.api.Git
-import service.RepositoryService.RepositoryInfo
-
-/**
- * Provides extension points to plug-ins.
- */
-object PluginSystem {
-
-  private val logger = LoggerFactory.getLogger(PluginSystem.getClass)
-
-  private val initialized = new AtomicBoolean(false)
-  private val pluginsMap = scala.collection.mutable.Map[String, Plugin]()
-  private val repositoriesList = scala.collection.mutable.ListBuffer[PluginRepository]()
-
-  def install(plugin: Plugin): Unit = {
-    pluginsMap.put(plugin.id, plugin)
-  }
-
-  def plugins: List[Plugin] = pluginsMap.values.toList
-
-  def uninstall(id: String): Unit = {
-    pluginsMap.remove(id)
-  }
-
-  def repositories: List[PluginRepository] = repositoriesList.toList
-
-  /**
-   * Initializes the plugin system. Load scripts from GITBUCKET_HOME/plugins.
-   */
-  def init(): Unit = {
-    if(initialized.compareAndSet(false, true)){
-      // Load installed plugins
-      val pluginDir = new java.io.File(PluginHome)
-      if(pluginDir.exists && pluginDir.isDirectory){
-        pluginDir.listFiles.filter(f => f.isDirectory && !f.getName.startsWith(".")).foreach { dir =>
-          installPlugin(dir.getName)
-        }
-      }
-      // Add default plugin repositories
-      repositoriesList += PluginRepository("central", "https://github.com/takezoe/gitbucket_plugins.git")
-    }
-  }
-
-  // TODO Method name seems to not so good.
-  def installPlugin(id: String): Unit = {
-    val pluginDir = new java.io.File(PluginHome)
-    val javaScriptFile = new java.io.File(pluginDir, id + "/plugin.js")
-
-    if(javaScriptFile.exists && javaScriptFile.isFile){
-      val properties = new java.util.Properties()
-      using(new java.io.FileInputStream(new java.io.File(pluginDir, id + "/plugin.properties"))){ in =>
-        properties.load(in)
-      }
-
-      val script = FileUtils.readFileToString(javaScriptFile, "UTF-8")
-      try {
-        JavaScriptPlugin.evaluateJavaScript(script, Map(
-          "id"          -> properties.getProperty("id"),
-          "version"     -> properties.getProperty("version"),
-          "author"      -> properties.getProperty("author"),
-          "url"         -> properties.getProperty("url"),
-          "description" -> properties.getProperty("description")
-        ))
-      } catch {
-        case e: Exception => logger.warn(s"Error in plugin loading for ${javaScriptFile.getAbsolutePath}", e)
-      }
-    }
-  }
-
-  def repositoryMenus   : List[RepositoryMenu]   = pluginsMap.values.flatMap(_.repositoryMenus).toList
-  def globalMenus       : List[GlobalMenu]       = pluginsMap.values.flatMap(_.globalMenus).toList
-  def repositoryActions : List[RepositoryAction] = pluginsMap.values.flatMap(_.repositoryActions).toList
-  def globalActions     : List[Action]           = pluginsMap.values.flatMap(_.globalActions).toList
-
-  // Case classes to hold plug-ins information internally in GitBucket
-  case class PluginRepository(id: String, url: String)
-  case class GlobalMenu(label: String, url: String, icon: String, condition: Context => Boolean)
-  case class RepositoryMenu(label: String, name: String, url: String, icon: String, condition: Context => Boolean)
-  case class Action(path: String, function: (HttpServletRequest, HttpServletResponse) => Any)
-  case class RepositoryAction(path: String, function: (HttpServletRequest, HttpServletResponse, RepositoryInfo) => Any)
-
-  /**
-   * Checks whether the plugin is updatable.
-   */
-  def isUpdatable(oldVersion: String, newVersion: String): Boolean = {
-    if(oldVersion == newVersion){
-      false
-    } else {
-      val dim1 = oldVersion.split("\\.").map(_.toInt)
-      val dim2 = newVersion.split("\\.").map(_.toInt)
-      dim1.zip(dim2).foreach { case (a, b) =>
-        if(a < b){
-          return true
-        } else if(a > b){
-          return false
-        }
-      }
-      return false
-    }
-  }
-
-  // TODO This is a test
-//  addGlobalMenu("Google", "http://www.google.co.jp/", "data:image/png;base64,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")
-//    { context => context.loginAccount.isDefined }
-//
-//  addRepositoryMenu("Board", "board", "/board", "data:image/png;base64,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")
-//    { context => true}
-//
-//  addGlobalAction("/hello"){ (request, response) =>
-//    "Hello World!"
-//  }
-
-}
-
-

src/main/scala/plugin/PluginUpdateJob.scala

@@ -1,66 +0,0 @@
-package plugin
-
-import util.Directory._
-import org.eclipse.jgit.api.Git
-import org.slf4j.LoggerFactory
-import org.quartz.{Scheduler, JobExecutionContext, Job}
-import org.quartz.JobBuilder._
-import org.quartz.TriggerBuilder._
-import org.quartz.SimpleScheduleBuilder._
-
-class PluginUpdateJob extends Job {
-
-  private val logger = LoggerFactory.getLogger(classOf[PluginUpdateJob])
-  private var failedCount = 0
-
-  /**
-   * Clone or pull all plugin repositories
-   *
-   * TODO Support plugin repository access through the proxy server
-   */
-  override def execute(context: JobExecutionContext): Unit = {
-    try {
-      if(failedCount > 3){
-        logger.error("Skip plugin information updating because failed count is over limit")
-      } else {
-        logger.info("Start plugin information updating")
-        PluginSystem.repositories.foreach { repository =>
-          logger.info(s"Updating ${repository.id}: ${repository.url}...")
-          val dir = getPluginCacheDir()
-          val repo = new java.io.File(dir, repository.id)
-          if(repo.exists){
-            // pull if the repository is already cloned
-            Git.open(repo).pull().call()
-          } else {
-            // clone if the repository is not exist
-            Git.cloneRepository().setURI(repository.url).setDirectory(repo).call()
-          }
-        }
-        logger.info("End plugin information updating")
-      }
-    } catch {
-      case e: Exception => {
-        failedCount = failedCount + 1
-        logger.error("Failed to update plugin information", e)
-      }
-    }
-  }
-}
-
-object PluginUpdateJob {
-
-  def schedule(scheduler: Scheduler): Unit = {
-    val job = newJob(classOf[PluginUpdateJob])
-      .withIdentity("pluginUpdateJob")
-      .build()
-
-    val trigger = newTrigger()
-      .withIdentity("pluginUpdateTrigger")
-      .startNow()
-      .withSchedule(simpleSchedule().withIntervalInHours(24).repeatForever())
-      .build()
-
-    scheduler.scheduleJob(job, trigger)
-  }
-
-}

src/main/scala/plugin/ScalaPlugin.scala

@@ -1,39 +0,0 @@
-package plugin
-
-import app.Context
-import scala.collection.mutable.ListBuffer
-import plugin.PluginSystem._
-import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
-import service.RepositoryService.RepositoryInfo
-
-// TODO This is a sample implementation for Scala based plug-ins.
-class ScalaPlugin(val id: String, val version: String,
-                  val author: String, val url: String, val description: String) extends Plugin {
-
-  private val repositoryMenuList   = ListBuffer[RepositoryMenu]()
-  private val globalMenuList       = ListBuffer[GlobalMenu]()
-  private val repositoryActionList = ListBuffer[RepositoryAction]()
-  private val globalActionList     = ListBuffer[Action]()
-
-  def repositoryMenus   : List[RepositoryMenu]   = repositoryMenuList.toList
-  def globalMenus       : List[GlobalMenu]       = globalMenuList.toList
-  def repositoryActions : List[RepositoryAction] = repositoryActionList.toList
-  def globalActions     : List[Action]           = globalActionList.toList
-
-  def addRepositoryMenu(label: String, name: String, url: String, icon: String)(condition: (Context) => Boolean): Unit = {
-    repositoryMenuList += RepositoryMenu(label, name, url, icon, condition)
-  }
-
-  def addGlobalMenu(label: String, url: String, icon: String)(condition: (Context) => Boolean): Unit = {
-    globalMenuList += GlobalMenu(label, url, icon, condition)
-  }
-
-  def addGlobalAction(path: String)(function: (HttpServletRequest, HttpServletResponse) => Any): Unit = {
-    globalActionList += Action(path, function)
-  }
-
-  def addRepositoryAction(path: String)(function: (HttpServletRequest, HttpServletResponse, RepositoryInfo) => Any): Unit = {
-    repositoryActionList += RepositoryAction(path, function)
-  }
-
-}

src/main/scala/service/AccountService.scala

@@ -168,6 +168,11 @@ trait AccountService {
     Repositories.filter(_.userName === userName.bind).delete
   }
 
+  def getGroupNames(userName: String)(implicit s: Session): List[String] = {
+    List(userName) ++
+      Collaborators.filter(_.collaboratorName === userName.bind).sortBy(_.userName).map(_.userName).list
+  }
+
 }
 
 object AccountService extends AccountService

src/main/scala/service/ActivityService.scala

@@ -95,6 +95,15 @@ trait ActivityService {
       Some(cut(comment, 200)),
       currentDate)
 
+  def recordCommentCommitActivity(userName: String, repositoryName: String, activityUserName: String, commitId: String, comment: String)
+                                 (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
+      "comment_commit",
+      s"[user:${activityUserName}] commented on commit [commit:${userName}/${repositoryName}@${commitId}]",
+      Some(cut(comment, 200)),
+      currentDate
+    )
+
   def recordCreateWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String)
                                   (implicit s: Session): Unit =
     Activities insert Activity(userName, repositoryName, activityUserName,
@@ -151,10 +160,10 @@ trait ActivityService {
       None,
       currentDate)
 
-  def recordForkActivity(userName: String, repositoryName: String, activityUserName: String)(implicit s: Session): Unit =
+  def recordForkActivity(userName: String, repositoryName: String, activityUserName: String, forkedUserName: String)(implicit s: Session): Unit = 
     Activities insert Activity(userName, repositoryName, activityUserName,
       "fork",
-      s"[user:${activityUserName}] forked [repo:${userName}/${repositoryName}] to [repo:${activityUserName}/${repositoryName}]",
+      s"[user:${activityUserName}] forked [repo:${userName}/${repositoryName}] to [repo:${forkedUserName}/${repositoryName}]",
       None,
       currentDate)
 

src/main/scala/service/CommitsService.scala

@@ -0,0 +1,52 @@
+package service
+
+import scala.slick.jdbc.{StaticQuery => Q}
+import Q.interpolation
+
+import model.Profile._
+import profile.simple._
+import model.CommitComment
+import util.Implicits._
+import util.StringUtil._
+
+
+trait CommitsService {
+
+  def getCommitComments(owner: String, repository: String, commitId: String, pullRequest: Boolean)(implicit s: Session) =
+    CommitComments filter {
+      t => t.byCommit(owner, repository, commitId) && (t.pullRequest === pullRequest || pullRequest)
+    } list
+
+  def getCommitComment(owner: String, repository: String, commentId: String)(implicit s: Session) =
+    if (commentId forall (_.isDigit))
+      CommitComments filter { t =>
+        t.byPrimaryKey(commentId.toInt) && t.byRepository(owner, repository)
+      } firstOption
+    else
+      None
+
+  def createCommitComment(owner: String, repository: String, commitId: String, loginUser: String,
+    content: String, fileName: Option[String], oldLine: Option[Int], newLine: Option[Int], pullRequest: Boolean)(implicit s: Session): Int =
+    CommitComments.autoInc insert CommitComment(
+      userName          = owner,
+      repositoryName    = repository,
+      commitId          = commitId,
+      commentedUserName = loginUser,
+      content           = content,
+      fileName          = fileName,
+      oldLine           = oldLine,
+      newLine           = newLine,
+      registeredDate    = currentDate,
+      updatedDate       = currentDate,
+      pullRequest       = pullRequest)
+
+  def updateCommitComment(commentId: Int, content: String)(implicit s: Session) =
+    CommitComments
+      .filter (_.byPrimaryKey(commentId))
+      .map { t =>
+      t.content -> t.updatedDate
+    }.update (content, currentDate)
+
+  def deleteCommitComment(commentId: Int)(implicit s: Session) =
+    CommitComments filter (_.byPrimaryKey(commentId)) delete
+}

src/main/scala/service/IssuesService.scala

@@ -43,14 +43,13 @@ trait IssuesService {
    * Returns the count of the search result against  issues.
    *
    * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned" or "created_by", value is the user name)
    * @param onlyPullRequest if true then counts only pull request, false then counts both of issue and pull request.
    * @param repos Tuple of the repository owner and the repository name
    * @return the count of the search result
    */
-  def countIssue(condition: IssueSearchCondition, filterUser: Map[String, String], onlyPullRequest: Boolean,
+  def countIssue(condition: IssueSearchCondition, onlyPullRequest: Boolean,
                  repos: (String, String)*)(implicit s: Session): Int =
-    Query(searchIssueQuery(repos, condition, filterUser, onlyPullRequest).length).first
+    Query(searchIssueQuery(repos, condition, onlyPullRequest).length).first
 
   /**
    * Returns the Map which contains issue count for each labels.
@@ -58,13 +57,12 @@ trait IssuesService {
    * @param owner the repository owner
    * @param repository the repository name
    * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned" or "created_by", value is the user name)
    * @return the Map which contains issue count for each labels (key is label name, value is issue count)
    */
   def countIssueGroupByLabels(owner: String, repository: String, condition: IssueSearchCondition,
                               filterUser: Map[String, String])(implicit s: Session): Map[String, Int] = {
 
-    searchIssueQuery(Seq(owner -> repository), condition.copy(labels = Set.empty), filterUser, false)
+    searchIssueQuery(Seq(owner -> repository), condition.copy(labels = Set.empty), false)
       .innerJoin(IssueLabels).on { (t1, t2) =>
         t1.byIssue(t2.userName, t2.repositoryName, t2.issueId)
       }
@@ -79,47 +77,22 @@ trait IssuesService {
       }
       .toMap
   }
-  /**
-   * Returns list which contains issue count for each repository.
-   * If the issue does not exist, its repository is not included in the result.
-   *
-   * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned" or "created_by", value is the user name)
-   * @param onlyPullRequest if true then returns only pull request, false then returns both of issue and pull request.
-   * @param repos Tuple of the repository owner and the repository name
-   * @return list which contains issue count for each repository
-   */
-  def countIssueGroupByRepository(
-      condition: IssueSearchCondition, filterUser: Map[String, String], onlyPullRequest: Boolean,
-      repos: (String, String)*)(implicit s: Session): List[(String, String, Int)] = {
-    searchIssueQuery(repos, condition.copy(repo = None), filterUser, onlyPullRequest)
-      .groupBy { t =>
-        t.userName -> t.repositoryName
-      }
-      .map { case (repo, t) =>
-        (repo._1, repo._2, t.length)
-      }
-      .sortBy(_._3 desc)
-      .list
-  }
 
   /**
    * Returns the search result against  issues.
    *
    * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned", "created_by" or "not_created_by", value is the user name)
-   * @param onlyPullRequest if true then returns only pull request, false then returns both of issue and pull request.
+   * @param pullRequest if true then returns only pull requests, false then returns only issues.
    * @param offset the offset for pagination
    * @param limit the limit for pagination
    * @param repos Tuple of the repository owner and the repository name
    * @return the search result (list of tuples which contain issue, labels and comment count)
    */
-  def searchIssue(condition: IssueSearchCondition, filterUser: Map[String, String], onlyPullRequest: Boolean,
-                  offset: Int, limit: Int, repos: (String, String)*)
-                 (implicit s: Session): List[(Issue, List[Label], Int)] = {
+  def searchIssue(condition: IssueSearchCondition, pullRequest: Boolean, offset: Int, limit: Int, repos: (String, String)*)
+                 (implicit s: Session): List[IssueInfo] = {
 
     // get issues and comment count and labels
-    searchIssueQuery(repos, condition, filterUser, onlyPullRequest)
+    searchIssueQuery(repos, condition, pullRequest)
         .innerJoin(IssueOutline).on { (t1, t2) => t1.byIssue(t2.userName, t2.repositoryName, t2.issueId) }
         .sortBy { case (t1, t2) =>
           (condition.sort match {
@@ -136,8 +109,9 @@ trait IssuesService {
         .drop(offset).take(limit)
         .leftJoin (IssueLabels) .on { case ((t1, t2), t3) => t1.byIssue(t3.userName, t3.repositoryName, t3.issueId) }
         .leftJoin (Labels)      .on { case (((t1, t2), t3), t4) => t3.byLabel(t4.userName, t4.repositoryName, t4.labelId) }
-        .map { case (((t1, t2), t3), t4) =>
-          (t1, t2.commentCount, t4.labelId.?, t4.labelName.?, t4.color.?)
+        .leftJoin (Milestones)  .on { case ((((t1, t2), t3), t4), t5) => t1.byMilestone(t5.userName, t5.repositoryName, t5.milestoneId) }
+        .map { case ((((t1, t2), t3), t4), t5) =>
+          (t1, t2.commentCount, t4.labelId.?, t4.labelName.?, t4.color.?, t5.title.?)
         }
         .list
         .splitWith { (c1, c2) =>
@@ -146,11 +120,12 @@ trait IssuesService {
           c1._1.issueId        == c2._1.issueId
         }
         .map { issues => issues.head match {
-          case (issue, commentCount, _,_,_) =>
-            (issue,
+          case (issue, commentCount, _, _, _, milestone) =>
+            IssueInfo(issue,
              issues.flatMap { t => t._3.map (
                  Label(issue.userName, issue.repositoryName, _, t._4.get, t._5.get)
              )} toList,
+             milestone,
              commentCount)
         }} toList
   }
@@ -158,21 +133,18 @@ trait IssuesService {
   /**
    * Assembles query for conditional issue searching.
    */
-  private def searchIssueQuery(repos: Seq[(String, String)], condition: IssueSearchCondition,
-                               filterUser: Map[String, String], onlyPullRequest: Boolean)(implicit s: Session) =
+  private def searchIssueQuery(repos: Seq[(String, String)], condition: IssueSearchCondition, pullRequest: Boolean)(implicit s: Session) =
     Issues filter { t1 =>
-      condition.repo
-          .map { _.split('/') match { case array => Seq(array(0) -> array(1)) } }
-          .getOrElse (repos)
+      repos
         .map { case (owner, repository) => t1.byRepository(owner, repository) }
         .foldLeft[Column[Boolean]](false) ( _ || _ ) &&
       (t1.closed           === (condition.state == "closed").bind) &&
       (t1.milestoneId      === condition.milestoneId.get.get.bind, condition.milestoneId.flatten.isDefined) &&
       (t1.milestoneId.?    isEmpty, condition.milestoneId == Some(None)) &&
-      (t1.assignedUserName === filterUser("assigned").bind, filterUser.get("assigned").isDefined) &&
-      (t1.openedUserName   === filterUser("created_by").bind, filterUser.get("created_by").isDefined) &&
-      (t1.openedUserName   =!= filterUser("not_created_by").bind, filterUser.get("not_created_by").isDefined) &&
-      (t1.pullRequest      === true.bind, onlyPullRequest) &&
+      (t1.assignedUserName === condition.assigned.get.bind, condition.assigned.isDefined) &&
+      (t1.openedUserName   === condition.author.get.bind, condition.author.isDefined) &&
+      (t1.pullRequest      === pullRequest.bind) &&
+      // Label filter
       (IssueLabels filter { t2 =>
         (t2.byIssue(t1.userName, t1.repositoryName, t1.issueId)) &&
         (t2.labelId in
@@ -180,7 +152,19 @@ trait IssuesService {
             (t3.byRepository(t1.userName, t1.repositoryName)) &&
             (t3.labelName inSetBind condition.labels)
           } map(_.labelId)))
-      } exists, condition.labels.nonEmpty)
+      } exists, condition.labels.nonEmpty) &&
+      // Visibility filter
+      (Repositories filter { t2 =>
+        (t2.byRepository(t1.userName, t1.repositoryName)) &&
+        (t2.isPrivate === (condition.visibility == Some("private")).bind)
+      } exists, condition.visibility.nonEmpty) &&
+      // Organization (group) filter
+      (t1.userName inSetBind condition.groups, condition.groups.nonEmpty) &&
+      // Mentioned filter
+      ((t1.openedUserName === condition.mentioned.get.bind) || t1.assignedUserName === condition.mentioned.get.bind ||
+        (IssueComments filter { t2 =>
+          (t2.byIssue(t1.userName, t1.repositoryName, t1.issueId)) && (t2.commentedUserName === condition.mentioned.get.bind)
+        } exists), condition.mentioned.isDefined)
     }
 
   def createIssue(owner: String, repository: String, loginUser: String, title: String, content: Option[String],
@@ -279,6 +263,7 @@ trait IssuesService {
 
     // Search Issue
     val issues = Issues
+      .filter(_.byRepository(owner, repository))
       .innerJoin(IssueOutline).on { case (t1, t2) =>
         t1.byIssue(t2.userName, t2.repositoryName, t2.issueId)
       }
@@ -294,6 +279,7 @@ trait IssuesService {
 
     // Search IssueComment
     val comments = IssueComments
+      .filter(_.byRepository(owner, repository))
       .innerJoin(Issues).on { case (t1, t2) =>
         t1.byIssue(t2.userName, t2.repositoryName, t2.issueId)
       }
@@ -337,22 +323,64 @@ object IssuesService {
   case class IssueSearchCondition(
       labels: Set[String] = Set.empty,
       milestoneId: Option[Option[Int]] = None,
-      repo: Option[String] = None,
+      author: Option[String] = None,
+      assigned: Option[String] = None,
+      mentioned: Option[String] = None,
       state: String = "open",
       sort: String = "created",
-      direction: String = "desc"){
+      direction: String = "desc",
+      visibility: Option[String] = None,
+      groups: Set[String] = Set.empty){
+
+    def isEmpty: Boolean = {
+      labels.isEmpty && milestoneId.isEmpty && author.isEmpty && assigned.isEmpty &&
+        state == "open" && sort == "created" && direction == "desc" && visibility.isEmpty
+    }
+
+    def nonEmpty: Boolean = !isEmpty
+
+    def toFilterString: String = (
+      List(
+        Some(s"is:${state}"),
+        author.map(author => s"author:${author}"),
+        assigned.map(assignee => s"assignee:${assignee}"),
+        mentioned.map(mentioned => s"mentions:${mentioned}")
+      ).flatten ++
+      labels.map(label => s"label:${label}") ++
+      List(
+        milestoneId.map { _ match {
+          case Some(x) => s"milestone:${milestoneId}"
+          case None    => "no:milestone"
+        }},
+        (sort, direction) match {
+          case ("created" , "desc") => None
+          case ("created" , "asc" ) => Some("sort:created-asc")
+          case ("comments", "desc") => Some("sort:comments-desc")
+          case ("comments", "asc" ) => Some("sort:comments-asc")
+          case ("updated" , "desc") => Some("sort:updated-desc")
+          case ("updated" , "asc" ) => Some("sort:updated-asc")
+        },
+        visibility.map(visibility => s"visibility:${visibility}")
+      ).flatten ++
+      groups.map(group => s"group:${group}")
+    ).mkString(" ")
 
     def toURL: String =
       "?" + List(
         if(labels.isEmpty) None else Some("labels=" + urlEncode(labels.mkString(","))),
-        milestoneId.map { id => "milestone=" + (id match {
-          case Some(x) => x.toString
-          case None    => "none"
-        })},
-        repo.map("for="   + urlEncode(_)),
+        milestoneId.map { _ match {
+          case Some(x) => "milestone=" + x
+          case None    => "milestone=none"
+        }},
+        author   .map(x => "author="    + urlEncode(x)),
+        assigned .map(x => "assigned="  + urlEncode(x)),
+        mentioned.map(x => "mentioned=" + urlEncode(x)),
         Some("state="     + urlEncode(state)),
         Some("sort="      + urlEncode(sort)),
-        Some("direction=" + urlEncode(direction))).flatten.mkString("&")
+        Some("direction=" + urlEncode(direction)),
+        visibility.map(x => "visibility=" + urlEncode(x)),
+        if(groups.isEmpty) None else Some("groups=" + urlEncode(groups.mkString(",")))
+      ).flatten.mkString("&")
 
   }
 
@@ -363,17 +391,63 @@ object IssuesService {
       if(value == null || value.isEmpty || (allow.nonEmpty && !allow.contains(value))) None else Some(value)
     }
 
+    /**
+     * Restores IssueSearchCondition instance from filter query.
+     */
+    def apply(filter: String, milestones: Map[String, Int]): IssueSearchCondition = {
+      val conditions = filter.split("[ 　\t]+").map { x =>
+        val dim = x.split(":")
+        dim(0) -> dim(1)
+      }.groupBy(_._1).map { case (key, values) =>
+        key -> values.map(_._2).toSeq
+      }
+
+      val (sort, direction) = conditions.get("sort").flatMap(_.headOption).getOrElse("created-desc") match {
+        case "created-asc"   => ("created" , "asc" )
+        case "comments-desc" => ("comments", "desc")
+        case "comments-asc"  => ("comments", "asc" )
+        case "updated-desc"  => ("comments", "desc")
+        case "updated-asc"   => ("comments", "asc" )
+        case _               => ("created" , "desc")
+      }
+
+      IssueSearchCondition(
+        conditions.get("label").map(_.toSet).getOrElse(Set.empty),
+        conditions.get("milestone").flatMap(_.headOption) match {
+          case None         => None
+          case Some("none") => Some(None)
+          case Some(x)      => milestones.get(x).map(x => Some(x))
+        },
+        conditions.get("author").flatMap(_.headOption),
+        conditions.get("assignee").flatMap(_.headOption),
+        conditions.get("mentions").flatMap(_.headOption),
+        conditions.get("is").getOrElse(Seq.empty).find(x => x == "open" || x == "closed").getOrElse("open"),
+        sort,
+        direction,
+        conditions.get("visibility").flatMap(_.headOption),
+        conditions.get("group").map(_.toSet).getOrElse(Set.empty)
+      )
+    }
+
+    /**
+     * Restores IssueSearchCondition instance from request parameters.
+     */
     def apply(request: HttpServletRequest): IssueSearchCondition =
       IssueSearchCondition(
         param(request, "labels").map(_.split(",").toSet).getOrElse(Set.empty),
-        param(request, "milestone").map{
+        param(request, "milestone").map {
           case "none" => None
           case x      => x.toIntOpt
         },
-        param(request, "for"),
+        param(request, "author"),
+        param(request, "assigned"),
+        param(request, "mentioned"),
         param(request, "state",     Seq("open", "closed")).getOrElse("open"),
         param(request, "sort",      Seq("created", "comments", "updated")).getOrElse("created"),
-        param(request, "direction", Seq("asc", "desc")).getOrElse("desc"))
+        param(request, "direction", Seq("asc", "desc")).getOrElse("desc"),
+        param(request, "visibility"),
+        param(request, "groups").map(_.split(",").toSet).getOrElse(Set.empty)
+      )
 
     def page(request: HttpServletRequest) = try {
       val i = param(request, "page").getOrElse("1").toInt
@@ -383,4 +457,6 @@ object IssuesService {
     }
   }
 
+  case class IssueInfo(issue: Issue, labels: List[Label], milestone: Option[String], commentCount: Int)
+
 }

src/main/scala/service/LabelsService.scala

@@ -12,8 +12,8 @@ trait LabelsService {
   def getLabel(owner: String, repository: String, labelId: Int)(implicit s: Session): Option[Label] =
     Labels.filter(_.byPrimaryKey(owner, repository, labelId)).firstOption
 
-  def createLabel(owner: String, repository: String, labelName: String, color: String)(implicit s: Session): Unit =
-    Labels insert Label(
+  def createLabel(owner: String, repository: String, labelName: String, color: String)(implicit s: Session): Int =
+    Labels returning Labels.map(_.labelId) += Label(
       userName       = owner,
       repositoryName = repository,
       labelName      = labelName,

src/main/scala/service/PluginService.scala

@@ -0,0 +1,24 @@
+package service
+
+import model.Profile._
+import profile.simple._
+import model.Plugin
+
+trait PluginService {
+
+  def getPlugins()(implicit s: Session): List[Plugin] =
+    Plugins.sortBy(_.pluginId).list
+
+  def registerPlugin(plugin: Plugin)(implicit s: Session): Unit =
+    Plugins.insert(plugin)
+
+  def updatePlugin(plugin: Plugin)(implicit s: Session): Unit =
+    Plugins.filter(_.pluginId === plugin.pluginId.bind).map(_.version).update(plugin.version)
+
+  def deletePlugin(pluginId: String)(implicit s: Session): Unit =
+    Plugins.filter(_.pluginId === pluginId.bind).delete
+
+  def getPlugin(pluginId: String)(implicit s: Session): Option[Plugin] =
+    Plugins.filter(_.pluginId === pluginId.bind).firstOption
+
+}

src/main/scala/service/PullRequestService.scala

@@ -3,6 +3,7 @@ package service
 import model.Profile._
 import profile.simple._
 import model.{PullRequest, Issue}
+import util.JGitUtil
 
 trait PullRequestService { self: IssuesService =>
   import PullRequestService._
@@ -36,6 +37,24 @@ trait PullRequestService { self: IssuesService =>
       .list
       .map { x => PullRequestCount(x._1, x._2) }
 
+//  def getAllPullRequestCountGroupByUser(closed: Boolean, userName: String)(implicit s: Session): List[PullRequestCount] =
+//    PullRequests
+//      .innerJoin(Issues).on { (t1, t2) => t1.byPrimaryKey(t2.userName, t2.repositoryName, t2.issueId) }
+//      .innerJoin(Repositories).on { case ((t1, t2), t3) => t2.byRepository(t3.userName, t3.repositoryName) }
+//      .filter { case ((t1, t2), t3) =>
+//        (t2.closed === closed.bind) &&
+//          (
+//            (t3.isPrivate === false.bind) ||
+//            (t3.userName  === userName.bind) ||
+//            (Collaborators.filter { t4 => t4.byRepository(t3.userName, t3.repositoryName) && (t4.collaboratorName === userName.bind)} exists)
+//          )
+//      }
+//      .groupBy { case ((t1, t2), t3) => t2.openedUserName }
+//      .map { case (userName, t) => userName -> t.length }
+//      .sortBy(_._2 desc)
+//      .list
+//      .map { x => PullRequestCount(x._1, x._2) }
+
   def createPullRequest(originUserName: String, originRepositoryName: String, issueId: Int,
         originBranch: String, requestUserName: String, requestRepositoryName: String, requestBranch: String,
         commitIdFrom: String, commitIdTo: String)(implicit s: Session): Unit =
@@ -63,6 +82,18 @@ trait PullRequestService { self: IssuesService =>
       .map { case (t1, t2) => t1 }
       .list
 
+  /**
+   * Fetch pull request contents into refs/pull/${issueId}/head and update pull request table.
+   */
+  def updatePullRequests(owner: String, repository: String, branch: String)(implicit s: Session): Unit =
+    getPullRequestsByRequest(owner, repository, branch, false).foreach { pullreq =>
+      if(Repositories.filter(_.byRepository(pullreq.userName, pullreq.repositoryName)).exists.run){
+        val (commitIdTo, commitIdFrom) = JGitUtil.updatePullRequest(
+          pullreq.userName, pullreq.repositoryName, pullreq.branch, pullreq.issueId,
+          pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.requestBranch)
+        updateCommitId(pullreq.userName, pullreq.repositoryName, pullreq.issueId, commitIdTo, commitIdFrom)
+      }
+    }
 }
 
 object PullRequestService {

src/main/scala/service/RepositorySearchService.scala

@@ -20,6 +20,7 @@ trait RepositorySearchService { self: IssuesService =>
     searchIssuesByKeyword(owner, repository, query).map { case (issue, commentCount, content) =>
       IssueSearchResult(
         issue.issueId,
+        issue.isPullRequest,
         issue.title,
         issue.openedUserName,
         issue.registeredDate,
@@ -111,6 +112,7 @@ object RepositorySearchService {
 
   case class IssueSearchResult(
     issueId: Int,
+    isPullRequest: Boolean,
     title: String,
     openedUserName: String,
     registeredDate: java.util.Date,

src/main/scala/service/RepositoryService.scala

@@ -2,7 +2,7 @@ package service
 
 import model.Profile._
 import profile.simple._
-import model.{Repository, Account, Collaborator}
+import model.{Repository, Account, Collaborator, Label}
 import util.JGitUtil
 
 trait RepositoryService { self: AccountService =>
@@ -52,10 +52,10 @@ trait RepositoryService { self: AccountService =>
         val issues         = Issues        .filter(_.byRepository(oldUserName, oldRepositoryName)).list
         val pullRequests   = PullRequests  .filter(_.byRepository(oldUserName, oldRepositoryName)).list
         val labels         = Labels        .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-        val issueComments = IssueComments.filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val issueComments  = IssueComments .filter(_.byRepository(oldUserName, oldRepositoryName)).list
         val issueLabels    = IssueLabels   .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-        val activities    = Activities   .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-        val collaborators = Collaborators.filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val commitComments = CommitComments.filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val collaborators  = Collaborators .filter(_.byRepository(oldUserName, oldRepositoryName)).list
 
         Repositories.filter { t =>
           (t.originUserName === oldUserName.bind) && (t.originRepositoryName === oldRepositoryName.bind)
@@ -69,10 +69,17 @@ trait RepositoryService { self: AccountService =>
           t.requestRepositoryName === oldRepositoryName.bind
         }.map { t => t.requestUserName -> t.requestRepositoryName }.update(newUserName, newRepositoryName)
 
+        // Updates activity fk before deleting repository because activity is sorted by activityId
+        // and it can't be changed by deleting-and-inserting record.
+        Activities.filter(_.byRepository(oldUserName, oldRepositoryName)).list.foreach { activity =>
+          Activities.filter(_.activityId === activity.activityId.bind)
+            .map(x => (x.userName, x.repositoryName)).update(newUserName, newRepositoryName)
+        }
+
         deleteRepository(oldUserName, oldRepositoryName)
 
         WebHooks  .insertAll(webHooks      .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-        Milestones    .insertAll(milestones    .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+        Milestones.insertAll(milestones    .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         IssueId   .insertAll(issueId       .map(_.copy(_1       = newUserName, _2             = newRepositoryName)) :_*)
 
         val newMilestones = Milestones.filter(_.byRepository(newUserName, newRepositoryName)).list
@@ -87,8 +94,17 @@ trait RepositoryService { self: AccountService =>
         PullRequests  .insertAll(pullRequests  .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         IssueComments .insertAll(issueComments .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         Labels        .insertAll(labels        .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-        IssueLabels   .insertAll(issueLabels   .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-        Activities    .insertAll(activities    .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+        CommitComments.insertAll(commitComments.map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+
+        // Convert labelId
+        val oldLabelMap = labels.map(x => (x.labelId, x.labelName)).toMap
+        val newLabelMap = Labels.filter(_.byRepository(newUserName, newRepositoryName)).map(x => (x.labelName, x.labelId)).list.toMap
+        IssueLabels.insertAll(issueLabels.map(x => x.copy(
+          labelId        = newLabelMap(oldLabelMap(x.labelId)),
+          userName       = newUserName,
+          repositoryName = newRepositoryName
+        )) :_*)
+
         if(account.isGroupAccount){
           Collaborators.insertAll(getGroupMembers(newUserName).map(m => Collaborator(newUserName, newRepositoryName, m.userName)) :_*)
         } else {
@@ -96,12 +112,11 @@ trait RepositoryService { self: AccountService =>
         }
 
         // Update activity messages
-        val updateActivities = Activities.filter { t =>
+        Activities.filter { t =>
           (t.message like s"%:${oldUserName}/${oldRepositoryName}]%") ||
-          (t.message like s"%:${oldUserName}/${oldRepositoryName}#%")
-        }.map { t => t.activityId -> t.message }.list
-
-        updateActivities.foreach { case (activityId, message) =>
+          (t.message like s"%:${oldUserName}/${oldRepositoryName}#%") ||
+          (t.message like s"%:${oldUserName}/${oldRepositoryName}@%")
+        }.map { t => t.activityId -> t.message }.list.foreach { case (activityId, message) =>
           Activities.filter(_.activityId === activityId.bind).map(_.message).update(
             message
               .replace(s"[repo:${oldUserName}/${oldRepositoryName}]"   ,s"[repo:${newUserName}/${newRepositoryName}]")
@@ -109,6 +124,7 @@ trait RepositoryService { self: AccountService =>
               .replace(s"[tag:${oldUserName}/${oldRepositoryName}#"    ,s"[tag:${newUserName}/${newRepositoryName}#")
               .replace(s"[pullreq:${oldUserName}/${oldRepositoryName}#",s"[pullreq:${newUserName}/${newRepositoryName}#")
               .replace(s"[issue:${oldUserName}/${oldRepositoryName}#"  ,s"[issue:${newUserName}/${newRepositoryName}#")
+              .replace(s"[commit:${oldUserName}/${oldRepositoryName}@" ,s"[commit:${newUserName}/${newRepositoryName}@")
           )
         }
       }
@@ -118,6 +134,7 @@ trait RepositoryService { self: AccountService =>
   def deleteRepository(userName: String, repositoryName: String)(implicit s: Session): Unit = {
     Activities    .filter(_.byRepository(userName, repositoryName)).delete
     Collaborators .filter(_.byRepository(userName, repositoryName)).delete
+    CommitComments.filter(_.byRepository(userName, repositoryName)).delete
     IssueLabels   .filter(_.byRepository(userName, repositoryName)).delete
     Labels        .filter(_.byRepository(userName, repositoryName)).delete
     IssueComments .filter(_.byRepository(userName, repositoryName)).delete
@@ -127,6 +144,30 @@ trait RepositoryService { self: AccountService =>
     Milestones    .filter(_.byRepository(userName, repositoryName)).delete
     WebHooks      .filter(_.byRepository(userName, repositoryName)).delete
     Repositories  .filter(_.byRepository(userName, repositoryName)).delete
+
+    // Update ORIGIN_USER_NAME and ORIGIN_REPOSITORY_NAME
+    Repositories
+      .filter { x => (x.originUserName === userName.bind) && (x.originRepositoryName === repositoryName.bind) }
+      .map    { x => (x.userName, x.repositoryName) }
+      .list
+      .foreach { case (userName, repositoryName) =>
+        Repositories
+          .filter(_.byRepository(userName, repositoryName))
+          .map(x => (x.originUserName?, x.originRepositoryName?))
+          .update(None, None)
+      }
+
+    // Update PARENT_USER_NAME and PARENT_REPOSITORY_NAME
+    Repositories
+      .filter { x => (x.parentUserName === userName.bind) && (x.parentRepositoryName === repositoryName.bind) }
+      .map    { x => (x.userName, x.repositoryName) }
+      .list
+      .foreach { case (userName, repositoryName) =>
+        Repositories
+          .filter(_.byRepository(userName, repositoryName))
+          .map(x => (x.parentUserName?, x.parentRepositoryName?))
+          .update(None, None)
+      }
   }
 
   /**
@@ -156,8 +197,8 @@ trait RepositoryService { self: AccountService =>
       new RepositoryInfo(
         JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl),
         repository,
-        issues.size,
-        issues.filter(_ == true).size,
+        issues.count(_ == false),
+        issues.count(_ == true),
         getForkedCount(
           repository.originUserName.getOrElse(repository.userName),
           repository.originRepositoryName.getOrElse(repository.repositoryName)
@@ -166,8 +207,19 @@ trait RepositoryService { self: AccountService =>
     }
   }
 
-  def getAllRepositories()(implicit s: Session): List[(String, String)] = {
-    Repositories.sortBy(_.lastActivityDate desc).map{ t =>
+  /**
+   * Returns the repositories without private repository that user does not have access right.
+   * Include public repository, private own repository and private but collaborator repository.
+   *
+   * @param userName the user name of collaborator
+   * @return the repository infomation list
+   */
+  def getAllRepositories(userName: String)(implicit s: Session): List[(String, String)] = {
+    Repositories.filter { t1 =>
+      (t1.isPrivate === false.bind) ||
+      (t1.userName  === userName.bind) ||
+      (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) && (t2.collaboratorName === userName.bind)} exists)
+    }.sortBy(_.lastActivityDate desc).map{ t =>
       (t.userName, t.repositoryName)
     }.list
   }

src/main/scala/service/SystemSettingsService.scala

@@ -12,7 +12,10 @@ trait SystemSettingsService {
   def saveSystemSettings(settings: SystemSettings): Unit = {
     defining(new java.util.Properties()){ props =>
       settings.baseUrl.foreach(x => props.setProperty(BaseURL, x.replaceFirst("/\\Z", "")))
+      settings.information.foreach(x => props.setProperty(Information, x))
       props.setProperty(AllowAccountRegistration, settings.allowAccountRegistration.toString)
+      props.setProperty(AllowAnonymousAccess, settings.allowAnonymousAccess.toString)
+      props.setProperty(IsCreateRepoOptionPublic, settings.isCreateRepoOptionPublic.toString)
       props.setProperty(Gravatar, settings.gravatar.toString)
       props.setProperty(Notification, settings.notification.toString)
       props.setProperty(Ssh, settings.ssh.toString)
@@ -39,8 +42,9 @@ trait SystemSettingsService {
           props.setProperty(LdapUserNameAttribute, ldap.userNameAttribute)
           ldap.additionalFilterCondition.foreach(x => props.setProperty(LdapAdditionalFilterCondition, x))
           ldap.fullNameAttribute.foreach(x => props.setProperty(LdapFullNameAttribute, x))
-          ldap.mailAttribute.foreach(x => props.setProperty(LdapMailAddressAttribute, x.toString))
+          ldap.mailAttribute.foreach(x => props.setProperty(LdapMailAddressAttribute, x))
           ldap.tls.foreach(x => props.setProperty(LdapTls, x.toString))
+          ldap.ssl.foreach(x => props.setProperty(LdapSsl, x.toString))
           ldap.keystore.foreach(x => props.setProperty(LdapKeystore, x))
         }
       }
@@ -60,7 +64,10 @@ trait SystemSettingsService {
       }
       SystemSettings(
         getOptionValue[String](props, BaseURL, None).map(x => x.replaceFirst("/\\Z", "")),
+        getOptionValue[String](props, Information, None),
         getValue(props, AllowAccountRegistration, false),
+        getValue(props, AllowAnonymousAccess, true),
+        getValue(props, IsCreateRepoOptionPublic, true),
         getValue(props, Gravatar, true),
         getValue(props, Notification, false),
         getValue(props, Ssh, false),
@@ -90,6 +97,7 @@ trait SystemSettingsService {
             getOptionValue(props, LdapFullNameAttribute, None),
             getOptionValue(props, LdapMailAddressAttribute, None),
             getOptionValue[Boolean](props, LdapTls, None),
+            getOptionValue[Boolean](props, LdapSsl, None),
             getOptionValue(props, LdapKeystore, None)))
         } else {
           None
@@ -105,7 +113,10 @@ object SystemSettingsService {
 
   case class SystemSettings(
     baseUrl: Option[String],
+    information: Option[String],
     allowAccountRegistration: Boolean,
+    allowAnonymousAccess: Boolean,
+    isCreateRepoOptionPublic: Boolean,
     gravatar: Boolean,
     notification: Boolean,
     ssh: Boolean,
@@ -131,6 +142,7 @@ object SystemSettingsService {
     fullNameAttribute: Option[String],
     mailAttribute: Option[String],
     tls: Option[Boolean],
+    ssl: Option[Boolean],
     keystore: Option[String])
 
   case class Smtp(
@@ -147,7 +159,10 @@ object SystemSettingsService {
   val DefaultLdapPort = 389
 
   private val BaseURL = "base_url"
+  private val Information = "information"
   private val AllowAccountRegistration = "allow_account_registration"
+  private val AllowAnonymousAccess = "allow_anonymous_access"
+  private val IsCreateRepoOptionPublic = "is_create_repository_option_public"
   private val Gravatar = "gravatar"
   private val Notification = "notification"
   private val Ssh = "ssh"
@@ -170,6 +185,7 @@ object SystemSettingsService {
   private val LdapFullNameAttribute = "ldap.fullname_attribute"
   private val LdapMailAddressAttribute = "ldap.mail_attribute"
   private val LdapTls = "ldap.tls"
+  private val LdapSsl = "ldap.ssl"
   private val LdapKeystore = "ldap.keystore"
 
   private def getValue[A: ClassTag](props: java.util.Properties, key: String, default: A): A =
@@ -191,4 +207,7 @@ object SystemSettingsService {
       else value
     }
 
+//  // TODO temporary flag
+//  val enablePluginSystem = Option(System.getProperty("enable.plugin")).getOrElse("false").toBoolean
+
 }

src/main/scala/service/WikiService.scala

@@ -182,7 +182,8 @@ trait WikiService {
             }
             builder.finish()
 
-            JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter), committer.fullName, committer.mailAddress,
+            JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+              Constants.HEAD, committer.fullName, committer.mailAddress,
               pageName match {
                 case Some(x) => s"Revert ${from} ... ${to} on ${x}"
                 case None    => s"Revert ${from} ... ${to}"
@@ -229,7 +230,8 @@ trait WikiService {
         if(created || updated || removed){
           builder.add(JGitUtil.createDirCacheEntry(newPageName + ".md", FileMode.REGULAR_FILE, inserter.insert(Constants.OBJ_BLOB, content.getBytes("UTF-8"))))
           builder.finish()
-          val newHeadId = JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter), committer.fullName, committer.mailAddress,
+          val newHeadId = JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+            Constants.HEAD, committer.fullName, committer.mailAddress,
             if(message.trim.length == 0) {
               if(removed){
                 s"Rename ${currentPageName} to ${newPageName}"
@@ -269,7 +271,8 @@ trait WikiService {
         }
         if(removed){
           builder.finish()
-          JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter), committer, mailAddress, message)
+          JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+            Constants.HEAD, committer, mailAddress, message)
         }
       }
     }

src/main/scala/servlet/AutoUpdateListener.scala

@@ -8,9 +8,9 @@ import org.apache.commons.io.IOUtils
 import org.slf4j.LoggerFactory
 import util.Directory._
 import util.ControlUtil._
+import util.JDBCUtil._
 import org.eclipse.jgit.api.Git
 import util.Directory
-import plugin.PluginUpdateJob
 
 object AutoUpdate {
   
@@ -52,6 +52,60 @@ object AutoUpdate {
    * The history of versions. A head of this sequence is the current BitBucket version.
    */
   val versions = Seq(
+    new Version(2, 8),
+    new Version(2, 7) {
+      override def update(conn: Connection): Unit = {
+        super.update(conn)
+        conn.select("SELECT * FROM REPOSITORY"){ rs =>
+          // Rename attached files directory from /issues to /comments
+          val userName = rs.getString("USER_NAME")
+          val repoName = rs.getString("REPOSITORY_NAME")
+          defining(Directory.getAttachedDir(userName, repoName)){ newDir =>
+            val oldDir = new File(newDir.getParentFile, "issues")
+            if(oldDir.exists && oldDir.isDirectory){
+              oldDir.renameTo(newDir)
+            }
+          }
+          // Update ORIGIN_USER_NAME and ORIGIN_REPOSITORY_NAME if it does not exist
+          val originalUserName = rs.getString("ORIGIN_USER_NAME")
+          val originalRepoName = rs.getString("ORIGIN_REPOSITORY_NAME")
+          if(originalUserName != null && originalRepoName != null){
+            if(conn.selectInt("SELECT COUNT(*) FROM REPOSITORY WHERE USER_NAME = ? AND REPOSITORY_NAME = ?",
+                originalUserName, originalRepoName) == 0){
+              conn.update("UPDATE REPOSITORY SET ORIGIN_USER_NAME = NULL, ORIGIN_REPOSITORY_NAME = NULL " +
+                  "WHERE USER_NAME = ? AND REPOSITORY_NAME = ?", userName, repoName)
+            }
+          }
+          // Update PARENT_USER_NAME and PARENT_REPOSITORY_NAME if it does not exist
+          val parentUserName = rs.getString("PARENT_USER_NAME")
+          val parentRepoName = rs.getString("PARENT_REPOSITORY_NAME")
+          if(parentUserName != null && parentRepoName != null){
+            if(conn.selectInt("SELECT COUNT(*) FROM REPOSITORY WHERE USER_NAME = ? AND REPOSITORY_NAME = ?",
+                parentUserName, parentRepoName) == 0){
+              conn.update("UPDATE REPOSITORY SET PARENT_USER_NAME = NULL, PARENT_REPOSITORY_NAME = NULL " +
+                  "WHERE USER_NAME = ? AND REPOSITORY_NAME = ?", userName, repoName)
+            }
+          }
+        }
+      }
+    },
+    new Version(2, 6),
+    new Version(2, 5),
+    new Version(2, 4),
+    new Version(2, 3) {
+      override def update(conn: Connection): Unit = {
+        super.update(conn)
+        conn.select("SELECT ACTIVITY_ID, ADDITIONAL_INFO FROM ACTIVITY WHERE ACTIVITY_TYPE='push'"){ rs =>
+          val curInfo = rs.getString("ADDITIONAL_INFO")
+          val newInfo = curInfo.split("\n").filter(_ matches "^[0-9a-z]{40}:.*").mkString("\n")
+          if (curInfo != newInfo) {
+            conn.update("UPDATE ACTIVITY SET ADDITIONAL_INFO = ? WHERE ACTIVITY_ID = ?", newInfo, rs.getInt("ACTIVITY_ID"))
+          }
+        }
+        FileUtils.deleteDirectory(Directory.getPluginCacheDir())
+        FileUtils.deleteDirectory(new File(Directory.PluginHome))
+      }
+    },
     new Version(2, 2),
     new Version(2, 1),
     new Version(2, 0){
@@ -62,8 +116,7 @@ object AutoUpdate {
         mimeUtil.registerMimeDetector("eu.medsea.mimeutil.detector.MagicMimeMimeDetector")
 
         super.update(conn)
-        using(conn.createStatement.executeQuery("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY")){ rs =>
-          while(rs.next){
+        conn.select("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY"){ rs =>
           defining(Directory.getAttachedDir(rs.getString("USER_NAME"), rs.getString("REPOSITORY_NAME"))){ dir =>
             if(dir.exists && dir.isDirectory){
               dir.listFiles.foreach { file =>
@@ -78,7 +131,6 @@ object AutoUpdate {
           }
         }
       }
-      }
     },
     Version(1, 13),
     Version(1, 12),
@@ -94,8 +146,7 @@ object AutoUpdate {
       override def update(conn: Connection): Unit = {
         super.update(conn)
         // Fix wiki repository configuration
-        using(conn.createStatement.executeQuery("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY")){ rs =>
-          while(rs.next){
+        conn.select("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY"){ rs =>
           using(Git.open(getWikiRepositoryDir(rs.getString("USER_NAME"), rs.getString("REPOSITORY_NAME")))){ git =>
             defining(git.getRepository.getConfig){ config =>
               if(!config.getBoolean("http", "receivepack", false)){
@@ -106,7 +157,6 @@ object AutoUpdate {
           }
         }
       }
-      }
     },
     Version(1, 2),
     Version(1, 1),
@@ -146,25 +196,23 @@ object AutoUpdate {
  * Update database schema automatically in the context initializing.
  */
 class AutoUpdateListener extends ServletContextListener {
-  import org.quartz.impl.StdSchedulerFactory
-  import org.quartz.JobBuilder._
-  import org.quartz.TriggerBuilder._
-  import org.quartz.SimpleScheduleBuilder._
   import AutoUpdate._
 
   private val logger = LoggerFactory.getLogger(classOf[AutoUpdateListener])
-  private val scheduler = StdSchedulerFactory.getDefaultScheduler
+//  private val scheduler = StdSchedulerFactory.getDefaultScheduler
   
   override def contextInitialized(event: ServletContextEvent): Unit = {
-    val datadir = event.getServletContext.getInitParameter("gitbucket.home")
-    if(datadir != null){
-      System.setProperty("gitbucket.home", datadir)
+    val dataDir = event.getServletContext.getInitParameter("gitbucket.home")
+    if(dataDir != null){
+      System.setProperty("gitbucket.home", dataDir)
     }
     org.h2.Driver.load()
-    event.getServletContext.setInitParameter("db.url", s"jdbc:h2:${DatabaseHome};MVCC=true")
 
-    logger.debug("Start schema update")
+    val context = event.getServletContext
+    context.setInitParameter("db.url", s"jdbc:h2:${DatabaseHome};MVCC=true")
+
     defining(getConnection(event.getServletContext)){ conn =>
+      logger.debug("Start schema update")
       try {
         defining(getCurrentVersion()){ currentVersion =>
           if(currentVersion == headVersion){
@@ -174,7 +222,6 @@ class AutoUpdateListener extends ServletContextListener {
           } else {
             versions.takeWhile(_ != currentVersion).reverse.foreach(_.update(conn))
             FileUtils.writeStringToFile(versionFile, headVersion.versionString, "UTF-8")
-            conn.commit()
             logger.debug(s"Updated from ${currentVersion.versionString} to ${headVersion.versionString}")
           }
         }
@@ -185,21 +232,11 @@ class AutoUpdateListener extends ServletContextListener {
           conn.rollback()
         }
       }
-    }
       logger.debug("End schema update")
-
-    logger.debug("Starting plugin system...")
-    plugin.PluginSystem.init()
-
-    scheduler.start()
-    PluginUpdateJob.schedule(scheduler)
-    logger.debug("PluginUpdateJob is started.")
-
-    logger.debug("Plugin system is initialized.")
+    }
   }
 
   def contextDestroyed(sce: ServletContextEvent): Unit = {
-    scheduler.shutdown()
   }
 
   private def getConnection(servletContext: ServletContext): Connection =
@@ -208,4 +245,10 @@ class AutoUpdateListener extends ServletContextListener {
       servletContext.getInitParameter("db.user"),
       servletContext.getInitParameter("db.password"))
 
+  private def getDatabase(servletContext: ServletContext): scala.slick.jdbc.JdbcBackend.Database =
+    slick.jdbc.JdbcBackend.Database.forURL(
+      servletContext.getInitParameter("db.url"),
+      servletContext.getInitParameter("db.user"),
+      servletContext.getInitParameter("db.password"))
+
 }

src/main/scala/servlet/BasicAuthenticationFilter.scala

@@ -28,24 +28,32 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
       override def setCharacterEncoding(encoding: String) = {}
     }
 
+    val isUpdating = request.getRequestURI.endsWith("/git-receive-pack") || "service=git-receive-pack".equals(request.getQueryString)
+
+    val settings = loadSystemSettings()
+
     try {
-      defining(request.paths){ case Array(_, repositoryOwner, repositoryName, _*) =>
+      defining(request.paths){
+        case Array(_, repositoryOwner, repositoryName, _*) =>
           getRepository(repositoryOwner, repositoryName.replaceFirst("\\.wiki\\.git$|\\.git$", ""), "") match {
             case Some(repository) => {
-            if(!request.getRequestURI.endsWith("/git-receive-pack") &&
-              !"service=git-receive-pack".equals(request.getQueryString) && !repository.repository.isPrivate){
+              if(!isUpdating && !repository.repository.isPrivate && settings.allowAnonymousAccess){
                 chain.doFilter(req, wrappedResponse)
               } else {
                 request.getHeader("Authorization") match {
                   case null => requireAuth(response)
                   case auth => decodeAuthHeader(auth).split(":") match {
-                  case Array(username, password) => getWritableUser(username, password, repository) match {
+                    case Array(username, password) => {
+                      authenticate(settings, username, password) match {
                         case Some(account) => {
+                          if(isUpdating && hasWritePermission(repository.owner, repository.name, Some(account))){
                             request.setAttribute(Keys.Request.UserName, account.userName)
+                          }
                           chain.doFilter(req, wrappedResponse)
                         }
                         case None => requireAuth(response)
                       }
+                    }
                     case _ => requireAuth(response)
                   }
                 }
@@ -56,6 +64,10 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
               response.sendError(HttpServletResponse.SC_NOT_FOUND)
             }
           }
+        case _ => {
+          logger.debug(s"Not enough path arguments: ${request.paths}")
+          response.sendError(HttpServletResponse.SC_NOT_FOUND)
+        }
       }
     } catch {
       case ex: Exception => {
@@ -65,13 +77,6 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
     }
   }
 
-  private def getWritableUser(username: String, password: String, repository: RepositoryService.RepositoryInfo)
-                             (implicit session: Session): Option[Account] =
-    authenticate(loadSystemSettings(), username, password) match {
-      case x @ Some(account) if(hasWritePermission(repository.owner, repository.name, x)) => x
-      case _ => None
-    }
-
   private def requireAuth(response: HttpServletResponse): Unit = {
     response.setHeader("WWW-Authenticate", "BASIC realm=\"GitBucket\"")
     response.sendError(HttpServletResponse.SC_UNAUTHORIZED)

src/main/scala/servlet/GitRepositoryServlet.scala

@@ -134,8 +134,8 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
 
           // Retrieve all issue count in the repository
           val issueCount =
-            countIssue(IssueSearchCondition(state = "open"), Map.empty, false, owner -> repository) +
-            countIssue(IssueSearchCondition(state = "closed"), Map.empty, false, owner -> repository)
+            countIssue(IssueSearchCondition(state = "open"), false, owner -> repository) +
+            countIssue(IssueSearchCondition(state = "closed"), false, owner -> repository)
 
           // Extract new commit and apply issue comment
           val defaultBranch = getRepository(owner, repository, baseUrl).get.repository.defaultBranch
@@ -174,7 +174,7 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
               case ReceiveCommand.Type.CREATE |
                    ReceiveCommand.Type.UPDATE |
                    ReceiveCommand.Type.UPDATE_NONFASTFORWARD =>
-                updatePullRequests(branchName)
+                updatePullRequests(owner, repository, branchName)
               case _ =>
             }
           }
@@ -211,26 +211,4 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
       }
     }
   }
-
-  /**
-   * Fetch pull request contents into refs/pull/${issueId}/head and update pull request table.
-   */
-  private def updatePullRequests(branch: String) =
-    getPullRequestsByRequest(owner, repository, branch, false).foreach { pullreq =>
-      if(getRepository(pullreq.userName, pullreq.repositoryName, baseUrl).isDefined){
-        using(Git.open(Directory.getRepositoryDir(pullreq.userName, pullreq.repositoryName)),
-              Git.open(Directory.getRepositoryDir(pullreq.requestUserName, pullreq.requestRepositoryName))){ (oldGit, newGit) =>
-          oldGit.fetch
-            .setRemote(Directory.getRepositoryDir(owner, repository).toURI.toString)
-            .setRefSpecs(new RefSpec(s"refs/heads/${branch}:refs/pull/${pullreq.issueId}/head").setForceUpdate(true))
-            .call
-
-          val commitIdTo = oldGit.getRepository.resolve(s"refs/pull/${pullreq.issueId}/head").getName
-          val commitIdFrom = JGitUtil.getForkedCommitId(oldGit, newGit,
-            pullreq.userName, pullreq.repositoryName, pullreq.branch,
-            pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.requestBranch)
-          updateCommitId(pullreq.userName, pullreq.repositoryName, pullreq.issueId, commitIdTo, commitIdFrom)
-        }
-      }
-    }
 }

src/main/scala/servlet/PluginActionInvokeFilter.scala

@@ -1,104 +0,0 @@
-package servlet
-
-import javax.servlet._
-import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
-import org.apache.commons.io.IOUtils
-import twirl.api.Html
-import service.{AccountService, RepositoryService, SystemSettingsService}
-import model.{Account, Session}
-import util.{JGitUtil, Keys}
-import plugin.PluginConnectionHolder
-import service.RepositoryService.RepositoryInfo
-import service.SystemSettingsService.SystemSettings
-
-class PluginActionInvokeFilter extends Filter with SystemSettingsService with RepositoryService with AccountService {
-
-  def init(config: FilterConfig) = {}
-
-  def destroy(): Unit = {}
-
-  def doFilter(req: ServletRequest, res: ServletResponse, chain: FilterChain): Unit = {
-    (req, res) match {
-      case (request: HttpServletRequest, response: HttpServletResponse) => {
-        Database(req.getServletContext) withTransaction { implicit session =>
-          val path = req.asInstanceOf[HttpServletRequest].getRequestURI
-          if(!processGlobalAction(path, request, response) && !processRepositoryAction(path, request, response)){
-            chain.doFilter(req, res)
-          }
-        }
-      }
-    }
-  }
-
-  private def processGlobalAction(path: String, request: HttpServletRequest, response: HttpServletResponse): Boolean = {
-    plugin.PluginSystem.globalActions.find(_.path == path).map { action =>
-      val result = action.function(request, response)
-      val systemSettings = loadSystemSettings()
-      result match {
-        case x: String => renderGlobalHtml(request, response, systemSettings, x)
-        case x: org.mozilla.javascript.NativeObject => {
-          x.get("format") match {
-            case "html" => renderGlobalHtml(request, response, systemSettings, x.get("body").toString)
-            case "json" => renderJson(request, response, x.get("body").toString)
-          }
-        }
-      }
-      true
-    } getOrElse false
-  }
-
-  private def processRepositoryAction(path: String, request: HttpServletRequest, response: HttpServletResponse)
-                                     (implicit session: Session): Boolean = {
-    val elements = path.split("/")
-    if(elements.length > 3){
-      val owner  = elements(1)
-      val name   = elements(2)
-      val remain = elements.drop(3).mkString("/", "/", "")
-      val systemSettings = loadSystemSettings()
-      getRepository(owner, name, systemSettings.baseUrl(request)).flatMap { repository =>
-        plugin.PluginSystem.repositoryActions.find(_.path == remain).map { action =>
-          val result = try {
-            PluginConnectionHolder.threadLocal.set(session.conn)
-            action.function(request, response, repository)
-          } finally {
-            PluginConnectionHolder.threadLocal.remove()
-          }
-          result match {
-            case x: String => renderRepositoryHtml(request, response, systemSettings, repository, x)
-            case x: org.mozilla.javascript.NativeObject => {
-              x.get("format") match {
-                case "html" => renderRepositoryHtml(request, response, systemSettings, repository, x.get("body").toString)
-                case "json" => renderJson(request, response, x.get("body").toString)
-              }
-            }
-          }
-          true
-        }
-      } getOrElse false
-    } else false
-  }
-
-  private def renderGlobalHtml(request: HttpServletRequest, response: HttpServletResponse,
-                               systemSettings: SystemSettings, body: String): Unit = {
-    response.setContentType("text/html; charset=UTF-8")
-    val loginAccount = request.getSession.getAttribute(Keys.Session.LoginAccount).asInstanceOf[Account]
-    implicit val context = app.Context(systemSettings, Option(loginAccount), request)
-    val html = _root_.html.main("GitBucket", None)(Html(body))
-    IOUtils.write(html.toString.getBytes("UTF-8"), response.getOutputStream)
-  }
-
-  private def renderRepositoryHtml(request: HttpServletRequest, response: HttpServletResponse,
-                                   systemSettings: SystemSettings, repository: RepositoryInfo, body: String): Unit = {
-    response.setContentType("text/html; charset=UTF-8")
-    val loginAccount = request.getSession.getAttribute(Keys.Session.LoginAccount).asInstanceOf[Account]
-    implicit val context = app.Context(systemSettings, Option(loginAccount), request)
-    val html = _root_.html.main("GitBucket", None)(_root_.html.menu("", repository)(Html(body))) // TODO specify active side menu
-    IOUtils.write(html.toString.getBytes("UTF-8"), response.getOutputStream)
-  }
-
-  private def renderJson(request: HttpServletRequest, response: HttpServletResponse, body: String): Unit = {
-    response.setContentType("application/json; charset=UTF-8")
-    IOUtils.write(body.getBytes("UTF-8"), response.getOutputStream)
-  }
-
-}

src/main/scala/util/Directory.scala

@@ -48,7 +48,7 @@ object Directory {
    * Directory for files which are attached to issue.
    */
   def getAttachedDir(owner: String, repository: String): File =
-    new File(s"${RepositoryHome}/${owner}/${repository}/issues")
+    new File(s"${RepositoryHome}/${owner}/${repository}/comments")
 
   /**
    * Directory for uploaded files by the specified user.

src/main/scala/util/JDBCUtil.scala

@@ -0,0 +1,55 @@
+package util
+
+import java.sql._
+import util.ControlUtil._
+import scala.collection.mutable.ListBuffer
+
+/**
+ * Provides implicit class which extends java.sql.Connection.
+ * This is used in automatic migration in [[servlet.AutoUpdateListener]].
+ */
+object JDBCUtil {
+
+  implicit class RichConnection(conn: Connection){
+
+    def update(sql: String, params: Any*): Int = {
+      execute(sql, params: _*){ stmt =>
+        stmt.executeUpdate()
+      }
+    }
+
+    def select[T](sql: String, params: Any*)(f: ResultSet => T): Seq[T] = {
+      execute(sql, params: _*){ stmt =>
+        using(stmt.executeQuery()){ rs =>
+          val list = new ListBuffer[T]
+          while(rs.next){
+            list += f(rs)
+          }
+          list.toSeq
+        }
+      }
+    }
+
+    def selectInt(sql: String, params: Any*): Int = {
+      execute(sql, params: _*){ stmt =>
+        using(stmt.executeQuery()){ rs =>
+          if(rs.next) rs.getInt(1) else 0
+        }
+      }
+    }
+
+    private def execute[T](sql: String, params: Any*)(f: (PreparedStatement) => T): T = {
+      using(conn.prepareStatement(sql)){ stmt =>
+        params.zipWithIndex.foreach { case (p, i) =>
+          p match {
+            case x: Int    => stmt.setInt(i + 1, x)
+            case x: String => stmt.setString(i + 1, x)
+          }
+        }
+        f(stmt)
+      }
+    }
+
+  }
+
+}

src/main/scala/util/JGitUtil.scala

@@ -4,6 +4,7 @@ import org.eclipse.jgit.api.Git
 import util.Directory._
 import util.StringUtil._
 import util.ControlUtil._
+import scala.annotation.tailrec
 import scala.collection.JavaConverters._
 import org.eclipse.jgit.lib._
 import org.eclipse.jgit.revwalk._
@@ -12,8 +13,9 @@ import org.eclipse.jgit.treewalk._
 import org.eclipse.jgit.treewalk.filter._
 import org.eclipse.jgit.diff.DiffEntry.ChangeType
 import org.eclipse.jgit.errors.{ConfigInvalidException, MissingObjectException}
+import org.eclipse.jgit.transport.RefSpec
 import java.util.Date
-import org.eclipse.jgit.api.errors.NoHeadException
+import org.eclipse.jgit.api.errors.{JGitInternalException, InvalidRefNameException, RefAlreadyExistsException, NoHeadException}
 import service.RepositoryService
 import org.eclipse.jgit.dircache.DirCacheEntry
 import org.slf4j.LoggerFactory
@@ -77,8 +79,8 @@ object JGitUtil {
     
     def this(rev: org.eclipse.jgit.revwalk.RevCommit) = this(
         rev.getName,
-        rev.getFullMessage,
         rev.getShortMessage,
+        rev.getFullMessage,
         rev.getParents().map(_.name).toList,
         rev.getAuthorIdent.getWhen,
         rev.getAuthorIdent.getName,
@@ -190,38 +192,23 @@ object JGitUtil {
    * @return HTML of the file list
    */
   def getFileList(git: Git, revision: String, path: String = "."): List[FileInfo] = {
-    val list = new scala.collection.mutable.ListBuffer[(ObjectId, FileMode, String, String, Option[String])]
+    var list = new scala.collection.mutable.ListBuffer[(ObjectId, FileMode, String, String, Option[String])]
 
     using(new RevWalk(git.getRepository)){ revWalk =>
       val objectId  = git.getRepository.resolve(revision)
       val revCommit = revWalk.parseCommit(objectId)
 
-      using(new TreeWalk(git.getRepository)){ treeWalk =>
+      val treeWalk = if (path == ".") {
+        val treeWalk = new TreeWalk(git.getRepository)
         treeWalk.addTree(revCommit.getTree)
-        if(path != "."){
-          treeWalk.setRecursive(true)
-          treeWalk.setFilter(new TreeFilter(){
-
-            var stopRecursive = false
-
-            def include(walker: TreeWalk): Boolean = {
-              val targetPath = walker.getPathString
-              if((path + "/").startsWith(targetPath)){
-                true
-              } else if(targetPath.startsWith(path + "/") && targetPath.substring(path.length + 1).indexOf('/') < 0){
-                stopRecursive = true
-                treeWalk.setRecursive(false)
-                true
+        treeWalk
       } else {
-                false
-              }
+        val treeWalk = TreeWalk.forPath(git.getRepository, path, revCommit.getTree)
+        treeWalk.enterSubtree()
+        treeWalk
       }
 
-            def shouldBeRecursive(): Boolean = !stopRecursive
-
-            override def clone: TreeFilter = return this
-          })
-        }
+      using(treeWalk) { treeWalk =>
         while (treeWalk.next()) {
           // submodule
           val linkUrl = if(treeWalk.getFileMode(0) == FileMode.GITLINK){
@@ -230,6 +217,31 @@ object JGitUtil {
 
           list.append((treeWalk.getObjectId(0), treeWalk.getFileMode(0), treeWalk.getPathString, treeWalk.getNameString, linkUrl))
         }
+
+        list.transform(tuple =>
+          if (tuple._2 != FileMode.TREE)
+            tuple
+          else
+            simplifyPath(tuple)
+        )
+
+        @tailrec
+        def simplifyPath(tuple: (ObjectId, FileMode, String, String, Option[String])): (ObjectId, FileMode, String, String, Option[String]) = {
+          val list = new scala.collection.mutable.ListBuffer[(ObjectId, FileMode, String, String, Option[String])]
+          using(new TreeWalk(git.getRepository)) { walk =>
+            walk.addTree(tuple._1)
+            while (walk.next() && list.size < 2) {
+              val linkUrl = if (walk.getFileMode(0) == FileMode.GITLINK) {
+                getSubmodules(git, revCommit.getTree).find(_.path == walk.getPathString).map(_.url)
+              } else None
+              list.append((walk.getObjectId(0), walk.getFileMode(0), tuple._3 + "/" + walk.getPathString, tuple._4 + "/" + walk.getNameString, linkUrl))
+            }
+          }
+          if (list.size != 1 || list.exists(_._2 != FileMode.TREE))
+            tuple
+          else
+            simplifyPath(list(0))
+        }
       }
     }
 
@@ -496,6 +508,17 @@ object JGitUtil {
     }.find(_._1 != null)
   }
 
+  def createBranch(git: Git, fromBranch: String, newBranch: String) = {
+    try {
+      git.branchCreate().setStartPoint(fromBranch).setName(newBranch).call()
+      Right("Branch created.")
+    } catch {
+      case e: RefAlreadyExistsException => Left("Sorry, that branch already exists.")
+      // JGitInternalException occurs when new branch name is 'a' and the branch whose name is 'a/*' exists.
+      case _: InvalidRefNameException | _: JGitInternalException => Left("Sorry, that name is invalid.")
+    }
+  }
+
   def createDirCacheEntry(path: String, mode: FileMode, objectId: ObjectId): DirCacheEntry = {
     val entry = new DirCacheEntry(path)
     entry.setFileMode(mode)
@@ -504,7 +527,7 @@ object JGitUtil {
   }
 
   def createNewCommit(git: Git, inserter: ObjectInserter, headId: AnyObjectId, treeId: AnyObjectId,
-                              fullName: String, mailAddress: String, message: String): ObjectId = {
+                      ref: String, fullName: String, mailAddress: String, message: String): ObjectId = {
     val newCommit = new CommitBuilder()
     newCommit.setCommitter(new PersonIdent(fullName, mailAddress))
     newCommit.setAuthor(new PersonIdent(fullName, mailAddress))
@@ -518,7 +541,7 @@ object JGitUtil {
     inserter.flush()
     inserter.release()
 
-    val refUpdate = git.getRepository.updateRef(Constants.HEAD)
+    val refUpdate = git.getRepository.updateRef(ref)
     refUpdate.setNewObjectId(newHeadId)
     refUpdate.update()
 
@@ -652,4 +675,34 @@ object JGitUtil {
       }.head.id
     }
 
+  /**
+   * Fetch pull request contents into refs/pull/${issueId}/head and return (commitIdTo, commitIdFrom)
+   */
+  def updatePullRequest(userName: String, repositoryName:String, branch: String, issueId: Int,
+                        requestUserName: String, requestRepositoryName: String, requestBranch: String):(String, String) =
+    using(Git.open(Directory.getRepositoryDir(userName, repositoryName)),
+          Git.open(Directory.getRepositoryDir(requestUserName, requestRepositoryName))){ (oldGit, newGit) =>
+      oldGit.fetch
+        .setRemote(Directory.getRepositoryDir(requestUserName, requestRepositoryName).toURI.toString)
+        .setRefSpecs(new RefSpec(s"refs/heads/${requestBranch}:refs/pull/${issueId}/head").setForceUpdate(true))
+        .call
+
+      val commitIdTo = oldGit.getRepository.resolve(s"refs/pull/${issueId}/head").getName
+      val commitIdFrom = getForkedCommitId(oldGit, newGit,
+        userName, repositoryName, branch,
+        requestUserName, requestRepositoryName, requestBranch)
+      (commitIdTo, commitIdFrom)
+    }
+
+  /**
+   * Returns the last modified commit of specified path
+   * @param git the Git object
+   * @param startCommit the search base commit id
+   * @param path the path of target file or directory
+   * @return the last modified commit of specified path
+   */
+  def getLastModifiedCommit(git: Git, startCommit: RevCommit, path: String): RevCommit = {
+    return git.log.add(startCommit).addPath(path).setMaxCount(1).call.iterator.next
+  }
+
 }

src/main/scala/util/LDAPUtil.scala

@@ -48,6 +48,7 @@ object LDAPUtil {
       dn       = ldapSettings.bindDN.getOrElse(""),
       password = ldapSettings.bindPassword.getOrElse(""),
       tls      = ldapSettings.tls.getOrElse(false),
+      ssl      = ldapSettings.ssl.getOrElse(false),
       keystore = ldapSettings.keystore.getOrElse(""),
       error    = "System LDAP authentication failed."
     ){ conn =>
@@ -65,6 +66,7 @@ object LDAPUtil {
       dn       = userDN,
       password = password,
       tls      = ldapSettings.tls.getOrElse(false),
+      ssl      = ldapSettings.ssl.getOrElse(false),
       keystore = ldapSettings.keystore.getOrElse(""),
       error    = "User LDAP Authentication Failed."
     ){ conn =>
@@ -96,7 +98,7 @@ object LDAPUtil {
     }).replaceAll("[^a-zA-Z0-9\\-_.]", "").replaceAll("^[_\\-]", "")
   }
 
-  private def bind[A](host: String, port: Int, dn: String, password: String, tls: Boolean, keystore: String, error: String)
+  private def bind[A](host: String, port: Int, dn: String, password: String, tls: Boolean, ssl: Boolean, keystore: String, error: String)
                   (f: LDAPConnection => Either[String, A]): Either[String, A] = {
     if (tls) {
       // Dynamically set Sun as the security provider
@@ -109,7 +111,13 @@ object LDAPUtil {
       }
     }
 
-    val conn: LDAPConnection = new LDAPConnection(new LDAPJSSEStartTLSFactory())
+    val conn: LDAPConnection = 
+	if(ssl) {
+		new LDAPConnection(new LDAPJSSESecureSocketFactory()) 
+	}else {
+		new LDAPConnection(new LDAPJSSEStartTLSFactory())
+	}
+
     try {
       // Connect to the server
       conn.connect(host, port)

src/main/scala/view/AvatarImageProvider.scala

@@ -1,7 +1,7 @@
 package view
 
 import service.RequestCache
-import twirl.api.Html
+import play.twirl.api.Html
 import util.StringUtil
 
 trait AvatarImageProvider { self: RequestCache =>

src/main/scala/view/LinkConverter.scala

@@ -12,7 +12,7 @@ trait LinkConverter { self: RequestCache =>
                                  issueIdPrefix: String =  "#")(implicit context: app.Context): String = {
     value
       // escape HTML tags
-      .replaceAll("&", "&amp;").replaceAll("<", "&lt;").replaceAll(">", "&gt;").replaceAll("\"", "&quot;")
+      .replace("&", "&amp;").replace("<", "&lt;").replace(">", "&gt;").replace("\"", "&quot;")
       // convert issue id to link
       .replaceBy(("(?<=(^|\\W))" + issueIdPrefix + "([0-9]+)(?=(\\W|$))").r){ m =>
         getIssue(repository.owner, repository.name, m.group(2)) match {

src/main/scala/view/Markdown.scala

@@ -9,6 +9,7 @@ import org.pegdown.ast._
 import org.pegdown.LinkRenderer.Rendering
 import java.text.Normalizer
 import java.util.Locale
+import java.util.regex.Pattern
 import scala.collection.JavaConverters._
 import service.{RequestCache, WikiService}
 
@@ -17,23 +18,38 @@ object Markdown {
   /**
    * Converts Markdown of Wiki pages to HTML.
    */
-  def toHtml(markdown: String, repository: service.RepositoryService.RepositoryInfo,
-             enableWikiLink: Boolean, enableRefsLink: Boolean)(implicit context: app.Context): String = {
+  def toHtml(markdown: String,
+             repository: service.RepositoryService.RepositoryInfo,
+             enableWikiLink: Boolean,
+             enableRefsLink: Boolean,
+             enableTaskList: Boolean = false,
+             hasWritePermission: Boolean = false,
+             pages: List[String] = Nil)(implicit context: app.Context): String = {
+
     // escape issue id
-    val source = if(enableRefsLink){
+    val s = if(enableRefsLink){
       markdown.replaceAll("(?<=(\\W|^))#(\\d+)(?=(\\W|$))", "issue:$2")
     } else markdown
 
+    // escape task list
+    val source = if(enableTaskList){
+      GitBucketHtmlSerializer.escapeTaskList(s)
+    } else s
+
     val rootNode = new PegDownProcessor(
-      Extensions.AUTOLINKS | Extensions.WIKILINKS | Extensions.FENCED_CODE_BLOCKS | Extensions.TABLES | Extensions.HARDWRAPS
+      Extensions.AUTOLINKS | Extensions.WIKILINKS | Extensions.FENCED_CODE_BLOCKS | Extensions.TABLES | Extensions.HARDWRAPS | Extensions.SUPPRESS_ALL_HTML
     ).parseMarkdown(source.toCharArray)
 
-    new GitBucketHtmlSerializer(markdown, repository, enableWikiLink, enableRefsLink).toHtml(rootNode)
+    new GitBucketHtmlSerializer(markdown, repository, enableWikiLink, enableRefsLink, enableTaskList, hasWritePermission, pages).toHtml(rootNode)
   }
 }
 
-class GitBucketLinkRender(context: app.Context, repository: service.RepositoryService.RepositoryInfo,
-                          enableWikiLink: Boolean) extends LinkRenderer with WikiService {
+class GitBucketLinkRender(
+    context: app.Context,
+    repository: service.RepositoryService.RepositoryInfo,
+    enableWikiLink: Boolean,
+    pages: List[String]) extends LinkRenderer with WikiService {
+
   override def render(node: WikiLinkNode): Rendering = {
     if(enableWikiLink){
       try {
@@ -47,7 +63,7 @@ class GitBucketLinkRender(context: app.Context, repository: service.RepositorySe
 
         val url = repository.httpUrl.replaceFirst("/git/", "/").stripSuffix(".git") + "/wiki/" + StringUtil.urlEncode(page)
 
-        if(getWikiPage(repository.owner, repository.name, page).isDefined){
+        if(pages.contains(page)){
           new Rendering(url, label)
         } else {
           new Rendering(url, label).withAttribute("class", "absent")
@@ -82,15 +98,19 @@ class GitBucketHtmlSerializer(
     markdown: String,
     repository: service.RepositoryService.RepositoryInfo,
     enableWikiLink: Boolean,
-    enableRefsLink: Boolean
+    enableRefsLink: Boolean,
+    enableTaskList: Boolean,
+    hasWritePermission: Boolean,
+    pages: List[String]
   )(implicit val context: app.Context) extends ToHtmlSerializer(
-    new GitBucketLinkRender(context, repository, enableWikiLink),
+    new GitBucketLinkRender(context, repository, enableWikiLink, pages),
     Map[String, VerbatimSerializer](VerbatimSerializer.DEFAULT -> new GitBucketVerbatimSerializer).asJava
   ) with LinkConverter with RequestCache {
 
-  override protected def printImageTag(imageNode: SuperNode, url: String): Unit =
-    printer.print("<a target=\"_blank\" href=\"").print(fixUrl(url)).print("\">")
-           .print("<img src=\"").print(fixUrl(url)).print("\"  alt=\"").printEncoded(printChildrenToString(imageNode)).print("\"/></a>")
+  override protected def printImageTag(imageNode: SuperNode, url: String): Unit = {
+    printer.print("<a target=\"_blank\" href=\"").print(fixUrl(url, true)).print("\">")
+           .print("<img src=\"").print(fixUrl(url, true)).print("\"  alt=\"").printEncoded(printChildrenToString(imageNode)).print("\"/></a>")
+  }
 
   override protected def printLink(rendering: LinkRenderer.Rendering): Unit = {
     printer.print('<').print('a')
@@ -101,9 +121,21 @@ class GitBucketHtmlSerializer(
     printer.print('>').print(rendering.text).print("</a>")
   }
 
-  private def fixUrl(url: String): String = {
-    if(!enableWikiLink || url.startsWith("http://") || url.startsWith("https://") || url.startsWith("#")){
+  private def fixUrl(url: String, isImage: Boolean = false): String = {
+    if(url.startsWith("http://") || url.startsWith("https://") || url.startsWith("#") || url.startsWith("/")){
       url
+    } else if(!enableWikiLink){
+      if(context.currentPath.contains("/blob/")){
+        url + (if(isImage) "?raw=true" else "")
+      } else if(context.currentPath.contains("/tree/")){
+        val paths = context.currentPath.split("/")
+        val branch = if(paths.length > 3) paths.drop(4).mkString("/") else repository.repository.defaultBranch
+        repository.httpUrl.replaceFirst("/git/", "/").stripSuffix(".git") + "/blob/" + branch + "/" + url + (if(isImage) "?raw=true" else "")
+      } else {
+        val paths = context.currentPath.split("/")
+        val branch = if(paths.length > 3) paths.last else repository.repository.defaultBranch
+        repository.httpUrl.replaceFirst("/git/", "/").stripSuffix(".git") + "/blob/" + branch + "/" + url + (if(isImage) "?raw=true" else "")
+      }
     } else {
       repository.httpUrl.replaceFirst("/git/", "/").stripSuffix(".git") + "/wiki/_blob/" + url
     }
@@ -130,7 +162,10 @@ class GitBucketHtmlSerializer(
 
   override def visit(node: TextNode): Unit =  {
     // convert commit id and username to link.
-    val text = if(enableRefsLink) convertRefsLinks(node.getText, repository, "issue:") else node.getText
+    val t = if(enableRefsLink) convertRefsLinks(node.getText, repository, "issue:") else node.getText
+
+    // convert task list to checkbox.
+    val text = if(enableTaskList) GitBucketHtmlSerializer.convertCheckBox(t, hasWritePermission) else t
 
     if (abbreviations.isEmpty) {
       printer.print(text)
@@ -138,6 +173,54 @@ class GitBucketHtmlSerializer(
       printWithAbbreviations(text)
     }
   }
+
+  override def visit(node: BulletListNode): Unit = {
+    if (printChildrenToString(node).contains("""class="task-list-item-checkbox" """)) {
+      printer.println().print("""<ul class="task-list">""").indent(+2)
+      visitChildren(node)
+      printer.indent(-2).println().print("</ul>")
+    } else {
+      printIndentedTag(node, "ul")
+    }
+  }
+
+  override def visit(node: ListItemNode): Unit = {
+    if (printChildrenToString(node).contains("""class="task-list-item-checkbox" """)) {
+      printer.println()
+      printer.print("""<li class="task-list-item">""")
+      visitChildren(node)
+      printer.print("</li>")
+    } else {
+      printer.println()
+      printTag(node, "li")
+    }
+  }
+
+  override def visit(node: ExpLinkNode) {
+    printLink(linkRenderer.render(node, printLinkChildrenToString(node)))
+  }
+
+  def printLinkChildrenToString(node: SuperNode) = {
+    val priorPrinter = printer
+    printer = new Printer()
+    visitLinkChildren(node)
+    val result = printer.getString()
+    printer = priorPrinter
+    result
+  }
+
+  def visitLinkChildren(node: SuperNode) {
+    import scala.collection.JavaConversions._
+    node.getChildren.foreach(child => child match {
+      case node: ExpImageNode => visitLinkChild(node)
+      case node: SuperNode => visitLinkChildren(node)
+      case _ => child.accept(this)
+    })
+  }
+
+  def visitLinkChild(node: ExpImageNode) {
+    printer.print("<img src=\"").print(fixUrl(node.url, true)).print("\"  alt=\"").printEncoded(printChildrenToString(node)).print("\"/>")
+  }
 }
 
 object GitBucketHtmlSerializer {
@@ -150,4 +233,14 @@ object GitBucketHtmlSerializer {
     val noSpecialChars = StringUtil.urlEncode(normalized)
     noSpecialChars.toLowerCase(Locale.ENGLISH)
   }
+
+  def escapeTaskList(text: String): String = {
+    Pattern.compile("""^( *)- \[([x| ])\] """, Pattern.MULTILINE).matcher(text).replaceAll("$1* task:$2: ")
+  }
+
+  def convertCheckBox(text: String, hasWritePermission: Boolean): String = {
+    val disabled = if (hasWritePermission) "" else "disabled"
+    text.replaceAll("task:x:", """<input type="checkbox" class="task-list-item-checkbox" checked="checked" """ + disabled + "/>")
+        .replaceAll("task: :", """<input type="checkbox" class="task-list-item-checkbox" """ + disabled + "/>")
+  }
 }

src/main/scala/view/helpers.scala

@@ -1,7 +1,7 @@
 package view
-import java.util.Date
+import java.util.{Locale, Date, TimeZone}
 import java.text.SimpleDateFormat
-import twirl.api.Html
+import play.twirl.api.Html
 import util.StringUtil
 import service.RequestCache
 
@@ -15,10 +15,53 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
    */
   def datetime(date: Date): String = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss").format(date)
 
+  val timeUnits = List(
+    (1000L, "second"),
+    (1000L * 60, "minute"),
+    (1000L * 60 * 60, "hour"),
+    (1000L * 60 * 60 * 24, "day"),
+    (1000L * 60 * 60 * 24 * 30, "month"),
+    (1000L * 60 * 60 * 24 * 365, "year")
+  ).reverse
+
+  /**
+   * Format java.util.Date to "x {seconds/minutes/hours/days/months/years} ago"
+   */
+  def datetimeAgo(date: Date): String = {
+    val duration = new Date().getTime - date.getTime
+    timeUnits.find(tuple => duration / tuple._1 > 0) match {
+      case Some((unitValue, unitString)) =>
+        val value = duration / unitValue
+        s"${value} ${unitString}${if (value > 1) "s" else ""} ago"
+      case None => "just now"
+    }
+  }
+
+  /**
+   * Format java.util.Date to "x {seconds/minutes/hours/days} ago"
+   * If duration over 1 month, format to "d MMM (yyyy)"
+   */
+  def datetimeAgoRecentOnly(date: Date): String = {
+    val duration = new Date().getTime - date.getTime
+    timeUnits.find(tuple => duration / tuple._1 > 0) match {
+      case Some((_, "month")) => s"on ${new SimpleDateFormat("d MMM", Locale.ENGLISH).format(date)}"
+      case Some((_, "year")) => s"on ${new SimpleDateFormat("d MMM yyyy", Locale.ENGLISH).format(date)}"
+      case Some((unitValue, unitString)) =>
+        val value = duration / unitValue
+        s"${value} ${unitString}${if (value > 1) "s" else ""} ago"
+      case None => "just now"
+    }
+  }
+
+
   /**
    * Format java.util.Date to "yyyy-MM-dd'T'hh:mm:ss'Z'".
    */
-  def datetimeRFC3339(date: Date): String = new SimpleDateFormat("yyyy-MM-dd'T'hh:mm:ss'Z'").format(date).replaceAll("(\\d\\d)(\\d\\d)$","$1:$2")
+  def datetimeRFC3339(date: Date): String = {
+    val sf = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss'Z'")
+    sf.setTimeZone(TimeZone.getTimeZone("UTC"))
+    sf.format(date)
+  }
 
   /**
    * Format java.util.Date to "yyyy-MM-dd".
@@ -43,9 +86,14 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
   /**
    * Converts Markdown of Wiki pages to HTML.
    */
-  def markdown(value: String, repository: service.RepositoryService.RepositoryInfo,
-               enableWikiLink: Boolean, enableRefsLink: Boolean)(implicit context: app.Context): Html =
-    Html(Markdown.toHtml(value, repository, enableWikiLink, enableRefsLink))
+  def markdown(value: String,
+               repository: service.RepositoryService.RepositoryInfo,
+               enableWikiLink: Boolean,
+               enableRefsLink: Boolean,
+               enableTaskList: Boolean = false,
+               hasWritePermission: Boolean = false,
+               pages: List[String] = Nil)(implicit context: app.Context): Html =
+    Html(Markdown.toHtml(value, repository, enableWikiLink, enableRefsLink, enableTaskList, hasWritePermission, pages))
 
   def renderMarkup(filePath: List[String], fileContent: String, branch: String,
                    repository: service.RepositoryService.RepositoryInfo,
@@ -104,9 +152,10 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
       .replaceAll("\\[issue:([^\\s]+?)/([^\\s]+?)#((\\d+))\\]"     , s"""<a href="${context.path}/$$1/$$2/issues/$$3">$$1/$$2#$$3</a>""")
       .replaceAll("\\[pullreq:([^\\s]+?)/([^\\s]+?)#((\\d+))\\]"   , s"""<a href="${context.path}/$$1/$$2/pull/$$3">$$1/$$2#$$3</a>""")
       .replaceAll("\\[repo:([^\\s]+?)/([^\\s]+?)\\]"               , s"""<a href="${context.path}/$$1/$$2\">$$1/$$2</a>""")
-      .replaceAll("\\[branch:([^\\s]+?)/([^\\s]+?)#([^\\s]+?)\\]", (m: Match) => s"""<a href="${context.path}/${m.group(1)}/${m.group(2)}/tree/${encodeRefName(m.group(3))}">${m.group(3)}</a>""")
+      .replaceAll("\\[branch:([^\\s]+?)/([^\\s]+?)#([^\\s]+?)\\]"  , (m: Match) => s"""<a href="${context.path}/${m.group(1)}/${m.group(2)}/tree/${encodeRefName(m.group(3))}">${m.group(3)}</a>""")
       .replaceAll("\\[tag:([^\\s]+?)/([^\\s]+?)#([^\\s]+?)\\]"     , (m: Match) => s"""<a href="${context.path}/${m.group(1)}/${m.group(2)}/tree/${encodeRefName(m.group(3))}">${m.group(3)}</a>""")
       .replaceAll("\\[user:([^\\s]+?)\\]"                          , (m: Match) => user(m.group(1)).body)
+      .replaceAll("\\[commit:([^\\s]+?)/([^\\s]+?)\\@([^\\s]+?)\\]", (m: Match) => s"""<a href="${context.path}/${m.group(1)}/${m.group(2)}/commit/${m.group(3)}">${m.group(1)}/${m.group(2)}@${m.group(3).substring(0, 7)}</a>""")
     )
 
   /**
@@ -201,6 +250,8 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
     }
   }
 
+  def pre(value: Html): Html = Html(s"<pre>${value.body.trim.split("\n").map(_.trim).mkString("\n")}</pre>")
+
   /**
    * Implicit conversion to add mkHtml() to Seq[Html].
    */

src/main/twirl/account/newrepo.scala.html

@@ -1,4 +1,5 @@
-@(groupNames: List[String])(implicit context: app.Context)
+@(groupNames: List[String],
+isCreateRepoOptionPublic: Boolean)(implicit context: app.Context)
 @import context._
 @import view.helpers._
 @html.main("Create a New Repository"){
@@ -29,7 +30,7 @@
     </fieldset>
     <fieldset class="margin">
       <label class="radio">
-        <input type="radio" name="isPrivate" value="false" checked>
+        <input type="radio" name="isPrivate" value="false" @if(isCreateRepoOptionPublic){checked}>
         <span class="strong"><img src="@assets/common/images/repo_public.png"/>&nbsp;</i>&nbsp;Public</span><br>
         <div>
           <span>All users and guests can read this repository.</span>
@@ -38,7 +39,7 @@
     </fieldset>
     <fieldset>
       <label class="radio">
-        <input type="radio" name="isPrivate" value="true">
+        <input type="radio" name="isPrivate" value="true" @if(!isCreateRepoOptionPublic){checked}>
         <span class="strong"><img src="@assets/common/images/repo_private.png"/>&nbsp;</i>&nbsp;Private</span><br>
         <div>
           <span>Only collaborators can read this repository.</span>

src/main/twirl/account/repositories.scala.html

@@ -25,7 +25,7 @@
           @if(repository.repository.description.isDefined){
             <div>@repository.repository.description</div>
           }
-          <div><span class="muted small">Last updated: @datetime(repository.repository.lastActivityDate)</span></div>
+          <div><span class="muted small">Updated @helper.html.datetimeago(repository.repository.lastActivityDate)</span></div>
         </div>
       </div>
     }

src/main/twirl/admin/menu.scala.html

@@ -11,9 +11,6 @@
           <li@if(active=="system"){ class="active"}>
             <a href="@path/admin/system">System Settings</a>
           </li>
-          <li@if(active=="plugins"){ class="active"}>
-            <a href="@path/admin/plugins">Plugins</a>
-          </li>
           <li>
             <a href="@path/console/login.jsp">H2 Console</a>
           </li>

src/main/twirl/admin/plugins/available.scala.html

@@ -1,37 +0,0 @@
-@(plugins: List[app.SystemSettingsControllerBase.AvailablePlugin])(implicit context: app.Context)
-@import context._
-@import view.helpers._
-@html.main("Plugins"){
-  @admin.html.menu("plugins"){
-    @tab("available")
-    <form action="@path/admin/plugins/_install" method="POST" validate="true">
-      <table class="table table-bordered">
-        <tr>
-          <th>ID</th>
-          <th>Version</th>
-          <th>Provider</th>
-          <th>Description</th>
-        </tr>
-        @plugins.zipWithIndex.map { case (plugin, i) =>
-          <tr>
-            <td>
-              <input type="checkbox" name="pluginId[@i]" value="@plugin.id"/>
-              @plugin.id
-            </td>
-            <td>@plugin.version</td>
-            <td><a href="@plugin.url">@plugin.author</a></td>
-            <td>@plugin.description</td>
-          </tr>
-        }
-      </table>
-      <input type="submit" id="install-plugins" class="btn btn-success" value="Install selected plugins"/>
-    </form>
-  }
-}
-<script>
-$(function(){
-  $('#install-plugins').click(function(){
-    return confirm('Selected plugin will be installed. Are you sure?');
-  });
-});
-</script>

src/main/twirl/admin/plugins/console.scala.html

@@ -1,37 +0,0 @@
-@()(implicit context: app.Context)
-@import context._
-@import view.helpers._
-@html.main("JavaScript Console"){
-  @admin.html.menu("plugins"){
-    @tab("console")
-    <form method="POST">
-      <div class="box">
-        <div class="box-header">JavaScript Console</div>
-        <div class="box-content">
-          <div id="editor" style="width: 100%; height: 400px;"></div>
-        </div>
-      </div>
-      <fieldset>
-        <input type="button" id="evaluate" class="btn btn-success" value="Evaluate"/>
-      </fieldset>
-    </form>
-  }
-}
-<script src="@assets/vendors/ace/ace.js" type="text/javascript" charset="utf-8"></script>
-<script>
-$(function(){
-  var editor = ace.edit("editor");
-  editor.setTheme("ace/theme/monokai");
-  editor.getSession().setMode("ace/mode/javascript");
-
-  $('#evaluate').click(function(){
-    $.post('@path/admin/plugins/console', {
-      script: editor.getValue()
-    }, function(data){
-      alert('Success: ' + data);
-    }).fail(function(error){
-      alert(error.statusText);
-    });
-  });
-});
-</script>

src/main/twirl/admin/plugins/installed.scala.html

@@ -1,47 +0,0 @@
-@(plugins: List[plugin.Plugin],
-  updatablePlugins: List[app.SystemSettingsControllerBase.AvailablePlugin])(implicit context: app.Context)
-@import context._
-@import view.helpers._
-@html.main("Plugins"){
-  @admin.html.menu("plugins"){
-    @tab("installed")
-    <form method="POST" validate="true">
-      <table class="table table-bordered">
-        <tr>
-          <th>ID</th>
-          <th>Version</th>
-          <th>Provider</th>
-          <th>Description</th>
-        </tr>
-        @plugins.zipWithIndex.map { case (plugin, i) =>
-          <tr>
-            <td>
-              <input type="checkbox" name="pluginId[@i]" value="@plugin.id"/>
-              @plugin.id
-            </td>
-            <td>
-              @plugin.version
-              @updatablePlugins.find(_.id == plugin.id).map { x =>
-                (@x.version is available)
-              }
-            </td>
-            <td><a href="@plugin.url">@plugin.author</a></td>
-            <td>@plugin.description</td>
-          </tr>
-        }
-      </table>
-      <input type="submit" id="update-plugins" class="btn btn-success" value="Update selected plugins" formaction="@path/admin/plugins/_update"/>
-      <input type="submit" id="delete-plugins" class="btn btn-danger" value="Uninstall selected plugins" formaction="@path/admin/plugins/_delete"/>
-    </form>
-  }
-}
-<script>
-$(function(){
-  $('#update-plugins').click(function(){
-    return confirm('Selected plugin will be updated. Are you sure?');
-  });
-  $('#delete-plugins').click(function(){
-    return confirm('Selected plugin will be removed permanently. Are you sure?');
-  });
-});
-</script>

src/main/twirl/admin/plugins/tab.scala.html

@@ -1,9 +0,0 @@
-@(active: String)(implicit context: app.Context)
-@import context._
-<ul class="nav nav-tabs">
-  <li@if(active == "installed"){ class="active"}><a href="@path/admin/plugins">Installed plugins</a></li>
-  <li@if(active == "available"){ class="active"}><a href="@path/admin/plugins/available">Available plugins</a></li>
-  @*
-  <li@if(active == "console"  ){ class="active"}><a href="@path/admin/plugins/console">JavaScript console</a></li>
-  *@
-</ul>

src/main/twirl/admin/system.scala.html

@@ -31,6 +31,14 @@
             You can use this property to adjust URL difference between the reverse proxy and GitBucket.
           </p>
           <!--====================================================================-->
+          <!-- Information -->
+          <!--====================================================================-->
+          <hr>
+          <label><span class="strong">Information</span> (HTML is available)</label>
+          <fieldset>
+            <textarea name="information" style="width: 600px; height: 100px;">@settings.information</textarea>
+          </fieldset>
+          <!--====================================================================-->
           <!-- Account registration -->
           <!--====================================================================-->
           <hr>
@@ -45,6 +53,33 @@
               <span class="strong">Deny</span> - Only administrators can create accounts.
             </label>
           </fieldset>
+          <hr>
+          <label class="strong">Default option to create a new repository</label>
+          <fieldset>
+            <label class="radio">
+              <input type="radio" name="isCreateRepoOptionPublic" value="true"@if(settings.isCreateRepoOptionPublic){ checked}>
+              <span class="strong">Public</span> - All users and guests can read that repository.
+            </label>
+            <label class="radio">
+              <input type="radio" name="isCreateRepoOptionPublic" value="false"@if(!settings.isCreateRepoOptionPublic){ checked}>
+              <span class="strong">Private</span> - Only collaborators can read that repository.
+            </label>
+          </fieldset>
+          <!--====================================================================-->
+          <!-- Anonymous access -->
+          <!--====================================================================-->
+          <hr>
+          <label class="strong">Anonymous access</label>
+          <fieldset>
+            <label class="radio">
+              <input type="radio" name="allowAnonymousAccess" value="true"@if(settings.allowAnonymousAccess){ checked}>
+              <span class="strong">Allow</span> - Anyone can view public repositories, user/group profiles.
+            </label>
+            <label class="radio">
+              <input type="radio" name="allowAnonymousAccess" value="false"@if(!settings.allowAnonymousAccess){ checked}>
+              <span class="strong">Deny</span> - Users must authenticate before viewing any information
+            </label>
+          </fieldset>
           <!--====================================================================-->
           <!-- Services -->
           <!--====================================================================-->
@@ -161,6 +196,13 @@
                 </label>
               </div>
             </div>
+            <div class="control-group">
+              <div class="controls">
+                <label class="checkbox">
+                  <input type="checkbox" name="ldap.ssl"@if(settings.ldap.flatMap(_.ssl).getOrElse(false)){ checked}/> Enable SSL
+                </label>
+              </div>
+            </div>
             <div class="control-group">
               <label class="control-label" for="ldapBindDN">Keystore</label>
               <div class="controls">

src/main/twirl/admin/users/user.scala.html

@@ -16,6 +16,9 @@
                 <input type="checkbox" name="removed" id="removed" value="true" @if(account.get.isRemoved){checked}/>
                 Disable
               </label>
+              <div>
+                <span id="error-removed" class="error"></span>
+              </div>
             }
           </fieldset>
           @if(account.map(_.password.nonEmpty).getOrElse(true)){

src/main/twirl/dashboard/header.scala.html

@@ -0,0 +1,74 @@
+@(openCount: Int,
+  closedCount: Int,
+  condition: service.IssuesService.IssueSearchCondition,
+  groups: List[String])(implicit context: app.Context)
+@import context._
+@import view.helpers._
+<span class="small">
+  <a class="button-link@if(condition.state == "open"){ selected}" href="@condition.copy(state = "open").toURL">
+    <img src="@assets/common/images/status-open@(if(condition.state == "open"){"-active"}).png"/>
+    @openCount Open
+  </a>&nbsp;&nbsp;
+  <a class="button-link@if(condition.state == "closed"){ selected}" href="@condition.copy(state = "closed").toURL">
+    <img src="@assets/common/images/status-closed@(if(condition.state == "closed"){"-active"}).png"/>
+    @closedCount Closed
+  </a>
+</span>
+<div class="pull-right" id="table-issues-control">
+  @helper.html.dropdown("Visibility", flat = true){
+    <li>
+      <a href="@(condition.copy(visibility = (if(condition.visibility == Some("private")) None else Some("private"))).toURL)">
+        @helper.html.checkicon(condition.visibility == Some("private"))
+        Private repository only
+      </a>
+    </li>
+    <li>
+      <a href="@(condition.copy(visibility = (if(condition.visibility == Some("public")) None else Some("public"))).toURL)">
+        @helper.html.checkicon(condition.visibility == Some("public"))
+        Public repository only
+      </a>
+    </li>
+  }
+  @helper.html.dropdown("Organization", flat = true){
+    @groups.map { group =>
+      <li>
+        <a href="@((if(condition.groups.contains(group)) condition.copy(groups = condition.groups - group) else condition.copy(groups = condition.groups + group)).toURL)">
+          @helper.html.checkicon(condition.groups.contains(group))
+          @avatar(group, 20) @group
+        </a>
+      </li>
+    }
+  }
+  @helper.html.dropdown("Sort", flat = true){
+    <li>
+      <a href="@condition.copy(sort="created",  direction="desc").toURL">
+        @helper.html.checkicon(condition.sort == "created"  && condition.direction == "desc") Newest
+      </a>
+    </li>
+    <li>
+      <a href="@condition.copy(sort="created",  direction="asc" ).toURL">
+        @helper.html.checkicon(condition.sort == "created"  && condition.direction == "asc") Oldest
+      </a>
+    </li>
+    <li>
+      <a href="@condition.copy(sort="comments", direction="desc").toURL">
+       @helper.html.checkicon(condition.sort == "comments"  && condition.direction == "desc") Most commented
+      </a>
+    </li>
+    <li>
+      <a href="@condition.copy(sort="comments", direction="asc" ).toURL">
+        @helper.html.checkicon(condition.sort == "comments"  && condition.direction == "asc") Least commented
+      </a>
+    </li>
+    <li>
+      <a href="@condition.copy(sort="updated",  direction="desc").toURL">
+        @helper.html.checkicon(condition.sort == "updated"  && condition.direction == "desc") Recently updated
+      </a>
+    </li>
+    <li>
+      <a href="@condition.copy(sort="updated",  direction="asc" ).toURL">
+        @helper.html.checkicon(condition.sort == "updated"  && condition.direction == "asc") Least recently updated
+      </a>
+    </li>
+  }
+</div>

src/main/twirl/dashboard/issues.scala.html

@@ -1,50 +1,16 @@
-@(listparts: twirl.api.Html,
-  allCount: Int,
-  assignedCount: Int,
-  createdByCount: Int,
-  repositories: List[(String, String, Int)],
+@(issues: List[service.IssuesService.IssueInfo],
+  page: Int,
+  openCount: Int,
+  closedCount: Int,
   condition: service.IssuesService.IssueSearchCondition,
-  filter: String)(implicit context: app.Context)
+  filter: String,
+  groups: List[String])(implicit context: app.Context)
 @import context._
 @import view.helpers._
-@html.main("Your Issues"){
-<div class="container">
+@html.main("Issues"){
   @dashboard.html.tab("issues")
-  <div class="row-fluid">
-    <div class="span3">
-      <ul class="nav nav-pills nav-stacked">
-        <li@if(filter == "all"){ class="active"}>
-          <a href="@path/dashboard/issues/repos@condition.toURL">
-            <span class="count-right">@allCount</span>
-            In your repositories
-          </a>
-        </li>
-        <li@if(filter == "assigned"){ class="active"}>
-          <a href="@path/dashboard/issues/assigned@condition.toURL">
-            <span class="count-right">@assignedCount</span>
-            Assigned to you
-          </a>
-        </li>
-        <li@if(filter == "created_by"){ class="active"}>
-          <a href="@path/dashboard/issues/created_by@condition.toURL">
-            <span class="count-right">@createdByCount</span>
-            Created by you
-          </a>
-        </li>
-      </ul>
-      <hr/>
-      <ul class="nav nav-pills nav-stacked small">
-        @repositories.map { case (owner, name, count) =>
-        <li@if(condition.repo == Some(owner + "/" + name)){ class="active"}>
-          <a href="@condition.copy(repo = Some(owner + "/" + name)).toURL">
-            <span class="count-right">@count</span>
-            @owner/@name
-          </a>
-        </li>
-        }
-      </ul>
+  <div class="container">
+    @issuesnavi(filter, "issues", condition)
+    @issueslist(issues, page, openCount, closedCount, condition, filter, groups)
   </div>
-    @listparts
-  </div>
-</div>
 }

src/main/twirl/dashboard/issueslist.scala.html

@@ -0,0 +1,60 @@
+@(issues: List[service.IssuesService.IssueInfo],
+  page: Int,
+  openCount: Int,
+  closedCount: Int,
+  condition: service.IssuesService.IssueSearchCondition,
+  filter: String,
+  groups: List[String])(implicit context: app.Context)
+@import context._
+@import view.helpers._
+@import service.IssuesService.IssueInfo
+<table class="table table-bordered table-hover table-issues">
+  <tr>
+    <th style="background-color: #eee;">
+      @dashboard.html.header(openCount, closedCount, condition, groups)
+    </th>
+  </tr>
+  @issues.map { case IssueInfo(issue, labels, milestone, commentCount) =>
+  <tr>
+    <td style="padding-top: 15px; padding-bottom: 15px;">
+      @if(issue.isPullRequest){
+        <img src="@assets/common/images/pullreq-@(if(issue.closed) "closed" else "open").png"/>
+      } else {
+        <img src="@assets/common/images/issue-@(if(issue.closed) "closed" else "open").png"/>
+      }
+      <a href="@path/@issue.userName/@issue.repositoryName">@issue.userName/@issue.repositoryName</a>&nbsp;&#xFF65;
+      @if(issue.isPullRequest){
+        <a href="@path/@issue.userName/@issue.repositoryName/pull/@issue.issueId" class="issue-title">@issue.title</a>
+      } else {
+        <a href="@path/@issue.userName/@issue.repositoryName/issues/@issue.issueId" class="issue-title">@issue.title</a>
+      }
+      @labels.map { label =>
+        <span class="label-color small" style="background-color: #@label.color; color: #@label.fontColor; padding-left: 4px; padding-right: 4px">@label.labelName</span>
+      }
+      <span class="pull-right muted">
+        @issue.assignedUserName.map { userName =>
+          @avatar(userName, 20, tooltip = true)
+        }
+        @if(commentCount > 0){
+          <a href="@path/@issue.userName/@issue.repositoryName/issues/@issue.issueId" class="issue-comment-count">
+            <img src="@assets/common/images/comment-active.png"> @commentCount
+          </a>
+        } else {
+          <a href="@path/@issue.userName/@issue.repositoryName/issues/@issue.issueId" class="issue-comment-count" style="color: silver;">
+            <img src="@assets/common/images/comment.png"> @commentCount
+          </a>
+        }
+      </span>
+      <div class="small muted" style="margin-left: 20px; margin-top: 5px;">
+        #@issue.issueId opened by @user(issue.openedUserName, styleClass="username") @datetime(issue.registeredDate)
+        @milestone.map { milestone =>
+          <span style="margin: 20px;"><a href="@condition.copy(milestoneId = Some(Some(1))).toURL" class="username"><img src="@assets/common/images/milestone.png"> @milestone</a></span>
+        }
+      </div>
+    </td>
+  </tr>
+  }
+</table>
+<div class="pull-right">
+  @helper.html.paginator(page, (if(condition.state == "open") openCount else closedCount), service.IssuesService.IssueLimit, 10, condition.toURL)
+</div>

src/main/twirl/dashboard/issuesnavi.scala.html

@@ -0,0 +1,22 @@
+@(filter: String,
+  active: String,
+  condition: service.IssuesService.IssueSearchCondition)(implicit context: app.Context)
+@import context._
+@import view.helpers._
+<ul class="nav nav-pills-group pull-left fill-width">
+  <li class="@if(filter == "created_by"){active} first">
+    <a href="@path/dashboard/@active/created_by@condition.copy(author = None, assigned = None).toURL">Created</a>
+  </li>
+  <li class="@if(filter == "assigned"){active}">
+    <a href="@path/dashboard/@active/assigned@condition.copy(author = None, assigned = None).toURL">Assigned</a>
+  </li>
+  <li class="@if(filter == "mentioned"){active} last">
+    <a href="@path/dashboard/@active/mentioned@condition.copy(author = None, assigned = None).toURL">Mentioned</a>
+  </li>
+  <li class="pull-right">
+    <form method="GET" id="search-filter-form" action="@path/dashboard/@active" style="margin-bottom: 0px;">
+      <input type="text" id="search-filter-box" class="input-xlarge" name="q" style="height: 24px; width: 400px;"
+             value="is:@{if(active == "issues") "issue" else "pr"} @condition.toFilterString"/>
+    </form>
+  </li>
+</ul>

src/main/twirl/dashboard/pulls.scala.html

@@ -1,42 +1,16 @@
-@(listparts: twirl.api.Html,
-  counts: List[service.PullRequestService.PullRequestCount],
-  repositories: List[(String, String, Int)],
+@(issues: List[service.IssuesService.IssueInfo],
+  page: Int,
+  openCount: Int,
+  closedCount: Int,
   condition: service.IssuesService.IssueSearchCondition,
-  filter: String)(implicit context: app.Context)
+  filter: String,
+  groups: List[String])(implicit context: app.Context)
 @import context._
 @import view.helpers._
-@html.main("Your Issues"){
-<div class="container">
+@html.main("Pull Requests"){
   @dashboard.html.tab("pulls")
-  <div class="row-fluid">
-    <div class="span3">
-      <ul class="nav nav-pills nav-stacked">
-        <li@if(filter == "created_by"){ class="active"}>
-          <a href="@path/dashboard/pulls/owned@condition.toURL">
-            <span class="count-right">@counts.find(_.userName == loginAccount.get.userName).map(_.count).getOrElse(0)</span>
-            Yours
-          </a>
-        </li>
-        <li@if(filter == "not_created_by"){ class="active"}>
-          <a href="@path/dashboard/pulls/public@condition.toURL">
-            <span class="count-right">@counts.filter(_.userName != loginAccount.get.userName).map(_.count).sum</span>
-            Public
-          </a>
-        </li>
-      </ul>
-      <hr/>
-      <ul class="nav nav-pills nav-stacked small">
-        @repositories.map { case (owner, name, count) =>
-        <li@if(condition.repo == Some(owner + "/" + name)){ class="active"}>
-          <a href="@path/dashboard/pulls/for/@owner/@name">
-            <span class="count-right">@count</span>
-            @owner/@name
-          </a>
-        </li>
-        }
-      </ul>
+  <div class="container">
+    @issuesnavi(filter, "pulls", condition)
+    @issueslist(issues, page, openCount, closedCount, condition, filter, groups)
   </div>
-    @listparts
-  </div>
-</div>
 }

src/main/twirl/dashboard/tab.scala.html

@@ -1,13 +1,47 @@
 @(active: String = "")(implicit context: app.Context)
 @import context._
 @import view.helpers._
-<ul class="nav nav-tabs">
-  <li@if(active == ""){ class="active"}><a href="@path/">News Feed</a></li>
+<div class="dashboard-nav">
+  <div class="container">
+    <a href="@path/" @if(active == ""){ class="active"}>
+      <img src="@assets/common/images/menu-feed.png">
+      News Feed
+    </a>
     @if(loginAccount.isDefined){
-    <li@if(active == "pulls" ){ class="active"}><a href="@path/dashboard/pulls">Pull Requests</a></li>
-    <li@if(active == "issues"){ class="active"}><a href="@path/dashboard/issues/repos">Issues</a></li>
+      <a href="@path/dashboard/pulls" @if(active == "pulls" ){ class="active"}>
+        <img src="@assets/common/images/menu-pulls.png">
+        Pull Requests
+      </a>
+      <a href="@path/dashboard/issues" @if(active == "issues"){ class="active"}>
+        <img src="@assets/common/images/menu-issues.png">
+        Issues
+      </a>
     }
-  @if(active == ""){
-    <li class="pull-right"><a href="@path/activities.atom"><img src="@assets/common/images/feed.png" alt="activities"></a></li>
-  }
-</ul>
+  </div>
+</div>
+<style type="text/css">
+div.dashboard-nav {
+  border-bottom: 1px solid #ddd;
+  text-align: right;
+  height: 32px;
+  margin-bottom: 20px;
+}
+
+div.dashboard-nav a  {
+  line-height: 10px;
+  margin-left: 20px;
+  padding-bottom: 13px;
+  padding-left: 4px;
+  padding-right: 4px;
+  color: #888;
+}
+
+div.dashboard-nav a:hover  {
+  text-decoration: none;
+}
+
+div.dashboard-nav a.active {
+  border-bottom: 2px solid #bb4444;
+  color: #333;
+}
+</style>

src/main/twirl/helper/activities.scala.html

@@ -10,6 +10,7 @@
       @(activity.activityType match {
         case "open_issue"        => detailActivity(activity, "activity-issue.png")
         case "comment_issue"     => detailActivity(activity, "activity-comment.png")
+        case "comment_commit"    => detailActivity(activity, "activity-comment.png")
         case "close_issue"       => detailActivity(activity, "activity-issue-close.png")
         case "reopen_issue"      => detailActivity(activity, "activity-issue-reopen.png")
         case "open_pullreq"      => detailActivity(activity, "activity-merge.png")
@@ -62,7 +63,7 @@
 @detailActivity(activity: model.Activity, image: String) = {
   <div class="activity-icon-large"><img src="@assets/common/images/@image"/></div>
   <div class="activity-content">
-    <div class="muted small">@datetime(activity.activityDate)</div>
+    <div class="muted small">@helper.html.datetimeago(activity.activityDate)</div>
     <div class="strong">
       @avatar(activity.activityUserName, 16)
       @activityMessage(activity.message)
@@ -76,7 +77,7 @@
 @customActivity(activity: model.Activity, image: String)(additionalInfo: Any) = {
   <div class="activity-icon-large"><img src="@assets/common/images/@image"/></div>
   <div class="activity-content">
-    <div class="muted small">@datetime(activity.activityDate)</div>
+    <div class="muted small">@helper.html.datetimeago(activity.activityDate)</div>
     <div class="strong">
       @avatar(activity.activityUserName, 16)
       @activityMessage(activity.message)
@@ -91,7 +92,7 @@
     <div>
       @avatar(activity.activityUserName, 16)
       @activityMessage(activity.message)
-      <span class="muted small">@datetime(activity.activityDate)</span>
+      <span class="muted small">@helper.html.datetimeago(activity.activityDate)</span>
     </div>
   </div>
 }

src/main/twirl/helper/attached.scala.html

@@ -7,6 +7,7 @@
 @defining("(id=\")([\\w\\-]*)(\")".r.findFirstMatchIn(textarea.body).map(_.group(2))){ textareaId =>
 <script>
 $(function(){
+  try {
     $([$('#@textareaId').closest('div')[0], $('#@textareaId').next('div')[0]]).dropzone({
       url: '@path/upload/image/@owner/@repository',
       maxFilesize: 10,
@@ -19,6 +20,11 @@ $(function(){
         $(file.previewElement).prevAll('div.dz-preview').addBack().remove();
       }
     });
+  } catch(e) {
+    if (e.message !== "Dropzone already attached.") {
+      throw e;
+    }
+  }
 
   // Adjust clickable area width
   $('#@textareaId').next('div.clickable').css('width', ($('#@textareaId').width() + 8) + 'px');

src/main/twirl/helper/branchcontrol.scala.html

@@ -0,0 +1,62 @@
+@(branch: String  = "",
+  repository: service.RepositoryService.RepositoryInfo,
+  hasWritePermission: Boolean)(body: Html)(implicit context: app.Context)
+@import context._
+@import view.helpers._
+@helper.html.dropdown(
+  value = if(branch.length == 40) branch.substring(0, 10) else branch,
+  prefix = if(branch.length == 40) "tree" else if(repository.branchList.contains(branch)) "branch" else "tree",
+  mini = true
+) {
+  <li><div id="branch-control-title">Switch branches<button id="branch-control-close" class="pull-right">&times</button></div></li>
+  <li><input id="branch-control-input" type="text" placeholder="Find or create branch ..."/></li>
+  @body
+  @if(hasWritePermission) {
+    <li id="create-branch" style="display: none;">
+      <a><form action="@url(repository)/branches" method="post" style="margin: 0;">
+        <span class="new-branch-name">Create branch:&nbsp;<span class="new-branch"></span></span>
+        <br><span style="padding-left: 17px;">from&nbsp;'@branch'</span>
+        <input type="hidden" name="new">
+        <input type="hidden" name="from" value="@branch">
+      </form></a>
+    </li>
+  }
+}
+<script>
+  $(function(){
+    $('#branch-control-input').parent().click(function(e) {
+      e.stopPropagation();
+    });
+    $('#branch-control-close').click(function() {
+      $('[data-toggle="dropdown"]').parent().removeClass('open');
+    });
+    $('#branch-control-input').keyup(function() {
+      var inputVal = $('#branch-control-input').val();
+      $.each($('#branch-control-input').parent().parent().find('a'), function(index, elem) {
+        if (!inputVal || !elem.text.trim() || elem.text.trim().lastIndexOf(inputVal, 0) >= 0) {
+          $(elem).parent().show();
+        } else {
+          $(elem).parent().hide();
+        }
+      });
+      @if(hasWritePermission) {
+        if (inputVal) {
+          $('#create-branch').parent().find('li:last-child').show().find('.new-branch').text(inputVal);
+        } else {
+          $('#create-branch').parent().find('li:last-child').hide();
+        }
+      }
+    });
+    @if(hasWritePermission) {
+      $('#create-branch').click(function() {
+        $(this).find('input[name="new"]').val($('.dropdown-menu input').val())
+        $(this).find('form').submit()
+       });
+    }
+    $('.btn-group').click(function() {
+      $('#branch-control-input').val('');
+      $('.dropdown-menu li').show();
+      $('#create-branch').hide();
+    });
+  });
+</script>

src/main/twirl/helper/commitcomment.scala.html

@@ -0,0 +1,35 @@
+@(comment: model.CommitComment,
+  hasWritePermission: Boolean,
+  repository: service.RepositoryService.RepositoryInfo,
+  latestCommitId: Option[String] = None)(implicit context: app.Context)
+@import context._
+@import view.helpers._
+<div class="@if(comment.fileName.isDefined && (!latestCommitId.isDefined || latestCommitId.get == comment.commitId)){inline-comment}" @if(comment.fileName.isDefined){filename=@comment.fileName.get} @if(comment.newLine.isDefined){newline=@comment.newLine.get} @if(comment.oldLine.isDefined){oldline=@comment.oldLine.get}>
+  <div class="issue-avatar-image">@avatar(comment.commentedUserName, 48)</div>
+  <div class="box commit-comment-box commit-comment-@comment.commentId">
+    <div class="box-header-small">
+      @user(comment.commentedUserName, styleClass="username strong")
+        <span class="muted">
+          commented
+          @if(comment.pullRequest){
+            on this Pull Request
+          }else{
+            @if(comment.fileName.isDefined){
+              on @comment.fileName.get
+            }
+            in <a href="@path/@repository.owner/@repository.name/commit/@comment.commitId">@comment.commitId.substring(0, 7)</a>
+          }
+          @helper.html.datetimeago(comment.registeredDate)
+        </span>
+      <span class="pull-right">
+        @if(hasWritePermission || loginAccount.map(_.userName == comment.commentedUserName).getOrElse(false)){
+          <a href="#" data-comment-id="@comment.commentId"><i class="icon-pencil"></i></a>&nbsp;
+          <a href="#" data-comment-id="@comment.commentId"><i class="icon-remove-circle"></i></a>
+        }
+      </span>
+    </div>
+    <div class="box-content commit-commentContent-@comment.commentId">
+      @markdown(comment.content, repository, false, true, true, hasWritePermission)
+    </div>
+  </div>
+</div>

src/main/twirl/helper/copy.scala.html

@@ -6,6 +6,24 @@
 <script>
 // copy to clipboard
 (function() {
+  // Check flash availablibity
+  var flashAvailable = false;
+  try {
+    var flashObject = new ActiveXObject('ShockwaveFlash.ShockwaveFlash');
+    if(flashObject) flashAvailable = true;
+  } catch (e) {
+    if (navigator.mimeTypes
+        && navigator.mimeTypes['application/x-shockwave-flash'] != undefined
+        && navigator.mimeTypes['application/x-shockwave-flash'].enabledPlugin) {
+      flashAvailable = true;
+    }
+  }
+  // if flash is not available, remove the copy button.
+  if(!flashAvailable) {
+    $('#@id').remove();
+    return
+  }
+
   // Find ZeroClipboard.swf file URI from ZeroClipboard JavaScript file path.
   // NOTE(tanacasino) I think this way is wrong... but i don't know correct way.
   var moviePath = (function() {

src/main/twirl/helper/datetimeago.scala.html

@@ -0,0 +1,10 @@
+@(latestUpdatedDate: java.util.Date,
+  recentOnly: Boolean = true)
+@import view.helpers._
+<span data-toggle="tooltip" title="@datetime(latestUpdatedDate)">
+  @if(recentOnly){
+    @datetimeAgoRecentOnly(latestUpdatedDate)
+  }else{
+    @datetimeAgo(latestUpdatedDate)
+  }
+</span>

src/main/twirl/helper/diff.scala.html

@@ -2,16 +2,22 @@
   repository: service.RepositoryService.RepositoryInfo,
   newCommitId: Option[String],
   oldCommitId: Option[String],
- showIndex: Boolean)(implicit context: app.Context)
+  showIndex: Boolean,
+  issueId: Option[Int],
+  hasWritePermission: Boolean,
+  showLineNotes: Boolean)(implicit context: app.Context)
 @import context._
 @import view.helpers._
 @import org.eclipse.jgit.diff.DiffEntry.ChangeType
 @if(showIndex){
   <div>
     <div class="pull-right" style="margin-bottom: 10px;">
-      <input id="toggle-file-list" type="button" class="btn" value="Show file list"/>
+      <div class="btn-group" data-toggle="buttons-radio">
+        <input type="button" id="btn-unified" class="btn btn-default btn-small active" value="Unified">
+        <input type="button" id="btn-split" class="btn btn-default btn-small" value="Split">
       </div>
-    Showing @diffs.size changed @plural(diffs.size, "file")
+    </div>
+    Showing <a href="javascript:void(0);" id="toggle-file-list">@diffs.size changed @plural(diffs.size, "file")</a>
   </div>
   <ul id="commit-file-list" style="display: none;">
   @diffs.zipWithIndex.map { case (diff, i) =>
@@ -36,29 +42,36 @@
 }
 @diffs.zipWithIndex.map { case (diff, i) =>
   <a name="diff-@i"></a>
-  <table class="table table-bordered">
+  <table class="table table-bordered" commitId="@newCommitId" fileName="@diff.newPath">
     <tr>
-      <th style="font-weight: normal;" class="box-header">
+      <th style="font-weight: normal; line-height: 27px;" class="box-header">
         @if(diff.changeType == ChangeType.COPY || diff.changeType == ChangeType.RENAME){
-          @diff.oldPath -> @diff.newPath
+          <img src="@assets/common/images/diff_move.png"/> @diff.oldPath -> @diff.newPath
           @if(newCommitId.isDefined){
             <div class="pull-right align-right">
+              <label class="checkbox" style="display: inline-block;"><input type="checkbox" class="toggle-notes" checked><span>Show notes</span></label>
               <a href="@url(repository)/blob/@newCommitId.get/@diff.newPath" class="btn btn-small">View file @@ @newCommitId.get.substring(0, 10)</a>
             </div>
           }
         }
         @if(diff.changeType == ChangeType.ADD || diff.changeType == ChangeType.MODIFY){
-          @diff.newPath
+          @if(diff.changeType == ChangeType.ADD){
+            <img src="@assets/common/images/diff_add.png"/>
+          }else{
+            <img src="@assets/common/images/diff_edit.png"/>
+          } @diff.newPath
           @if(newCommitId.isDefined){
             <div class="pull-right align-right">
+              <label class="checkbox" style="display: inline-block;"><input type="checkbox" class="toggle-notes" checked><span>Show notes</span></label>
               <a href="@url(repository)/blob/@newCommitId.get/@diff.newPath" class="btn btn-small">View file @@ @newCommitId.get.substring(0, 10)</a>
             </div>
           }
         }
         @if(diff.changeType == ChangeType.DELETE){
-          @diff.oldPath
+          <img src="@assets/common/images/diff_delete.png"/> @diff.oldPath
           @if(oldCommitId.isDefined){
             <div class="pull-right align-right">
+              <label class="checkbox" style="display: inline-block;"><input type="checkbox" class="toggle-notes" checked><span>Show notes</span></label>
               <a href="@url(repository)/blob/@oldCommitId.get/@diff.oldPath" class="btn btn-small">View file @@ @oldCommitId.get.substring(0, 10)</a>
             </div>
           }
@@ -66,7 +79,7 @@
       </th>
     </tr>
     <tr>
-      <td>
+      <td style="padding: 0;">
         @if(diff.newContent != None || diff.oldContent != None){
           <div id="diffText-@i"></div>
           <textarea id="newText-@i" style="display: none;">@diff.newContent.getOrElse("")</textarea>
@@ -94,10 +107,143 @@ $(function(){
     });
   }
 
+  // Render diffs as unified mode initially
+  renderDiffs(1);
+
+  $('#btn-unified').click(function(){
+    $('.container-wide').removeClass('container-wide').addClass('container');
+    renderDiffs(1);
+  });
+
+  $('#btn-split').click(function(){
+    $('.container').removeClass('container').addClass('container-wide');
+    renderDiffs(0);
+  });
+
+  $('.toggle-notes').change(function() {
+    if (!$(this).prop('checked')) {
+      $(this).closest('table').find('.not-diff.inline-comment-form').remove();
+    }
+    $(this).closest('table').find('.not-diff').toggle();
+  });
+
+  function renderDiffs(viewType){
+    window.viewType = viewType;
     @diffs.zipWithIndex.map { case (diff, i) =>
       @if(diff.newContent != None || diff.oldContent != None){
         if($('#oldText-@i').length > 0){
-        diffUsingJS('oldText-@i', 'newText-@i', 'diffText-@i');
+          diffUsingJS('oldText-@i', 'newText-@i', 'diffText-@i', viewType);
+        }
+      }
+    }
+    @if(showLineNotes){
+      function getInlineContainer(where) {
+        if (viewType == 0) {
+          if (where === 'new') {
+            return $('<tr class="not-diff"><td colspan="2"></td><td colspan="2" class="comment-box-container"></td></tr>');
+          } else if (where === 'old') {
+            return $('<tr class="not-diff"><td colspan="2" class="comment-box-container"></td><td colspan="2"></td></tr>');
+          }
+        }
+        return $('<tr class="not-diff"><td colspan="3" class="comment-box-container"></td></tr>');
+      }
+      $('.inline-comment').each(function(i, v) {
+        var $v = $(v), filename = $v.attr('filename'),
+        oldline = $v.attr('oldline'), newline = $v.attr('newline');
+        if (typeof $('#show-notes')[0] !== 'undefined' && !$('#show-notes')[0].checked) {
+          $(this).hide();
+        }
+        var tmp;
+        var diff;
+        if (typeof oldline !== 'undefined') {
+          if (typeof newline !== 'undefined') {
+            tmp = getInlineContainer();
+          } else {
+            tmp = getInlineContainer('old');
+          }
+          tmp.children('td:first').html($(this).clone().show());
+          diff = $('table[filename="' + filename + '"]');
+          diff.find('table.diff').find('.oldline[line-number=' + oldline  + ']')
+          .parent().nextAll(':not(.not-diff):first').before(tmp);
+        } else {
+          tmp = getInlineContainer('new');
+          tmp.children('td:last').html($(this).clone().show());
+          diff = $('table[filename="' + filename + '"]');
+          diff.find('table.diff').find('.newline[line-number=' + newline  + ']')
+          .parent().nextAll(':not(.not-diff):first').before(tmp);
+        }
+        if (!diff.find('.toggle-notes').prop('checked')) {
+          tmp.hide();
+        }
+      });
+      @if(hasWritePermission) {
+        $('table.diff td').hover(
+          function() {
+            $(this).find('b').css('display', 'inline-block');
+          },
+          function() {
+            $(this).find('b').css('display', 'none');
+          }
+        );
+        $('table.diff th').hover(
+          function() {
+            $(this).nextAll().find('b').first().css('display', 'inline-block');
+          },
+          function() {
+            $(this).nextAll().find('b').first().css('display', 'none');
+          }
+        );
+        $('.add-comment').click(function() {
+          var $this = $(this),
+          $tr = $this.closest('tr'),
+          $check = $this.closest('table:not(.diff)').find('.toggle-notes');
+          if (!$check.prop('checked')) {
+            $check.prop('checked', true).trigger('change');
+          }
+          if (!$tr.nextAll(':not(.not-diff):first').prev().hasClass('inline-comment-form')) {
+            var commitId = $this.closest('.table-bordered').attr('commitId'),
+            fileName = $this.closest('.table-bordered').attr('fileName'),
+            oldLineNumber, newLineNumber,
+            url = '@url(repository)/commit/' + commitId + '/comment/_form?fileName=' + fileName@issueId.map { id => + '&issueId=@id' };
+            if (viewType == 0) {
+              oldLineNumber = $this.parent().prev('.oldline').attr('line-number');
+              newLineNumber = $this.parent().prev('.newline').attr('line-number');
+            } else {
+              oldLineNumber = $this.parent().prevAll('.oldline').attr('line-number');
+              newLineNumber = $this.parent().prevAll('.newline').attr('line-number');
+            }
+            if (!isNaN(oldLineNumber) && oldLineNumber) {
+              url += ('&oldLineNumber=' + oldLineNumber)
+            }
+            if (!isNaN(newLineNumber) && newLineNumber) {
+              url += ('&newLineNumber=' + newLineNumber)
+            }
+            $.get(
+              url,
+              {
+                dataType : 'html'
+              },
+              function(responseContent) {
+                $this.hide();
+                var tmp;
+                if (!isNaN(oldLineNumber) && oldLineNumber) {
+                  if (!isNaN(newLineNumber) && newLineNumber) {
+                    tmp = getInlineContainer();
+                  } else {
+                    tmp = getInlineContainer('old');
+                  }
+                } else {
+                  tmp = getInlineContainer('new');
+                }
+                tmp.addClass('inline-comment-form').children('.comment-box-container').html(responseContent);
+                $tr.nextAll(':not(.not-diff):first').before(tmp);
+              }
+            );
+          }
+        });
+        $('table.diff').on('click', '.btn-default', function() {
+          $(this).closest('.inline-comment-form').remove();
+        });
       }
     }
   }

src/main/twirl/helper/dropdown.scala.html

@@ -1,6 +1,13 @@
-@(value: String = "", prefix: String = "", mini: Boolean = true, style: String = "", right: Boolean = false)(body: Html)
-<div class="btn-group"@if(style.nonEmpty){ style="@style"}>
-  <button class="btn dropdown-toggle@if(mini){ btn-mini} else { btn-small}" data-toggle="dropdown">
+@(value : String  = "",
+  prefix: String  = "",
+  mini  : Boolean = true,
+  style : String  = "",
+  right : Boolean = false,
+  flat  : Boolean = false)(body: Html)
+<div class="btn-group" @if(style.nonEmpty){style="@style"}>
+  <button
+      @if(flat){style="border: none; background-color: #eee;"}
+      class="dropdown-toggle @if(!flat){btn} else {flat} @if(mini){btn-mini} else {btn-small}" data-toggle="dropdown">
     @if(value.isEmpty){
       <i class="icon-cog"></i>
     } else {

src/main/twirl/helper/error.scala.html

@@ -0,0 +1,7 @@
+@(error: Option[Any])
+@if(error.isDefined){
+<div class='alert alert-danger'>
+    <button type="button" class="close" data-dismiss="alert">&times;</button>
+    @error
+</div>
+}

src/main/twirl/helper/forkrepository.scala.html

@@ -0,0 +1,18 @@
+@(repository: service.RepositoryService.RepositoryInfo,
+  groupAndPerm: Map[String, Boolean])(implicit context: app.Context)
+@import context._
+@import view.helpers._
+  <h2 class="facebox-header">Where should we fork this repository?</h2>
+  <form action="@url(repository)/fork" id="fork" method="post">
+    <div class="owner-select-grid">
+      <div class="owner-select-target js-fork-owner-select-target enabled">@avatar(loginAccount.get.userName, 100)<span class="owner css-truncate" title="@@@loginAccount.get.userName">@@@loginAccount.get.userName</span></div>
+    @for((groupName, isManager) <- groupAndPerm) {
+      @if(isManager) {
+      <div class="owner-select-target js-fork-owner-select-target enabled">@avatar(groupName, 100)<span class="owner css-truncate" title="@@@groupName">@@@groupName</span></div>
+      } else {
+      <div title="You don't have permission to fork here."  class="owner-select-target js-fork-owner-select-target disabled">@avatar(groupName, 100)<span class="owner css-truncate" title="@@@groupName">@@@groupName</span></div>
+      }
+    }
+    </div>
+    <input id="account" name="account" type="hidden" />
+</form>

src/main/twirl/helper/information.scala.html

@@ -1,7 +1,7 @@
 @(info: Option[Any])
 @if(info.isDefined){
   <div class="alert alert-info">
-    <button type="button" class="close" data-dismiss="alert">×</button>
+    <button type="button" class="close" data-dismiss="alert">&times;</button>
     @info
   </div>
 }

src/main/twirl/helper/preview.scala.html

@@ -1,17 +1,17 @@
-@(repository: service.RepositoryService.RepositoryInfo, content: String, enableWikiLink: Boolean, enableRefsLink: Boolean,
-  style: String = "", placeholder: String = "Leave a comment", elastic: Boolean = false)(implicit context: app.Context)
+@(repository: service.RepositoryService.RepositoryInfo, content: String, enableWikiLink: Boolean, enableRefsLink: Boolean, enableTaskList: Boolean, hasWritePermission: Boolean,
+  style: String = "", placeholder: String = "Leave a comment", elastic: Boolean = false, uid: Long = new java.util.Date().getTime())(implicit context: app.Context)
 @import context._
 @import view.helpers._
 <div class="tabbable">
   <ul class="nav nav-tabs" style="height: 37px;">
-    <li class="active"><a href="#tab1" data-toggle="tab">Write</a></li>
-    <li><a href="#tab2" data-toggle="tab" id="preview">Preview</a></li>
+    <li class="active"><a href="#tab@uid" data-toggle="tab">Write</a></li>
+    <li><a href="#tab@(uid+1)" data-toggle="tab" id="preview@uid">Preview</a></li>
   </ul>
   <div class="tab-content">
-    <div class="tab-pane active" id="tab1">
+    <div class="tab-pane active" id="tab@uid">
       <span id="error-content" class="error"></span>
       @textarea = {
-        <textarea id="content" name="content"@if(style.nonEmpty){ style="@style"} placeholder="@placeholder">@content</textarea>
+        <textarea id="content@uid" name="content"@if(style.nonEmpty){ style="@style"} placeholder="@placeholder">@content</textarea>
       }
       @if(enableWikiLink){
         @textarea
@@ -19,8 +19,8 @@
         @helper.html.attached(repository.owner, repository.name)(textarea)
       }
     </div>
-    <div class="tab-pane" id="tab2">
-      <div class="markdown-body" id="preview-area">
+    <div class="tab-pane" id="tab@(uid+1)">
+      <div class="markdown-body" id="preview-area@uid">
       </div>
     </div>
   </div>
@@ -30,17 +30,18 @@
 <script>
 $(function(){
   @if(elastic){
-    $('#content').elastic();
+    $('#content@uid').elastic();
   }
 
-  $('#preview').click(function(){
-    $('#preview-area').html('<img src="@assets/common/images/indicator.gif"> Previewing...');
+  $('#preview@uid').click(function(){
+    $('#preview-area@uid').html('<img src="@assets/common/images/indicator.gif"> Previewing...');
     $.post('@url(repository)/_preview', {
-      content        : $('#content').val(),
+      content        : $('#content@uid').val(),
       enableWikiLink : @enableWikiLink,
-      enableRefsLink : @enableRefsLink
+      enableRefsLink : @enableRefsLink,
+      enableTaskList : @enableTaskList
     }, function(data){
-      $('#preview-area').html(data);
+      $('#preview-area@uid').html(data);
       prettyPrint();
     });
   });

src/main/twirl/index.scala.html

@@ -4,13 +4,23 @@
 @import context._
 @import view.helpers._
 @main("GitBucket"){
-  <div class="container">
   @dashboard.html.tab()
+  <div class="container">
     <div class="row-fluid">
       <div class="span8">
+        <div class="pull-right">
+          <a href="@path/activities.atom"><img src="@assets/common/images/feed.png" alt="activities"></a>
+        </div>
         @helper.html.activities(activities)
       </div>
+
       <div class="span4">
+        @settings.information.map { information =>
+          <div class="alert alert-info" style="background-color: white; color: #555; border-color: #4183c4; font-size: small; line-height: 120%;">
+            <button type="button" class="close" data-dismiss="alert">&times;</button>
+            @Html(information)
+          </div>
+        }
         @if(loginAccount.isEmpty){
           @signinform(settings)
         } else {

src/main/twirl/issues/commentform.scala.html

@@ -5,11 +5,12 @@
 @import context._
 @import view.helpers._
 @if(loginAccount.isDefined){
+  <hr/><br/>
   <form method="POST" validate="true">
     <div class="issue-avatar-image">@avatar(loginAccount.get.userName, 48)</div>
       <div class="box issue-comment-box">
       <div class="box-content">
-        @helper.html.preview(repository, "", false, true, "width: 635px; height: 100px; max-height: 150px;", elastic = true)
+        @helper.html.preview(repository, "", false, true, true, hasWritePermission, "width: 635px; height: 100px; max-height: 150px;", elastic = true)
       </div>
     </div>
     <div class="pull-right">

src/main/twirl/issues/commentlist.scala.html

@@ -1,26 +1,45 @@
-@(issue: model.Issue,
-  comments: List[model.IssueComment],
+@(issue: Option[model.Issue],
+  comments: List[model.Comment],
   hasWritePermission: Boolean,
   repository: service.RepositoryService.RepositoryInfo,
   pullreq: Option[model.PullRequest] = None)(implicit context: app.Context)
 @import context._
 @import view.helpers._
-@comments.map { comment =>
+@if(issue.isDefined){
+  <div class="issue-avatar-image">@avatar(issue.get.openedUserName, 48)</div>
+  <div class="box issue-comment-box">
+    <div class="box-header-small">
+      @user(issue.get.openedUserName, styleClass="username strong") <span class="muted">commented @helper.html.datetimeago(issue.get.registeredDate)</span>
+      <span class="pull-right">
+        @if(hasWritePermission || loginAccount.map(_.userName == issue.get.openedUserName).getOrElse(false)){
+          <a href="#" data-issue-id="@issue.get.issueId"><i class="icon-pencil"></i></a>
+        }
+      </span>
+    </div>
+    <div class="box-content issue-content" id="issueContent">
+      @markdown(issue.get.content getOrElse "No description provided.", repository, false, true, true, hasWritePermission)
+    </div>
+  </div>
+}
+
+@comments.map {
+  case comment: model.IssueComment => {
     @if(comment.action != "close" && comment.action != "reopen" && comment.action != "delete_branch"){
       <div class="issue-avatar-image">@avatar(comment.commentedUserName, 48)</div>
       <div class="box issue-comment-box" id="comment-@comment.commentId">
         <div class="box-header-small">
-        <i class="icon-comment"></i>
           @user(comment.commentedUserName, styleClass="username strong")
+          <span class="muted">
             @if(comment.action == "comment"){
               commented
             } else {
               @if(pullreq.isEmpty){ referenced the issue } else { referenced the pull request }
             }
+            @helper.html.datetimeago(comment.registeredDate)
+          </span>
           <span class="pull-right">
-          @datetime(comment.registeredDate)
-          @if(comment.action != "commit" && comment.action != "merge" && comment.action != "refer" &&
-                (hasWritePermission || loginAccount.map(_.userName == comment.commentedUserName).getOrElse(false))){
+            @if(comment.action != "commit" && comment.action != "merge" && comment.action != "refer"
+                  && (hasWritePermission || loginAccount.map(_.userName == comment.commentedUserName).getOrElse(false))){
               <a href="#" data-comment-id="@comment.commentId"><i class="icon-pencil"></i></a>&nbsp;
               <a href="#" data-comment-id="@comment.commentId"><i class="icon-remove-circle"></i></a>
             }
@@ -30,7 +49,7 @@
           @if(comment.action == "commit" && comment.content.split(" ").last.matches("[a-f0-9]{40}")){
             @defining(comment.content.substring(comment.content.length - 40)){ id =>
               <div class="pull-right"><a href="@path/@repository.owner/@repository.name/commit/@id" class="monospace">@id.substring(0, 7)</a></div>
-            @markdown(comment.content.substring(0, comment.content.length - 41), repository, false, true)
+              @markdown(comment.content.substring(0, comment.content.length - 41), repository, false, true, true, hasWritePermission)
             }
           } else {
             @if(comment.action == "refer"){
@@ -38,7 +57,7 @@
                 <strong><a href="@path/@repository.owner/@repository.name/issues/@issueId">Issue #@issueId</a>: @rest.mkString(":")</strong>
               }
             } else {
-            @markdown(comment.content, repository, false, true)
+              @markdown(comment.content, repository, false, true, true, hasWritePermission)
             }
           }
         </div>
@@ -52,19 +71,19 @@
         @if(pullreq.get.requestUserName == repository.owner){
           <span class="label label-info monospace">@pullreq.map(_.branch)</span> from <span class="label label-info monospace">@pullreq.map(_.requestBranch)</span>
         } else {
-        <span class="label label-info monospace">@pullreq.map(_.userName):@pullreq.map(_.branch)</span> to <span class="label label-info monospace">@pullreq.map(_.requestUserName):@pullreq.map(_.requestBranch)</span>
+          <span class="label label-info monospace">@pullreq.map(_.userName):@pullreq.map(_.branch)</span> from <span class="label label-info monospace">@pullreq.map(_.requestUserName):@pullreq.map(_.requestBranch)</span>
         }
-      @datetime(comment.registeredDate)
+        @helper.html.datetimeago(comment.registeredDate)
       </div>
     }
     @if(comment.action == "close" || comment.action == "close_comment"){
       <div class="small issue-comment-action">
         <span class="label label-important">Closed</span>
         @avatar(comment.commentedUserName, 20)
-      @if(issue.isPullRequest){
-        @user(comment.commentedUserName, styleClass="username strong") closed the pull request @datetime(comment.registeredDate)
+        @if(issue.isDefined && issue.get.isPullRequest){
+          @user(comment.commentedUserName, styleClass="username strong") closed the pull request @helper.html.datetimeago(comment.registeredDate)
         } else {
-        @user(comment.commentedUserName, styleClass="username strong") closed the issue @datetime(comment.registeredDate)
+          @user(comment.commentedUserName, styleClass="username strong") closed the issue @helper.html.datetimeago(comment.registeredDate)
         }
       </div>
     }
@@ -72,27 +91,41 @@
       <div class="small issue-comment-action">
         <span class="label label-success">Reopened</span>
         @avatar(comment.commentedUserName, 20)
-      @user(comment.commentedUserName, styleClass="username strong") reopened the issue @datetime(comment.registeredDate)
+        @user(comment.commentedUserName, styleClass="username strong") reopened the issue @helper.html.datetimeago(comment.registeredDate)
       </div>
     }
     @if(comment.action == "delete_branch"){
       <div class="small issue-comment-action">
         <span class="label">Deleted</span>
         @avatar(comment.commentedUserName, 20)
-      @user(comment.commentedUserName, styleClass="username strong") deleted the <span class="label label-info monospace">@pullreq.map(_.requestBranch)</span> branch @datetime(comment.registeredDate)
+        @user(comment.commentedUserName, styleClass="username strong") deleted the <span class="label label-info monospace">@pullreq.map(_.requestBranch)</span> branch @helper.html.datetimeago(comment.registeredDate)
       </div>
     }
+  }
+  case comment: model.CommitComment => {
+    @helper.html.commitcomment(comment, hasWritePermission, repository, pullreq.map(_.commitIdTo))
+  }
 }
 <script>
 $(function(){
-  $('i.icon-pencil').click(function(){
+@if(issue.isDefined){
+  $('.issue-comment-box i.icon-pencil').click(function(){
     var id  = $(this).closest('a').data('comment-id');
-    $.get('@url(repository)/issue_comments/_data/' + id,
+    var url = '@url(repository)/issue_comments/_data/' + id;
+    var $content = $('#commentContent-' + id);
+
+    if(!id){
+      id  = $(this).closest('a').data('issue-id');
+      url = '@url(repository)/issues/_data/' + id;
+      $content = $('#issueContent');
+    }
+
+    $.get(url,
     {
       dataType : 'html'
     },
     function(data){
-      $('#commentContent-' + id).empty().html(data);
+      $content.empty().html(data);
     });
     return false;
   });
@@ -109,5 +142,122 @@ $(function(){
     }
     return false;
   });
+}
+  $(document).on('click', '.commit-comment-box i.icon-pencil', function(){
+    var id  = $(this).closest('a').data('comment-id');
+    var url = '@url(repository)/commit_comments/_data/' + id;
+    var $content = $('.commit-commentContent-' + id, $(this).closest('.box'));
+
+    $.get(url,
+    {
+      dataType : 'html'
+    },
+    function(data){
+      $content.empty().html(data);
+    });
+    return false;
+  });
+  $(document).on('click', '.commit-comment-box i.icon-remove-circle', function(){
+    if(confirm('Are you sure you want to delete this?')) {
+      var id = $(this).closest('a').data('comment-id');
+      $.post('@url(repository)/commit_comments/delete/' + id,
+      function(data){
+        if(data > 0) {
+          $('.commit-comment-' + id).closest('.not-diff').remove();
+          $('.commit-comment-' + id).closest('.inline-comment').remove();
+        }
+      });
+    }
+    return false;
+  });
+
+  var extractMarkdown = function(data){
+    $('body').append('<div id="tmp"></div>');
+    $('#tmp').html(data);
+    var markdown = $('#tmp textarea').val();
+    $('#tmp').remove();
+    return markdown;
+  };
+
+  var replaceTaskList = function(issueContentHtml, checkboxes) {
+    var ss = [],
+        markdown = extractMarkdown(issueContentHtml),
+        xs = markdown.split(/- \[[x| ]\]/g);
+    for (var i=0; i<xs.length; i++) {
+      ss.push(xs[i]);
+      if (checkboxes.eq(i).prop('checked')) ss.push('- [x]');
+      else ss.push('- [ ]');
+    }
+    ss.pop();
+    return ss.join('');
+  };
+
+  $('div[class*=commit-commentContent-]').on('click', ':checkbox', function(ev){
+    var $commentContent = $(ev.target).parents('div[class*=commit-commentContent-]'),
+        commentId = $commentContent.attr('class').match(/commit-commentContent-.+/)[0].replace(/commit-commentContent-/, ''),
+        checkboxes = $commentContent.find(':checkbox');
+    $.get('@url(repository)/commit_comments/_data/' + commentId,
+      {
+        dataType : 'html'
+      },
+      function(responseContent){
+        $.ajax({
+          url: '@url(repository)/commit_comments/edit/' + commentId,
+          type: 'POST',
+          data: {
+            issueId : 0,
+            content : replaceTaskList(responseContent, checkboxes)
+          },
+          success: function(data) {
+            $('.commit-commentContent-' + commentId).html(data.content);
+          }
+        });
+      }
+    );
+  });
+
+  @if(issue.isDefined){
+  $('#issueContent').on('click', ':checkbox', function(ev){
+    var checkboxes = $('#issueContent :checkbox');
+    $.get('@url(repository)/issues/_data/@issue.get.issueId',
+      {
+        dataType : 'html'
+      },
+      function(responseContent){
+        $.ajax({
+          url: '@url(repository)/issues/edit/@issue.get.issueId',
+          type: 'POST',
+          data: {
+            title   : $('#issueTitle').text(),
+            content : replaceTaskList(responseContent, checkboxes)
+          }
+        });
+      }
+    );
+  });
+
+  $('div[id^=commentContent-]').on('click', ':checkbox', function(ev){
+    var $commentContent = $(ev.target).parents('div[id^=commentContent-]'),
+        commentId = $commentContent.attr('id').replace(/commentContent-/, ''),
+        checkboxes = $commentContent.find(':checkbox');
+    $.get('@url(repository)/issue_comments/_data/' + commentId,
+      {
+        dataType : 'html'
+      },
+      function(responseContent){
+        $.ajax({
+          url: '@url(repository)/issue_comments/edit/' + commentId,
+          type: 'POST',
+          data: {
+            issueId : 0,
+            content : replaceTaskList(responseContent, checkboxes)
+          }
+        });
+      }
+    );
+  });
+
+  }
+
 });
 </script>

src/main/twirl/issues/create.scala.html

@@ -7,7 +7,8 @@
 @import view.helpers._
 @html.main(s"New Issue - ${repository.owner}/${repository.name}", Some(repository)){
   @html.menu("issues", repository){
-    @tab("", true, repository)
+    @navigation("issues", false, repository)
+    <br/><br/><hr style="margin-bottom: 10px;">
     <form action="@url(repository)/issues/new" method="POST" validate="true">
     <div class="row-fluid">
       <div class="span9">
@@ -32,7 +33,7 @@
                 @if(hasWritePermission){
                   <input type="hidden" name="milestoneId" value=""/>
                   @helper.html.dropdown() {
-                    <li><a href="javascript:void(0);" class="milestone" data-id=""><i class="icon-remove-circle"></i> No milestone</a></li>
+                    <li><a href="javascript:void(0);" class="milestone" data-id=""><i class="icon-remove-circle"></i> Clear this milestone</a></li>
                     @milestones.filter(_.closedDate.isEmpty).map { milestone =>
                       <li>
                         <a href="javascript:void(0);" class="milestone" data-id="@milestone.milestoneId" data-title="@milestone.title">
@@ -40,9 +41,9 @@
                           <div class="small" style="padding-left: 20px;">
                             @milestone.dueDate.map { dueDate =>
                               @if(isPast(dueDate)){
-                                <img src="@assets/common/images/alert_mono.png"/>Due in @date(dueDate)
+                                <img src="@assets/common/images/alert.png"/><span class="milestone-alert">Due by @date(dueDate)</span>
                               } else {
-                                <span class="muted">Due in @date(dueDate)</span>
+                                <span class="muted">Due by @date(dueDate)</span>
                               }
                             }.getOrElse {
                               <span class="muted">No due date</span>
@@ -56,7 +57,7 @@
               </div>
             </div>
             <hr>
-            @helper.html.preview(repository, "", false, true, "width: 565px; height: 200px; max-height: 250px;", elastic = true)
+            @helper.html.preview(repository, "", false, true, true, hasWritePermission, "width: 565px; height: 200px; max-height: 250px;", elastic = true)
           </div>
         </div>
         <div class="pull-right">
@@ -65,7 +66,7 @@
       </div>
       <div class="span3">
         @if(hasWritePermission){
-          <span class="strong">Add Labels</span>
+          <span class="strong">Labels</span>
           <div>
             <div id="label-list">
               <ul class="label-list nav nav-pills nav-stacked">
@@ -112,7 +113,7 @@ $(function(){
     if(milestoneId == ''){
       $('#label-milestone').text('No milestone');
     } else {
-      $('#label-milestone').html($('<span>').append('Milestone: ').append($('<span class="strong">').text(title)));
+      $('#label-milestone').html($('<span class="strong">').text(title));
       $('a.milestone[data-id=' + milestoneId + '] i').attr('class', 'icon-ok');
     }
     $('input[name=milestoneId]').val(milestoneId);