Update README.md for 2.7 release

Add SSH clone url option when enabled SSH access

.travis.yml

@@ -0,0 +1,3 @@
+language: scala
+scala:
+  - 2.11.2

README.md

@@ -1,12 +1,15 @@
-GitBucket
+GitBucket [![Gitter chat](https://badges.gitter.im/takezoe/gitbucket.png)](https://gitter.im/takezoe/gitbucket) [![Build Status](https://travis-ci.org/takezoe/gitbucket.svg?branch=master)](https://travis-ci.org/takezoe/gitbucket)
 =========
 
 GitBucket is the easily installable Github clone written with Scala.
 
+
+Features
+--------
 The current version of GitBucket provides a basic features below:
 
-- Public / Private Git repository (http access only)
+- Public / Private Git repository (http and ssh access)
-- Repository viewer (some advanced features such as online file editing are not implemented)
+- Repository viewer and online file editing
 - Repository search (Code and Issues)
 - Wiki
 - Issues
@@ -20,10 +23,8 @@ The current version of GitBucket provides a basic features below:
 
 Following features are not implemented, but we will make them in the future release!
 
-- File editing in repository viewer
-- Comment for the changeset
 - Network graph
-- Statics
+- Statistics
 - Watch / Star
 
 If you want to try the development version of GitBucket, see the documentation for developers at [Wiki](https://github.com/takezoe/gitbucket/wiki).
@@ -35,6 +36,8 @@ Installation
 2. Deploy it to the Servlet 3.0 container such as Tomcat 7.x, Jetty 8.x, GlassFish 3.x or higher.
 3. Access **http://[hostname]:[port]/gitbucket/** using your web browser.
 
+If you are using Gitbucket behind a webserver please make sure you have increased the **client_max_body_size** (on nignx)
+
 The default administrator account is **root** and password is **root**.
 
 or you can start GitBucket by `java -jar gitbucket.war` without servlet container. In this case, GitBucket URL is **http://[hostname]:8080/**. You can specify following options.
@@ -49,6 +52,24 @@ To upgrade GitBucket, only replace gitbucket.war. All GitBucket data is stored i
 For Installation on Windows Server with IIS see [this wiki page](https://github.com/takezoe/gitbucket/wiki/Installation-on-IIS-and-Helicontech-Zoo)
 
 ### Mac OS X
+#### Installing Via Homebrew
+
+    $ brew install gitbucket
+    ==> Downloading https://github.com/takezoe/gitbucket/releases/download/1.10/gitbucket.war
+    ######################################################################## 100.0%
+    ==> Caveats
+    Note: When using launchctl the port will be 8080.
+
+    To have launchd start gitbucket at login:
+        ln -sfv /usr/local/opt/gitbucket/*.plist ~/Library/LaunchAgents
+    Then to load gitbucket now:
+        launchctl load ~/Library/LaunchAgents/homebrew.mxcl.gitbucket.plist
+    Or, if you don't want/need launchctl, you can just run:
+        java -jar /usr/local/opt/gitbucket/libexec/gitbucket.war
+    ==> Summary
+    /usr/local/Cellar/gitbucket/1.10: 3 files, 42M, built in 11 seconds
+
+#### Manual Installation
 On OS X, copy the [gitbucket.plist](https://raw.github.com/takezoe/gitbucket/master/contrib/macosx/gitbucket.plist) file to `~/Library/LaunchAgents/`
 
 Run the following commands in `Terminal` to
@@ -58,6 +79,80 @@ Run the following commands in `Terminal` to
 
 Release Notes
 --------
+### 2.7 - 29 Dec 2014
+- Comment for commit and diff
+- Fix security issue in markdown rendering
+- Some bug fix and improvements
+
+### 2.6 - 24 Nov 2014
+- Search box at issues and pull requests
+- Information from administrator
+- Pull request UI has been updated
+- Move to TravisCI from Buildhive
+- Some bug fix and improvements
+
+### 2.5 - 4 Nov 2014
+- New Dashboard
+- Change datetime format
+- Create branch from Web UI
+- Task list in Markdown
+- Some bug fix and improvements
+
+### 2.4.1 - 6 Oct 2014
+- Bug fix
+
+### 2.4 - 6 Oct 2014
+- New UI is applied to Issues and Pull requests
+- Side-by-side diff is available
+- Fix relative path problem in Markdown links and images
+- Plugin System is disabled in default
+- Some bug fix and improvements
+
+### 2.3 - 1 Sep 2014
+- Scala based plugin system
+- Embedded Jetty war extraction directory moved to `GITBUCKET_HOME/tmp`
+- Some bug fix and improvements
+
+### 2.2.1 - 5 Aug 2014
+- Bug fix
+
+### 2.2 - 4 Aug 2014
+- Plug-in system is available
+- Move to Scala 2.11, Scalatra 2.3 and Slick 2.1
+- tar.gz export for repository contents
+- LDAP authentication improvement (mail address became optional)
+- Show news feed of a private repository to members
+- Some bug fix and improvements
+
+### 2.1 - 6 Jul 2014
+- Upgrade to Slick 2.0 from 1.9
+- Base part of the plug-in system is merged
+- Many bug fix and improvements
+
+### 2.0 - 31 May 2014
+- Modern Github UI
+- Preview in AceEditor
+- Select lines by clicking line number in blob view
+
+### 1.13 - 29 Apr 2014
+- Direct file editing in the repository viewer using AceEditor
+- File attachment for issues
+- Atom feed of user activity
+- Fix some bugs
+
+### 1.12 - 29 Mar 2014
+- SSH repository access is available
+- Allow users can create and management their groups
+- Git submodule support
+- Close issues via commit messages
+- Show repository description below the name on repository page
+- Fix presentation of the source viewer
+- Upgrade to sbt 0.13
+- Fix some bugs
+
+### 1.11.1 - 06 Mar 2014
+- Bug fix
+
 ### 1.11 - 01 Mar 2014
 - Base URL for redirection, notification and repository URL box is configurable
 - Remove ```--https``` option because it's possible to substitute in the base url

build.xml

@@ -4,7 +4,7 @@
   <property name="target.dir" value="target"/>
   <property name="embed.classes.dir" value="${target.dir}/embed-classes"/>
   <property name="jetty.dir" value="embed-jetty"/>
-  <property name="scala.version" value="2.10"/>
+  <property name="scala.version" value="2.11"/>
   <property name="gitbucket.version" value="0.0.1"/>
   <property name="jetty.version" value="8.1.8.v20121106"/>
   <property name="servlet.version" value="3.0.0.v201112011016"/>
@@ -50,8 +50,8 @@
   </target>
 
   <target name="rename" depends="embed">
-    <rename src="${target.dir}/scala-${scala.version}/gitbucket_${scala.version}-${gitbucket.version}.war"
+    <move file="${target.dir}/scala-${scala.version}/gitbucket_${scala.version}-${gitbucket.version}.war"
-            dest="${target.dir}/scala-${scala.version}/gitbucket.war"/>
+            tofile="${target.dir}/scala-${scala.version}/gitbucket.war"/>
   </target>
 
   <target name="all" depends="rename">

contrib/README.md

@@ -0,0 +1,13 @@
+# Contrib Notes #
+
+The configuration script adapts according to the OS.
+The `linux` directory contains scripts for Ubuntu and RedHat.
+The Mac scripts have been folded in as well.
+Common scripts are in this directory.
+
+This version of scripts has so far only been tested on Ubuntu and Mac. Someone else will have to test on RedHat.
+
+To run:
+1. Edit `gitbucket.conf` to suit.
+2. Type: `install`
+

contrib/gitbucket.conf

@@ -0,0 +1,62 @@
+# Configuration section is below. Ignore this part
+
+function isUbuntu {
+  if [ -f /etc/lsb-release ]; then
+    grep -i ubuntu /etc/lsb-release | head -n 1 | cut -d \  -f 1 | cut -d = -f 2
+  fi
+}
+
+function isRedHat {
+  if [ -d "/etc/rc.d/init.d" ]; then echo yes; fi
+}
+
+function isMac {
+  if [[ "$(uname -a | cut -d \  -f 1 )" == "Darwin" ]]; then echo yes; fi
+}
+
+# 
+# Configuration section start
+#
+
+# Bind host
+GITBUCKET_HOST=0.0.0.0
+
+# Other Java option
+GITBUCKET_JVM_OPTS=-Dmail.smtp.starttls.enable=true
+
+# Data directory, holds repositories
+GITBUCKET_HOME=/var/lib/gitbucket
+
+GITBUCKET_LOG_DIR=/var/log/gitbucket
+
+# Server port
+GITBUCKET_PORT=8080
+
+# URL prefix for the GitBucket page (http://<host>:<port>/<prefix>/)
+GITBUCKET_PREFIX=
+
+# Directory where GitBucket is installed
+# Configuration is stored here:
+GITBUCKET_DIR=/usr/share/gitbucket
+GITBUCKET_WAR_DIR=$GITBUCKET_DIR/lib
+
+# Path to the WAR file
+GITBUCKET_WAR_FILE=$GITBUCKET_WAR_DIR/gitbucket.war
+
+# GitBucket version to fetch when installing
+GITBUCKET_VERSION=2.1
+
+#
+# End of configuration section. Ignore this part
+#
+if [ `isUbuntu` ]; then
+  GITBUCKET_SERVICE=/etc/init.d/gitbucket
+elif [ `isRedHat` ]; then
+  GITBUCKET_SERVICE=/etc/rc.d/init.d
+elif [ `isMac` ]; then
+  GITBUCKET_SERVICE=/Library/StartupItems/GitBucket/GitBucket
+else
+  echo "Don't know how to install onto this OS"
+  exit -2
+fi
+

contrib/gitbucket.init

@@ -1,6 +1,8 @@
 #!/bin/bash
 #
-# /etc/rc.d/init.d/gitbucket
+# RedHat: /etc/rc.d/init.d/gitbucket
+# Ubuntu: /etc/init.d/gitbucket
+# Mac OS/X: /Library/StartupItems/GitBucket
 #
 # Starts the GitBucket server
 #
@@ -8,28 +10,44 @@
 # description: Run GitBucket server
 # processname: java
 
-# Source function library
+set -e
-. /etc/rc.d/init.d/functions
+
+[ -f /etc/rc.d/init.d/functions ] && source /etc/rc.d/init.d/functions  # RedHat
+[ -f /etc/rc.common ] && source /etc/rc.common # Mac OS/X
 
 # Default values
 GITBUCKET_HOME=/var/lib/gitbucket
 GITBUCKET_WAR_FILE=/usr/share/gitbucket/lib/gitbucket.war
 
 # Pull in cq settings
-[ -f /etc/sysconfig/gitbucket ] && . /etc/sysconfig/gitbucket
+[ -f /etc/sysconfig/gitbucket ] && source /etc/sysconfig/gitbucket # RedHat
+[ -f gitbucket.conf ] && source gitbucket.conf  # For all systems
 
 # Location of the log and PID file
-LOG_FILE=/var/log/gitbucket/run.log
+LOG_FILE=$GITBUCKET_LOG_DIR/run.log
 PID_FILE=/var/run/gitbucket.pid
 
-# Default return value
+RED='\033[1m\E[37;41m'
-RETVAL=0
+GREEN='\033[1m\E[37;42m'
+OFF='\E[0m'
 
+if [ -z "$(which success)" ]; then
+	function success {
+	  printf "%b\n" "$GREEN $* $OFF"
+  }
+fi
+if [ -z "$(which failure)" ]; then
+	function failure {
+	  printf "%b\n" "$RED $* $OFF"
+  }
+fi
+
+RETVAL=0
 
 start() {
 	echo -n $"Starting GitBucket server: "
 
-	# Compile statup parameters
+  START_OPTS=
 	if [ $GITBUCKET_PORT ]; then
 		START_OPTS="${START_OPTS} --port=${GITBUCKET_PORT}"
 	fi
@@ -39,21 +57,16 @@ start() {
 	if [ $GITBUCKET_HOST ]; then
 		START_OPTS="${START_OPTS} --host=${GITBUCKET_HOST}"
 	fi
-	if [ $GITBUCKET_HTTPS ]; then
-		START_OPTS="${START_OPTS} --https=true"
-	fi
 
-	# Run the Java process
 	GITBUCKET_HOME="${GITBUCKET_HOME}" java $GITBUCKET_JVM_OPTS -jar $GITBUCKET_WAR_FILE $START_OPTS >>$LOG_FILE 2>&1 &
 	RETVAL=$?
 
-	# Store PID of the Java process into a file
 	echo $! > $PID_FILE
 
 	if [ $RETVAL -eq 0 ] ; then
-		success "GitBucket startup"
+		success "Success"
 	else
-		failure "GitBucket startup"
+		failure "Exit code $RETVAL"
 	fi
 
 	echo
@@ -85,25 +98,41 @@ restart() {
 	start
 }
 
+## MacOS proxies for System V service hooks:
+StartService() {
+	start
+}
 
-case "$1" in
+StopService() {
-start)
+	stop
+}
+
+RestartService() {
+	restart
+}
+
+
+if [ `isMac` ]; then
+  RunService "$1"
+else
+	case "$1" in
+		start)
 			start
 			;;
-stop)
+		stop)
 			stop
 			;;
-restart)
+		restart)
 			restart
 			;;
-status)
+		status)
 			status -p $PID_FILE java
 			RETVAL=$?
 			;;
-*)
+		*)
 			echo $"Usage: $0 [start|stop|restart|status]"
 			RETVAL=2
-esac
+	esac
+  exit $RETVAL
+fi
 
-
-exit $RETVAL

contrib/install

@@ -0,0 +1,69 @@
+#!/bin/bash
+
+# Only tested on Ubuntu 14.04
+
+# Uses information stored in GitBucket git repo on GitHub as defaults.
+# Edit gitbucket.conf before running this
+
+set -e
+
+GITBUCKET_VERSION=2.1
+
+if [ ! -f gitbucket.conf ]; then
+  echo "gitbucket.conf not found, aborting"
+  exit -3
+fi
+source gitbucket.conf
+
+function createDir {
+  if [ ! -d "$1" ]; then
+    echo "Making $1 directory."
+    sudo mkdir -p "$1"
+  fi
+}
+
+if [ "$(which iptables)" ]; then
+  echo "Opening port $GITBUCKET_PORT in firewall."
+  sudo iptables -A INPUT -p tcp --dport $GITBUCKET_PORT -j ACCEPT
+  echo "Please use iptables-persistent:"
+  echo "  sudo apt-get install iptables-persistent"
+  echo "After installed, you can save/reload iptables rules anytime:"
+  echo "  sudo /etc/init.d/iptables-persistent save"
+  echo "  sudo /etc/init.d/iptables-persistent reload"
+fi
+
+createDir "$GITBUCKET_HOME"
+createDir "$GITBUCKET_WAR_DIR"
+createDir "$GITBUCKET_DIR"
+createDir "$GITBUCKET_LOG_DIR"
+
+echo "Fetching GitBucket v$GITBUCKET_VERSION and saving as $GITBUCKET_WAR_FILE"
+sudo wget -qO "$GITBUCKET_WAR_FILE" https://github.com/takezoe/gitbucket/releases/download/$GITBUCKET_VERSION/gitbucket.war
+
+sudo rm -f "$GITBUCKET_LOG_DIR/run.log"
+
+echo "Copying gitbucket.conf to $GITBUCKET_DIR"
+sudo cp gitbucket.conf $GITBUCKET_DIR
+if [ `isUbuntu` ] || [ `isRedHat` ]; then
+  sudo cp gitbucket.init "$GITBUCKET_SERVICE"
+  # Install gitbucket as a service that starts when system boots
+  sudo chown root:root $GITBUCKET_SERVICE
+  sudo chmod 755 $GITBUCKET_SERVICE
+  sudo update-rc.d "$(basename $GITBUCKET_SERVICE)" defaults 98 02
+  echo "Starting GitBucket service"
+  sudo $GITBUCKET_SERVICE start
+elif [ `isMac` ]; then
+  sudo macosx/makePlist
+  echo "Starting GitBucket service"
+  sudo cp gitbucket.conf "$GITBUCKET_SERVICE"
+  sudo cp gitbucket.init "$GITBUCKET_SERVICE"
+  sudo chmod a+x "$GITBUCKET_SERVICE"
+  sudo "$GITBUCKET_SERVICE" start
+else
+  echo "Don't know how to install this OS"
+  exit -2
+fi
+
+if [ $? != 0 ]; then
+  less "$GITBUCKET_LOG_DIR/run.log"
+fi

contrib/linux/redhat/README.md

@@ -0,0 +1,15 @@
+# Contrib Notes #
+
+RPM spec file and init script for Red Hat Enterprise Linux 6.x. 
+
+To create RPM:
+1. Edit `../../gitbucket.conf` to suit.
+2. Edit `gitbucket.init` to suit.
+3. Edit `gitbucket.spec` to suit.
+4. Place `gitbucket.spec` to rpm/SPECS/.
+5. Place `gitbucket.init` and `gitbucket.war` to rpm/SOURCES/.
+6. Execute `rpmbuild -ba rpm/SPECS/gitbucket.spec`
+
+This rpm runs gitbucket not as root user but as gitbucket user.
+This rpm creates user and group named `gitbucket` at installation.
+This rpm make chkconfig of gitbucket to be on.

contrib/linux/redhat/gitbucket.init

@@ -0,0 +1,108 @@
+#!/bin/bash
+#
+# RedHat: /etc/rc.d/init.d/gitbucket
+#
+# Starts the GitBucket server
+#
+# chkconfig: 345 60 40
+# description: Run GitBucket server
+# processname: java
+
+[ -f /etc/rc.d/init.d/functions ] && source /etc/rc.d/init.d/functions  # RedHat
+
+# Default values
+GITBUCKET_HOME=/var/lib/gitbucket
+GITBUCKET_WAR_FILE=/usr/share/gitbucket/lib/gitbucket.war
+
+# Pull in cq settings
+[ -f /etc/sysconfig/gitbucket ] && source /etc/sysconfig/gitbucket # RedHat
+[ -f gitbucket.conf ] && source gitbucket.conf  # For all systems
+
+# Location of the log and PID file
+LOG_FILE=$GITBUCKET_LOG_DIR/run.log
+
+RED='\033[1m\E[37;41m'
+GREEN='\033[1m\E[37;42m'
+OFF='\E[0m'
+
+RETVAL=0
+
+start() {
+	echo -n $"Starting GitBucket server: "
+
+  START_OPTS=
+	if [ $GITBUCKET_PORT ]; then
+		START_OPTS="${START_OPTS} --port=${GITBUCKET_PORT}"
+	fi
+	if [ $GITBUCKET_PREFIX ]; then
+		START_OPTS="${START_OPTS} --prefix=${GITBUCKET_PREFIX}"
+	fi
+	if [ $GITBUCKET_HOST ]; then
+		START_OPTS="${START_OPTS} --host=${GITBUCKET_HOST}"
+	fi
+
+	GITBUCKET_HOME="${GITBUCKET_HOME}" daemon --user=gitbucket java $GITBUCKET_JVM_OPTS -jar $GITBUCKET_WAR_FILE $START_OPTS >>$LOG_FILE 2>&1 &
+  sleep 3
+  pgrep -f $GITBUCKET_WAR_FILE >> $LOG_FILE 2>&1
+  RETVAL=$?
+
+	if [ $RETVAL -eq 0 ] ; then
+		success "Success"
+	else
+		failure "Exit code $RETVAL"
+	fi
+
+	echo
+	return $RETVAL
+}
+
+
+stop() {
+	echo -n $"Stopping GitBucket server: "
+
+	# Run the Java process
+	pkill -f $GITBUCKET_WAR_FILE >>$LOG_FILE 2>&1
+	RETVAL=$?
+
+	if [ $RETVAL -eq 0 ] ; then
+		success "GitBucket stopping"
+	else
+		failure "GitBucket stopping"
+	fi
+
+	echo
+	return $RETVAL
+}
+
+
+restart() {
+	stop
+	start
+}
+
+case "$1" in
+	start)
+		start
+		;;
+	stop)
+		stop
+		;;
+	restart)
+		restart
+		;;
+	status)
+    pgrep -f $GITBUCKET_WAR_FILE >> $LOG_FILE 2>&1
+		RETVAL=$?
+    if [ $RETVAL -eq 0 ]; then
+      echo $"GitBucket is running...."
+    else
+      echo $"GitBucket is stopped"
+    fi
+		;;
+	*)
+		echo $"Usage: $0 [start|stop|restart|status]"
+		RETVAL=2
+esac
+
+exit $RETVAL
+

contrib/linux/redhat/gitbucket.spec

@@ -1,6 +1,6 @@
 Name:		gitbucket
 Summary:	GitHub clone written with Scala.
-Version:	1.7
+Version:	2.6
 Release:	1%{?dist}
 License:	Apache
 URL:		https://github.com/takezoe/gitbucket
@@ -26,6 +26,25 @@ GitBucket is the easily installable GitHub clone written with Scala.
 %{__install} -m 0644 %{SOURCE2} %{buildroot}%{_sysconfdir}/sysconfig/%{name}
 touch %{buildroot}%{_localstatedir}/log/%{name}/run.log
 
+%pre
+/usr/sbin/groupadd -r gitbucket &> /dev/null || :
+/usr/sbin/useradd -g gitbucket -s /bin/false -r -c "GitBucket GitHub clone" -d %{_sharedstatedir}/%{name} gitbucket &> /dev/null || :
+
+%post
+/sbin/chkconfig --add gitbucket
+
+%preun
+if [ "$1" = 0 ]; then
+  /sbin/service gitbucket stop > /dev/null 2>&1
+  /sbin/chkconfig --del gitbucket
+fi
+exit 0
+
+%postun
+if [ "$1" -ge 1 ]; then
+  /sbin/service gitbucket restart > /dev/null 2>&1
+fi
+exit 0
 
 %clean
 [ "%{buildroot}" != / ] && %{__rm} -rf "%{buildroot}"
@@ -34,12 +53,28 @@ touch %{buildroot}%{_localstatedir}/log/%{name}/run.log
 %files
 %defattr(-,root,root,-)
 %{_datarootdir}/%{name}/lib/%{name}.war
-%{_sysconfdir}/init.d/%{name}
+%config %{_sysconfdir}/init.d/%{name}
-%config %{_sysconfdir}/sysconfig/%{name}
+%config(noreplace) %{_sysconfdir}/sysconfig/%{name}
-%{_localstatedir}/log/%{name}/run.log
+%attr(0755,gitbucket,gitbucket) %{_sharedstatedir}/%{name}
+%attr(0750,gitbucket,gitbucket) %{_localstatedir}/log/%{name}
 
 
 %changelog
+* Mon Nov 24 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.6
+
+* Sun Nov 09 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.5
+
+* Sun Oct 26 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.4.1
+
+* Mon Jul 21 2014 Toru Takahashi <torutk at gmail.com>
+- execute as gitbucket user
+
+* Sun Jul 20 2014 Toru Takahashi <torutk at gmail.com>
+- Version bump to v2.1.
+
 * Mon Oct 28 2013 Jiri Tyr <jiri_DOT_tyr at gmail.com>
 - Version bump to v1.7.
 

contrib/macosx/makePlist

@@ -1,3 +1,10 @@
+#!/bin/bash
+
+# From http://docstore.mik.ua/orelly/unix3/mac/ch02_02.htm
+source gitbucket.conf
+GITBUCKET_SERVICE_DIR=`dirname "$GITBUCKET_SERVICE"`
+mkdir -p "$GITBUCKET_SERVICE_DIR"
+cat << EOF > "$GITBUCKET_SERVICE_DIR/gitbucket.plist"
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
 <plist version="1.0">
@@ -7,14 +14,15 @@
     <key>ProgramArguments</key>
     <array>
       <string>/usr/bin/java</string>
-      <string>-Dmail.smtp.starttls.enable=true</string>
+      <string>$GITBUCKET_JVM_OPTS</string>
       <string>-jar</string>
       <string>gitbucket.war</string>
-      <string>--host=127.0.0.1</string>
+      <string>--host=$GITBUCKET_HOST</string>
-      <string>--port=8080</string>
+      <string>--port=$GITBUCKET_PORT</string>
       <string>--https=true</string>
     </array>
     <key>RunAtLoad</key>
     <true/>
   </dict>
 </plist>
+EOF

contrib/redhat/gitbucket.conf

@@ -1,20 +0,0 @@
-# Bind host
-#GITBUCKET_HOST=0.0.0.0
-
-# Server port
-#GITBUCKET_PORT=8080
-
-# Force HTTPS scheme
-#GITBUCKET_HTTPS=false
-
-# Data directory (GITBUCKET_HOME/gitbucket)
-#GITBUCKET_HOME=/var/lib/gitbucket
-
-# Path to the WAR file
-#GITBUCKET_WAR_FILE=/usr/share/gitbucket/lib/gitbucket.war
-
-# URL prefix for the GitBucket page (http://<host>:<port>/<prefix>/)
-#GITBUCKET_PREFIX=
-
-# Other Java option
-#GITBUCKET_JVM_OPTS=

project/build.properties

@@ -1 +1 @@
-sbt.version=0.12.3
+sbt.version=0.13.5

project/build.scala

@@ -1,20 +1,24 @@
 import sbt._
 import Keys._
 import org.scalatra.sbt._
-import twirl.sbt.TwirlPlugin._
 import com.typesafe.sbteclipse.plugin.EclipsePlugin.EclipseKeys
+import play.twirl.sbt.SbtTwirl
+import play.twirl.sbt.Import.TwirlKeys._
 
 object MyBuild extends Build {
   val Organization = "jp.sf.amateras"
   val Name = "gitbucket"
   val Version = "0.0.1"
-  val ScalaVersion = "2.10.3"
+  val ScalaVersion = "2.11.2"
-  val ScalatraVersion = "2.2.1"
+  val ScalatraVersion = "2.3.0"
 
   lazy val project = Project (
     "gitbucket",
-    file("."),
+    file(".")
-    settings = Defaults.defaultSettings ++ ScalatraPlugin.scalatraWithJRebel ++ Seq(
+  )
+  .settings(ScalatraPlugin.scalatraWithJRebel: _*)
+  .settings(
+    sourcesInBase := false,
     organization := Organization,
     name := Name,
     version := Version,
@@ -25,29 +29,32 @@ object MyBuild extends Build {
     ),
     scalacOptions := Seq("-deprecation", "-language:postfixOps"),
     libraryDependencies ++= Seq(
-        "org.eclipse.jgit" % "org.eclipse.jgit.http.server" % "3.0.0.201306101825-r",
+      "org.eclipse.jgit" % "org.eclipse.jgit.http.server" % "3.4.1.201406201815-r",
+      "org.eclipse.jgit" % "org.eclipse.jgit.archive" % "3.4.1.201406201815-r",
       "org.scalatra" %% "scalatra" % ScalatraVersion,
       "org.scalatra" %% "scalatra-specs2" % ScalatraVersion % "test",
       "org.scalatra" %% "scalatra-json" % ScalatraVersion,
-        "org.json4s" %% "json4s-jackson" % "3.2.5",
+      "org.json4s" %% "json4s-jackson" % "3.2.10",
-        "jp.sf.amateras" %% "scalatra-forms" % "0.0.11",
+      "jp.sf.amateras" %% "scalatra-forms" % "0.1.0",
       "commons-io" % "commons-io" % "2.4",
       "org.pegdown" % "pegdown" % "1.4.1",
       "org.apache.commons" % "commons-compress" % "1.5",
       "org.apache.commons" % "commons-email" % "1.3.1",
       "org.apache.httpcomponents" % "httpclient" % "4.3",
-        "com.typesafe.slick" %% "slick" % "1.0.1",
+      "org.apache.sshd" % "apache-sshd" % "0.11.0",
+      "com.typesafe.slick" %% "slick" % "2.1.0",
       "com.novell.ldap" % "jldap" % "2009-10-07",
-        "com.h2database" % "h2" % "1.3.173",
+      "org.quartz-scheduler" % "quartz" % "2.2.1",
+      "com.h2database" % "h2" % "1.4.180",
       "ch.qos.logback" % "logback-classic" % "1.0.13" % "runtime",
       "org.eclipse.jetty" % "jetty-webapp" % "8.1.8.v20121106" % "container;provided",
       "org.eclipse.jetty.orbit" % "javax.servlet" % "3.0.0.v201112011016" % "container;provided;test" artifacts Artifact("javax.servlet", "jar", "jar"),
-        "junit" % "junit" % "4.11" % "test"
+      "junit" % "junit" % "4.11" % "test",
+      "com.typesafe.play" %% "twirl-compiler" % "1.0.2"
     ),
     EclipseKeys.withSource := true,
-      javacOptions in compile ++= Seq("-target", "6", "-source", "6"),
+    javacOptions in compile ++= Seq("-target", "7", "-source", "7"),
     testOptions in Test += Tests.Argument(TestFrameworks.Specs2, "junitxml", "console"),
     packageOptions += Package.MainClass("JettyLauncher")
-    ) ++ seq(Twirl.settings: _*)
+  ).enablePlugins(SbtTwirl)
-  )
 }

project/plugins.sbt

@@ -1,9 +1,9 @@
-addSbtPlugin("com.typesafe.sbteclipse" % "sbteclipse-plugin" % "2.2.0")
+addSbtPlugin("com.typesafe.sbteclipse" % "sbteclipse-plugin" % "2.4.0")
 
-addSbtPlugin("com.github.mpeltonen" % "sbt-idea" % "1.5.1")
+addSbtPlugin("com.github.mpeltonen" % "sbt-idea" % "1.6.0")
 
-addSbtPlugin("org.scalatra.sbt" % "scalatra-sbt" % "0.3.0")
+addSbtPlugin("org.scalatra.sbt" % "scalatra-sbt" % "0.3.5")
 
-addSbtPlugin("io.spray" % "sbt-twirl" % "0.6.1")
+addSbtPlugin("com.typesafe.sbt" % "sbt-twirl" % "1.0.2")
 
-addSbtPlugin("com.timushev.sbt" % "sbt-updates" % "0.1.2")
+addSbtPlugin("com.timushev.sbt" % "sbt-updates" % "0.1.4")

sbt.bat

@@ -1,2 +1,2 @@
 set SCRIPT_DIR=%~dp0
-java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -jar "%SCRIPT_DIR%\sbt-launch-0.12.3.jar" %*
+java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.5.jar" %*

sbt.sh

@@ -1 +1,2 @@
-java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -jar `dirname $0`/sbt-launch-0.12.3.jar "$@"
+#!/bin/sh
+java -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.5.jar "$@"

src/main/java/JettyLauncher.java

@@ -1,10 +1,8 @@
-import org.eclipse.jetty.io.EndPoint;
-import org.eclipse.jetty.server.Request;
 import org.eclipse.jetty.server.Server;
 import org.eclipse.jetty.server.nio.SelectChannelConnector;
 import org.eclipse.jetty.webapp.WebAppContext;
 
-import java.io.IOException;
+import java.io.File;
 import java.net.URL;
 import java.security.ProtectionDomain;
 
@@ -44,6 +42,14 @@ public class JettyLauncher {
         server.addConnector(connector);
 
         WebAppContext context = new WebAppContext();
+
+        File tmpDir = new File(getGitBucketHome(), "tmp");
+        if(tmpDir.exists()){
+            deleteDirectory(tmpDir);
+        }
+        tmpDir.mkdirs();
+        context.setTempDirectory(tmpDir);
+
         ProtectionDomain domain = JettyLauncher.class.getProtectionDomain();
         URL location = domain.getCodeSource().getLocation();
 
@@ -59,4 +65,27 @@ public class JettyLauncher {
         server.start();
         server.join();
     }
+
+    private static File getGitBucketHome(){
+        String home = System.getProperty("gitbucket.home");
+        if(home != null && home.length() > 0){
+            return new File(home);
+        }
+        home = System.getenv("GITBUCKET_HOME");
+        if(home != null && home.length() > 0){
+            return new File(home);
+        }
+        return new File(System.getProperty("user.home"), ".gitbucket");
+    }
+
+    private static void deleteDirectory(File dir){
+        for(File file: dir.listFiles()){
+            if(file.isFile()){
+                file.delete();
+            } else if(file.isDirectory()){
+                deleteDirectory(file);
+            }
+        }
+        dir.delete();
+    }
 }

src/main/resources/update/1_12.sql

@@ -0,0 +1,11 @@
+ALTER TABLE GROUP_MEMBER ADD COLUMN MANAGER BOOLEAN DEFAULT FALSE;
+
+CREATE TABLE SSH_KEY (
+  USER_NAME VARCHAR(100) NOT NULL,
+  SSH_KEY_ID INT AUTO_INCREMENT,
+  TITLE VARCHAR(100) NOT NULL,
+  PUBLIC_KEY TEXT NOT NULL
+);
+
+ALTER TABLE SSH_KEY ADD CONSTRAINT IDX_SSH_KEY_PK PRIMARY KEY (USER_NAME, SSH_KEY_ID);
+ALTER TABLE SSH_KEY ADD CONSTRAINT IDX_SSH_KEY_FK0 FOREIGN KEY (USER_NAME) REFERENCES ACCOUNT (USER_NAME);

src/main/resources/update/1_13.sql

@@ -0,0 +1 @@
+DROP TABLE COMMIT_LOG;

src/main/resources/update/2_3.sql

@@ -0,0 +1,6 @@
+CREATE TABLE PLUGIN (
+  PLUGIN_ID VARCHAR(100) NOT NULL,
+  VERSION   VARCHAR(100) NOT NULL
+);
+
+ALTER TABLE PLUGIN ADD CONSTRAINT IDX_PLUGIN_PK PRIMARY KEY (PLUGIN_ID);

src/main/resources/update/2_7.sql

@@ -0,0 +1,18 @@
+CREATE TABLE COMMIT_COMMENT (
+    USER_NAME VARCHAR(100) NOT NULL,
+    REPOSITORY_NAME VARCHAR(100) NOT NULL,
+    COMMIT_ID VARCHAR(100) NOT NULL,
+    COMMENT_ID INT AUTO_INCREMENT,
+    COMMENTED_USER_NAME VARCHAR(100) NOT NULL,
+    CONTENT TEXT NOT NULL,
+    FILE_NAME NVARCHAR(100),
+    OLD_LINE_NUMBER INT,
+    NEW_LINE_NUMBER INT,
+    REGISTERED_DATE TIMESTAMP NOT NULL,
+    UPDATED_DATE TIMESTAMP NOT NULL,
+    PULL_REQUEST BOOLEAN NOT NULL
+);
+
+ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_PK PRIMARY KEY (COMMENT_ID);
+ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
+ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_1 UNIQUE (USER_NAME, REPOSITORY_NAME, COMMIT_ID, COMMENT_ID);

src/main/scala/ScalatraBootstrap.scala

@@ -1,6 +1,6 @@
-import _root_.servlet.{BasicAuthenticationFilter, TransactionFilter}
+import _root_.servlet.{PluginActionInvokeFilter, BasicAuthenticationFilter, TransactionFilter}
 import app._
-import jp.sf.amateras.scalatra.forms.ValidationJavaScriptProvider
+//import jp.sf.amateras.scalatra.forms.ValidationJavaScriptProvider
 import org.scalatra._
 import javax.servlet._
 import java.util.EnumSet
@@ -10,6 +10,8 @@ class ScalatraBootstrap extends LifeCycle {
     // Register TransactionFilter and BasicAuthenticationFilter at first
     context.addFilter("transactionFilter", new TransactionFilter)
     context.getFilterRegistration("transactionFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/*")
+    context.addFilter("pluginActionInvokeFilter", new PluginActionInvokeFilter)
+    context.getFilterRegistration("pluginActionInvokeFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/*")
     context.addFilter("basicAuthenticationFilter", new BasicAuthenticationFilter)
     context.getFilterRegistration("basicAuthenticationFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/git/*")
 
@@ -20,7 +22,6 @@ class ScalatraBootstrap extends LifeCycle {
     context.mount(new DashboardController, "/*")
     context.mount(new UserManagementController, "/*")
     context.mount(new SystemSettingsController, "/*")
-    context.mount(new CreateRepositoryController, "/*")
     context.mount(new AccountController, "/*")
     context.mount(new RepositoryViewerController, "/*")
     context.mount(new WikiController, "/*")
@@ -29,7 +30,6 @@ class ScalatraBootstrap extends LifeCycle {
     context.mount(new IssuesController, "/*")
     context.mount(new PullRequestsController, "/*")
     context.mount(new RepositorySettingsController, "/*")
-    context.mount(new ValidationJavaScriptProvider, "/assets/common/js/*")
 
     // Create GITBUCKET_HOME directory if it does not exist
     val dir = new java.io.File(_root_.util.Directory.GitBucketHome)

src/main/scala/app/AccountController.scala

@@ -1,17 +1,27 @@
 package app
 
 import service._
-import util.{FileUtil, OneselfAuthenticator}
+import util._
 import util.StringUtil._
 import util.Directory._
+import util.ControlUtil._
+import util.Implicits._
+import ssh.SshUtil
 import jp.sf.amateras.scalatra.forms._
 import org.apache.commons.io.FileUtils
+import org.scalatra.i18n.Messages
+import org.eclipse.jgit.api.Git
+import org.eclipse.jgit.lib.{FileMode, Constants}
+import org.eclipse.jgit.dircache.DirCache
+import model.GroupMember
 
 class AccountController extends AccountControllerBase
-  with AccountService with RepositoryService with ActivityService with OneselfAuthenticator
+  with AccountService with RepositoryService with ActivityService with WikiService with LabelsService with SshKeyService
+  with OneselfAuthenticator with UsersAuthenticator with GroupManagerAuthenticator with ReadableUsersAuthenticator
 
 trait AccountControllerBase extends AccountManagementControllerBase {
-  self: AccountService with RepositoryService with ActivityService with OneselfAuthenticator =>
+  self: AccountService with RepositoryService with ActivityService with WikiService with LabelsService with SshKeyService
+    with OneselfAuthenticator with UsersAuthenticator with GroupManagerAuthenticator with ReadableUsersAuthenticator =>
 
   case class AccountNewForm(userName: String, password: String, fullName: String, mailAddress: String,
                             url: Option[String], fileId: Option[String])
@@ -19,6 +29,8 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   case class AccountEditForm(password: Option[String], fullName: String, mailAddress: String,
                              url: Option[String], fileId: Option[String], clearImage: Boolean)
 
+  case class SshKeyForm(title: String, publicKey: String)
+
   val newForm = mapping(
     "userName"    -> trim(label("User name"    , text(required, maxlength(100), identifier, uniqueUserName))),
     "password"    -> trim(label("Password"     , text(required, maxlength(20)))),
@@ -37,6 +49,45 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     "clearImage"  -> trim(label("Clear image"  , boolean()))
   )(AccountEditForm.apply)
 
+  val sshKeyForm = mapping(
+    "title"     -> trim(label("Title", text(required, maxlength(100)))),
+    "publicKey" -> trim(label("Key"  , text(required, validPublicKey)))
+  )(SshKeyForm.apply)
+
+  case class NewGroupForm(groupName: String, url: Option[String], fileId: Option[String], members: String)
+  case class EditGroupForm(groupName: String, url: Option[String], fileId: Option[String], members: String, clearImage: Boolean)
+
+  val newGroupForm = mapping(
+    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName))),
+    "url"       -> trim(label("URL"        ,optional(text(maxlength(200))))),
+    "fileId"    -> trim(label("File ID"    ,optional(text()))),
+    "members"   -> trim(label("Members"    ,text(required, members)))
+  )(NewGroupForm.apply)
+
+  val editGroupForm = mapping(
+    "groupName"  -> trim(label("Group name"  ,text(required, maxlength(100), identifier))),
+    "url"        -> trim(label("URL"         ,optional(text(maxlength(200))))),
+    "fileId"     -> trim(label("File ID"     ,optional(text()))),
+    "members"    -> trim(label("Members"     ,text(required, members))),
+    "clearImage" -> trim(label("Clear image" ,boolean()))
+  )(EditGroupForm.apply)
+
+  case class RepositoryCreationForm(owner: String, name: String, description: Option[String], isPrivate: Boolean, createReadme: Boolean)
+  case class ForkRepositoryForm(owner: String, name: String)
+
+  val newRepositoryForm = mapping(
+    "owner"        -> trim(label("Owner"          , text(required, maxlength(40), identifier, existsAccount))),
+    "name"         -> trim(label("Repository name", text(required, maxlength(40), identifier, uniqueRepository))),
+    "description"  -> trim(label("Description"    , optional(text()))),
+    "isPrivate"    -> trim(label("Repository Type", boolean())),
+    "createReadme" -> trim(label("Create README"  , boolean()))
+  )(RepositoryCreationForm.apply)
+
+  val forkRepositoryForm = mapping(
+    "owner" -> trim(label("Repository owner", text(required))),
+    "name"  -> trim(label("Repository name",  text(required)))
+  )(ForkRepositoryForm.apply)
+
   /**
    * Displays user information.
    */
@@ -51,18 +102,30 @@ trait AccountControllerBase extends AccountManagementControllerBase {
             getActivitiesByUser(userName, true))
 
         // Members
-        case "members" if(account.isGroupAccount) =>
+        case "members" if(account.isGroupAccount) => {
-          _root_.account.html.members(account, getGroupMembers(account.userName))
+          val members = getGroupMembers(account.userName)
+          _root_.account.html.members(account, members.map(_.userName),
+            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager }))
+        }
 
         // Repositories
-        case _ =>
+        case _ => {
+          val members = getGroupMembers(account.userName)
           _root_.account.html.repositories(account,
             if(account.isGroupAccount) Nil else getGroupsByUserName(userName),
-            getVisibleRepositories(context.loginAccount, baseUrl, Some(userName)))
+            getVisibleRepositories(context.loginAccount, context.baseUrl, Some(userName)),
+            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager }))
+        }
       }
     } getOrElse NotFound
   }
 
+  get("/:userName.atom") {
+    val userName = params("userName")
+    contentType = "application/atom+xml; type=feed"
+    helper.xml.feed(getActivitiesByUser(userName, true))
+  }
+
   get("/:userName/_avatar"){
     val userName = params("userName")
     getAccountByUserName(userName).flatMap(_.image).map { image =>
@@ -76,7 +139,9 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 
   get("/:userName/_edit")(oneselfOnly {
     val userName = params("userName")
-    getAccountByUserName(userName).map(x => account.html.edit(Some(x), flash.get("info"))) getOrElse NotFound
+    getAccountByUserName(userName).map { x =>
+      account.html.edit(x, flash.get("info"))
+    } getOrElse NotFound
   })
 
   post("/:userName/_edit", editForm)(oneselfOnly { form =>
@@ -116,22 +181,254 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     redirect("/")
   })
 
+  get("/:userName/_ssh")(oneselfOnly {
+    val userName = params("userName")
+    getAccountByUserName(userName).map { x =>
+      account.html.ssh(x, getPublicKeys(x.userName))
+    } getOrElse NotFound
+  })
+
+  post("/:userName/_ssh", sshKeyForm)(oneselfOnly { form =>
+    val userName = params("userName")
+    addPublicKey(userName, form.title, form.publicKey)
+    redirect(s"/${userName}/_ssh")
+  })
+
+  get("/:userName/_ssh/delete/:id")(oneselfOnly {
+    val userName = params("userName")
+    val sshKeyId = params("id").toInt
+    deletePublicKey(userName, sshKeyId)
+    redirect(s"/${userName}/_ssh")
+  })
+
   get("/register"){
-    if(loadSystemSettings().allowAccountRegistration){
+    if(context.settings.allowAccountRegistration){
       if(context.loginAccount.isDefined){
         redirect("/")
       } else {
-        account.html.edit(None, None)
+        account.html.register()
       }
     } else NotFound
   }
 
   post("/register", newForm){ form =>
-    if(loadSystemSettings().allowAccountRegistration){
+    if(context.settings.allowAccountRegistration){
       createAccount(form.userName, sha1(form.password), form.fullName, form.mailAddress, false, form.url)
       updateImage(form.userName, form.fileId, false)
       redirect("/signin")
     } else NotFound
   }
 
+  get("/groups/new")(usersOnly {
+    account.html.group(None, List(GroupMember("", context.loginAccount.get.userName, true)))
+  })
+
+  post("/groups/new", newGroupForm)(usersOnly { form =>
+    createGroup(form.groupName, form.url)
+    updateGroupMembers(form.groupName, form.members.split(",").map {
+      _.split(":") match {
+        case Array(userName, isManager) => (userName, isManager.toBoolean)
+      }
+    }.toList)
+    updateImage(form.groupName, form.fileId, false)
+    redirect(s"/${form.groupName}")
+  })
+
+  get("/:groupName/_editgroup")(managersOnly {
+    defining(params("groupName")){ groupName =>
+      account.html.group(getAccountByUserName(groupName, true), getGroupMembers(groupName))
+    }
+  })
+
+  get("/:groupName/_deletegroup")(managersOnly {
+    defining(params("groupName")){ groupName =>
+      // Remove from GROUP_MEMBER
+      updateGroupMembers(groupName, Nil)
+      // Remove repositories
+      getRepositoryNamesOfUser(groupName).foreach { repositoryName =>
+        deleteRepository(groupName, repositoryName)
+        FileUtils.deleteDirectory(getRepositoryDir(groupName, repositoryName))
+        FileUtils.deleteDirectory(getWikiRepositoryDir(groupName, repositoryName))
+        FileUtils.deleteDirectory(getTemporaryDir(groupName, repositoryName))
+      }
+    }
+    redirect("/")
+  })
+
+  post("/:groupName/_editgroup", editGroupForm)(managersOnly { form =>
+    defining(params("groupName"), form.members.split(",").map {
+      _.split(":") match {
+        case Array(userName, isManager) => (userName, isManager.toBoolean)
+      }
+    }.toList){ case (groupName, members) =>
+      getAccountByUserName(groupName, true).map { account =>
+        updateGroup(groupName, form.url, false)
+
+        // Update GROUP_MEMBER
+        updateGroupMembers(form.groupName, members)
+        // Update COLLABORATOR for group repositories
+        getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
+          removeCollaborators(form.groupName, repositoryName)
+          members.foreach { case (userName, isManager) =>
+            addCollaborator(form.groupName, repositoryName, userName)
+          }
+        }
+
+        updateImage(form.groupName, form.fileId, form.clearImage)
+        redirect(s"/${form.groupName}")
+
+      } getOrElse NotFound
+    }
+  })
+
+  /**
+   * Show the new repository form.
+   */
+  get("/new")(usersOnly {
+    account.html.newrepo(getGroupsByUserName(context.loginAccount.get.userName))
+  })
+
+  /**
+   * Create new repository.
+   */
+  post("/new", newRepositoryForm)(usersOnly { form =>
+    LockUtil.lock(s"${form.owner}/${form.name}"){
+      if(getRepository(form.owner, form.name, context.baseUrl).isEmpty){
+        val ownerAccount  = getAccountByUserName(form.owner).get
+        val loginAccount  = context.loginAccount.get
+        val loginUserName = loginAccount.userName
+
+        // Insert to the database at first
+        createRepository(form.name, form.owner, form.description, form.isPrivate)
+
+        // Add collaborators for group repository
+        if(ownerAccount.isGroupAccount){
+          getGroupMembers(form.owner).foreach { member =>
+            addCollaborator(form.owner, form.name, member.userName)
+          }
+        }
+
+        // Insert default labels
+        insertDefaultLabels(form.owner, form.name)
+
+        // Create the actual repository
+        val gitdir = getRepositoryDir(form.owner, form.name)
+        JGitUtil.initRepository(gitdir)
+
+        if(form.createReadme){
+          using(Git.open(gitdir)){ git =>
+            val builder  = DirCache.newInCore.builder()
+            val inserter = git.getRepository.newObjectInserter()
+            val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
+            val content  = if(form.description.nonEmpty){
+              form.name + "\n" +
+              "===============\n" +
+              "\n" +
+              form.description.get
+            } else {
+              form.name + "\n" +
+              "===============\n"
+            }
+
+            builder.add(JGitUtil.createDirCacheEntry("README.md", FileMode.REGULAR_FILE,
+              inserter.insert(Constants.OBJ_BLOB, content.getBytes("UTF-8"))))
+            builder.finish()
+
+            JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+              Constants.HEAD, loginAccount.fullName, loginAccount.mailAddress, "Initial commit")
+          }
+        }
+
+        // Create Wiki repository
+        createWikiRepository(loginAccount, form.owner, form.name)
+
+        // Record activity
+        recordCreateRepositoryActivity(form.owner, form.name, loginUserName)
+      }
+
+      // redirect to the repository
+      redirect(s"/${form.owner}/${form.name}")
+    }
+  })
+
+  get("/:owner/:repository/fork")(readableUsersOnly { repository =>
+    val loginAccount   = context.loginAccount.get
+    val loginUserName  = loginAccount.userName
+
+    LockUtil.lock(s"${loginUserName}/${repository.name}"){
+      if(repository.owner == loginUserName || getRepository(loginAccount.userName, repository.name, baseUrl).isDefined){
+        // redirect to the repository if repository already exists
+        redirect(s"/${loginUserName}/${repository.name}")
+      } else {
+        // Insert to the database at first
+        val originUserName = repository.repository.originUserName.getOrElse(repository.owner)
+        val originRepositoryName = repository.repository.originRepositoryName.getOrElse(repository.name)
+
+        createRepository(
+          repositoryName       = repository.name,
+          userName             = loginUserName,
+          description          = repository.repository.description,
+          isPrivate            = repository.repository.isPrivate,
+          originRepositoryName = Some(originRepositoryName),
+          originUserName       = Some(originUserName),
+          parentRepositoryName = Some(repository.name),
+          parentUserName       = Some(repository.owner)
+        )
+
+        // Insert default labels
+        insertDefaultLabels(loginUserName, repository.name)
+
+        // clone repository actually
+        JGitUtil.cloneRepository(
+          getRepositoryDir(repository.owner, repository.name),
+          getRepositoryDir(loginUserName, repository.name))
+
+        // Create Wiki repository
+        JGitUtil.cloneRepository(
+          getWikiRepositoryDir(repository.owner, repository.name),
+          getWikiRepositoryDir(loginUserName, repository.name))
+
+        // Record activity
+        recordForkActivity(repository.owner, repository.name, loginUserName)
+        // redirect to the repository
+        redirect(s"/${loginUserName}/${repository.name}")
+      }
+    }
+  })
+
+  private def insertDefaultLabels(userName: String, repositoryName: String): Unit = {
+    createLabel(userName, repositoryName, "bug", "fc2929")
+    createLabel(userName, repositoryName, "duplicate", "cccccc")
+    createLabel(userName, repositoryName, "enhancement", "84b6eb")
+    createLabel(userName, repositoryName, "invalid", "e6e6e6")
+    createLabel(userName, repositoryName, "question", "cc317c")
+    createLabel(userName, repositoryName, "wontfix", "ffffff")
+  }
+
+  private def existsAccount: Constraint = new Constraint(){
+    override def validate(name: String, value: String, messages: Messages): Option[String] =
+      if(getAccountByUserName(value).isEmpty) Some("User or group does not exist.") else None
+  }
+
+  private def uniqueRepository: Constraint = new Constraint(){
+    override def validate(name: String, value: String, params: Map[String, String], messages: Messages): Option[String] =
+      params.get("owner").flatMap { userName =>
+        getRepositoryNamesOfUser(userName).find(_ == value).map(_ => "Repository already exists.")
+      }
+  }
+
+  private def members: Constraint = new Constraint(){
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
+      if(value.split(",").exists {
+        _.split(":") match { case Array(userName, isManager) => isManager.toBoolean }
+      }) None else Some("Must select one manager at least.")
+    }
+  }
+
+  private def validPublicKey: Constraint = new Constraint(){
+    override def validate(name: String, value: String, messages: Messages): Option[String] = SshUtil.str2PublicKey(value) match {
+     case Some(_) => None
+     case None => Some("Key is invalid.")
+    }
+  }
 }

src/main/scala/app/ControllerBase.scala

@@ -9,10 +9,9 @@ import org.scalatra.json._
 import org.json4s._
 import jp.sf.amateras.scalatra.forms._
 import org.apache.commons.io.FileUtils
-import model.Account
+import model._
 import service.{SystemSettingsService, AccountService}
-import javax.servlet.http.{HttpServletResponse, HttpSession, HttpServletRequest}
+import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
-import java.text.SimpleDateFormat
 import javax.servlet.{FilterChain, ServletResponse, ServletRequest}
 import org.scalatra.i18n._
 
@@ -25,10 +24,11 @@ abstract class ControllerBase extends ScalatraFilter
 
   implicit val jsonFormats = DefaultFormats
 
-  // Don't set content type via Accept header.
+// TODO Scala 2.11
-  override def format(implicit request: HttpServletRequest) = ""
+//  // Don't set content type via Accept header.
+//  override def format(implicit request: HttpServletRequest) = ""
 
-  override def doFilter(request: ServletRequest, response: ServletResponse, chain: FilterChain) {
+  override def doFilter(request: ServletRequest, response: ServletResponse, chain: FilterChain): Unit = try {
     val httpRequest  = request.asInstanceOf[HttpServletRequest]
     val httpResponse = response.asInstanceOf[HttpServletResponse]
     val context      = request.getServletContext.getContextPath
@@ -36,15 +36,16 @@ abstract class ControllerBase extends ScalatraFilter
 
     if(path.startsWith("/console/")){
       val account = httpRequest.getSession.getAttribute(Keys.Session.LoginAccount).asInstanceOf[Account]
+      val baseUrl = this.baseUrl(httpRequest)
       if(account == null){
         // Redirect to login form
-        httpResponse.sendRedirect(context + "/signin?" + StringUtil.urlEncode(path))
+        httpResponse.sendRedirect(baseUrl + "/signin?redirect=" + StringUtil.urlEncode(path))
       } else if(account.isAdmin){
         // H2 Console (administrators only)
         chain.doFilter(request, response)
       } else {
         // Redirect to dashboard
-        httpResponse.sendRedirect(context + "/")
+        httpResponse.sendRedirect(baseUrl + "/")
       }
     } else if(path.startsWith("/git/")){
       // Git repository
@@ -53,12 +54,25 @@ abstract class ControllerBase extends ScalatraFilter
       // Scalatra actions
       super.doFilter(request, response, chain)
     }
+  } finally {
+    contextCache.remove();
   }
 
+  private val contextCache = new java.lang.ThreadLocal[Context]()
+
   /**
    * Returns the context object for the request.
    */
-  implicit def context: Context = Context(servletContext.getContextPath, LoginAccount, request)
+  implicit def context: Context = {
+    contextCache.get match {
+      case null => {
+        val context = Context(loadSystemSettings(), LoginAccount, request)
+        contextCache.set(context)
+        context
+      }
+      case context => context
+    }
+  }
 
   private def LoginAccount: Option[Account] = session.getAs[Account](Keys.Session.LoginAccount)
 
@@ -112,18 +126,25 @@ abstract class ControllerBase extends ScalatraFilter
       }
     }
 
-  override def fullUrl(path: String, params: Iterable[(String, Any)] = Iterable.empty,
+  // TODO Scala 2.11
-                       includeContextPath: Boolean = true, includeServletPath: Boolean = true)
+  override def url(path: String, params: Iterable[(String, Any)] = Iterable.empty,
-                      (implicit request: HttpServletRequest, response: HttpServletResponse) =
+                   includeContextPath: Boolean = true, includeServletPath: Boolean = true,
+                   absolutize: Boolean = true, withSessionId: Boolean = true)
+                  (implicit request: HttpServletRequest, response: HttpServletResponse): String =
     if (path.startsWith("http")) path
-    else baseUrl + url(path, params, false, false)
+    else baseUrl + super.url(path, params, false, false, false)
 
 }
 
 /**
  * Context object for the current request.
  */
-case class Context(path: String, loginAccount: Option[Account], request: HttpServletRequest){
+case class Context(settings: SystemSettingsService.SystemSettings, loginAccount: Option[Account], request: HttpServletRequest){
+
+  val path = settings.baseUrl.getOrElse(request.getContextPath)
+  val currentPath = request.getRequestURI.substring(request.getContextPath.length)
+  val baseUrl = settings.baseUrl(request)
+  val host = new java.net.URL(baseUrl).getHost
 
   /**
    * Get object from cache.
@@ -145,7 +166,7 @@ case class Context(path: String, loginAccount: Option[Account], request: HttpSer
 /**
  * Base trait for controllers which manages account information.
  */
-trait AccountManagementControllerBase extends ControllerBase with FileUploadControllerBase {
+trait AccountManagementControllerBase extends ControllerBase {
   self: AccountService  =>
 
   protected def updateImage(userName: String, fileId: Option[String], clearImage: Boolean): Unit =
@@ -156,9 +177,9 @@ trait AccountManagementControllerBase extends ControllerBase with FileUploadCont
       }
     } else {
       fileId.map { fileId =>
-        val filename = "avatar." + FileUtil.getExtension(getUploadedFilename(fileId).get)
+        val filename = "avatar." + FileUtil.getExtension(session.getAndRemove(Keys.Session.Upload(fileId)).get)
         FileUtils.moveFile(
-          getTemporaryFile(fileId),
+          new java.io.File(getTemporaryDir(session.getId), fileId),
           new java.io.File(getUserUploadDir(userName), filename)
         )
         updateAvatarImage(userName, Some(filename))
@@ -178,28 +199,3 @@ trait AccountManagementControllerBase extends ControllerBase with FileUploadCont
   }
 
 }
-
-/**
- * Base trait for controllers which needs file uploading feature.
- */
-trait FileUploadControllerBase {
-
-  def generateFileId: String =
-    new SimpleDateFormat("yyyyMMddHHmmSSsss").format(new java.util.Date(System.currentTimeMillis))
-
-  def TemporaryDir(implicit session: HttpSession): java.io.File =
-    new java.io.File(GitBucketHome, s"tmp/_upload/${session.getId}")
-
-  def getTemporaryFile(fileId: String)(implicit session: HttpSession): java.io.File =
-    new java.io.File(TemporaryDir, fileId)
-
-  //  def removeTemporaryFile(fileId: String)(implicit session: HttpSession): Unit =
-  //    getTemporaryFile(fileId).delete()
-
-  def removeTemporaryFiles()(implicit session: HttpSession): Unit =
-    FileUtils.deleteDirectory(TemporaryDir)
-
-  def getUploadedFilename(fileId: String)(implicit session: HttpSession): Option[String] =
-    session.getAndRemove[String](Keys.Session.Upload(fileId))
-
-}

src/main/scala/app/CreateRepositoryController.scala

@@ -1,199 +0,0 @@
-package app
-
-import util.Directory._
-import util.ControlUtil._
-import util._
-import service._
-import org.eclipse.jgit.api.Git
-import jp.sf.amateras.scalatra.forms._
-import org.eclipse.jgit.lib.{FileMode, Constants}
-import org.eclipse.jgit.dircache.DirCache
-import org.scalatra.i18n.Messages
-
-class CreateRepositoryController extends CreateRepositoryControllerBase
-  with RepositoryService with AccountService with WikiService with LabelsService with ActivityService
-  with UsersAuthenticator with ReadableUsersAuthenticator
-
-/**
- * Creates new repository.
- */
-trait CreateRepositoryControllerBase extends ControllerBase {
-  self: RepositoryService with AccountService with WikiService with LabelsService with ActivityService
-    with UsersAuthenticator with ReadableUsersAuthenticator =>
-
-  case class RepositoryCreationForm(owner: String, name: String, description: Option[String], isPrivate: Boolean, createReadme: Boolean)
-
-  case class ForkRepositoryForm(owner: String, name: String)
-
-  val newForm = mapping(
-    "owner"        -> trim(label("Owner"          , text(required, maxlength(40), identifier, existsAccount))),
-    "name"         -> trim(label("Repository name", text(required, maxlength(40), identifier, unique))),
-    "description"  -> trim(label("Description"    , optional(text()))),
-    "isPrivate"    -> trim(label("Repository Type", boolean())),
-    "createReadme" -> trim(label("Create README"  , boolean()))
-  )(RepositoryCreationForm.apply)
-
-  val forkForm = mapping(
-    "owner" -> trim(label("Repository owner", text(required))),
-    "name"  -> trim(label("Repository name",  text(required)))
-  )(ForkRepositoryForm.apply)
-
-  /**
-   * Show the new repository form.
-   */
-  get("/new")(usersOnly {
-    html.newrepo(getGroupsByUserName(context.loginAccount.get.userName))
-  })
-  
-  /**
-   * Create new repository.
-   */
-  post("/new", newForm)(usersOnly { form =>
-    LockUtil.lock(s"${form.owner}/${form.name}/create"){
-      if(getRepository(form.owner, form.name, baseUrl).isEmpty){
-        val ownerAccount  = getAccountByUserName(form.owner).get
-        val loginAccount  = context.loginAccount.get
-        val loginUserName = loginAccount.userName
-
-        // Insert to the database at first
-        createRepository(form.name, form.owner, form.description, form.isPrivate)
-
-        // Add collaborators for group repository
-        if(ownerAccount.isGroupAccount){
-          getGroupMembers(form.owner).foreach { userName =>
-            addCollaborator(form.owner, form.name, userName)
-          }
-        }
-
-        // Insert default labels
-        insertDefaultLabels(form.owner, form.name)
-
-        // Create the actual repository
-        val gitdir = getRepositoryDir(form.owner, form.name)
-        JGitUtil.initRepository(gitdir)
-
-        if(form.createReadme){
-          using(Git.open(gitdir)){ git =>
-            val builder  = DirCache.newInCore.builder()
-            val inserter = git.getRepository.newObjectInserter()
-            val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
-            val content  = if(form.description.nonEmpty){
-              form.name + "\n" +
-              "===============\n" +
-              "\n" +
-              form.description.get
-            } else {
-              form.name + "\n" +
-              "===============\n"
-            }
-
-            builder.add(JGitUtil.createDirCacheEntry("README.md", FileMode.REGULAR_FILE,
-              inserter.insert(Constants.OBJ_BLOB, content.getBytes("UTF-8"))))
-            builder.finish()
-
-            JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
-              loginAccount.fullName, loginAccount.mailAddress, "Initial commit")
-          }
-        }
-
-        // Create Wiki repository
-        createWikiRepository(loginAccount, form.owner, form.name)
-
-        // Record activity
-        recordCreateRepositoryActivity(form.owner, form.name, loginUserName)
-      }
-
-      // redirect to the repository
-      redirect(s"/${form.owner}/${form.name}")
-    }
-  })
-
-  get("/:owner/:repository/fork")(readableUsersOnly { repository =>
-    val loginAccount   = context.loginAccount.get
-    val loginUserName  = loginAccount.userName
-
-    LockUtil.lock(s"${loginUserName}/${repository.name}/create"){
-      if(repository.owner == loginUserName){
-        // redirect to the repository
-        redirect(s"/${repository.owner}/${repository.name}")
-      } else {
-        getForkedRepositories(repository.owner, repository.name).find(_._1 == loginUserName).map { case (owner, name) =>
-          // redirect to the repository
-          redirect(s"/${owner}/${name}")
-        } getOrElse {
-          // Insert to the database at first
-          val originUserName = repository.repository.originUserName.getOrElse(repository.owner)
-          val originRepositoryName = repository.repository.originRepositoryName.getOrElse(repository.name)
-
-          createRepository(
-            repositoryName       = repository.name,
-            userName             = loginUserName,
-            description          = repository.repository.description,
-            isPrivate            = repository.repository.isPrivate,
-            originRepositoryName = Some(originRepositoryName),
-            originUserName       = Some(originUserName),
-            parentRepositoryName = Some(repository.name),
-            parentUserName       = Some(repository.owner)
-          )
-
-          // Insert default labels
-          insertDefaultLabels(loginUserName, repository.name)
-
-          // clone repository actually
-          JGitUtil.cloneRepository(
-            getRepositoryDir(repository.owner, repository.name),
-            getRepositoryDir(loginUserName, repository.name))
-
-          // Create Wiki repository
-          JGitUtil.cloneRepository(
-            getWikiRepositoryDir(repository.owner, repository.name),
-            getWikiRepositoryDir(loginUserName, repository.name))
-
-          // insert commit id
-          using(Git.open(getRepositoryDir(loginUserName, repository.name))){ git =>
-            JGitUtil.getRepositoryInfo(loginUserName, repository.name, baseUrl).branchList.foreach { branch =>
-              JGitUtil.getCommitLog(git, branch) match {
-                case Right((commits, _)) => commits.foreach { commit =>
-                  if(!existsCommitId(loginUserName, repository.name, commit.id)){
-                    insertCommitId(loginUserName, repository.name, commit.id)
-                  }
-                }
-                case Left(_) => ???
-              }
-            }
-          }
-
-          // Record activity
-          recordForkActivity(repository.owner, repository.name, loginUserName)
-          // redirect to the repository
-          redirect(s"/${loginUserName}/${repository.name}")
-        }
-      }
-    }
-  })
-
-  private def insertDefaultLabels(userName: String, repositoryName: String): Unit = {
-    createLabel(userName, repositoryName, "bug", "fc2929")
-    createLabel(userName, repositoryName, "duplicate", "cccccc")
-    createLabel(userName, repositoryName, "enhancement", "84b6eb")
-    createLabel(userName, repositoryName, "invalid", "e6e6e6")
-    createLabel(userName, repositoryName, "question", "cc317c")
-    createLabel(userName, repositoryName, "wontfix", "ffffff")
-  }
-
-  private def existsAccount: Constraint = new Constraint(){
-    override def validate(name: String, value: String, messages: Messages): Option[String] =
-      if(getAccountByUserName(value).isEmpty) Some("User or group does not exist.") else None
-  }
-
-  /**
-   * Duplicate check for the repository name.
-   */
-  private def unique: Constraint = new Constraint(){
-    override def validate(name: String, value: String, params: Map[String, String], messages: Messages): Option[String] =
-      params.get("owner").flatMap { userName =>
-        getRepositoryNamesOfUser(userName).find(_ == value).map(_ => "Repository already exists.")
-      }
-  }
-  
-}

src/main/scala/app/DashboardController.scala

@@ -1,18 +1,33 @@
 package app
 
 import service._
-import util.{UsersAuthenticator, Keys}
+import util.{StringUtil, UsersAuthenticator, Keys}
 import util.Implicits._
+import service.IssuesService.IssueSearchCondition
 
 class DashboardController extends DashboardControllerBase
   with IssuesService with PullRequestService with RepositoryService with AccountService
   with UsersAuthenticator
 
 trait DashboardControllerBase extends ControllerBase {
-  self: IssuesService with PullRequestService with RepositoryService with UsersAuthenticator =>
+  self: IssuesService with PullRequestService with RepositoryService with AccountService
+    with UsersAuthenticator =>
 
-  get("/dashboard/issues/repos")(usersOnly {
+  get("/dashboard/issues")(usersOnly {
-    searchIssues("all")
+    val q = request.getParameter("q")
+    val account = context.loginAccount.get
+    Option(q).map { q =>
+      val condition = IssueSearchCondition(q, Map[String, Int]())
+      q match {
+        case q if(q.contains("is:pr")) => redirect(s"/dashboard/pulls?q=${StringUtil.urlEncode(q)}")
+        case q if(q.contains(s"author:${account.userName}")) => redirect(s"/dashboard/issues/created_by${condition.toURL}")
+        case q if(q.contains(s"assignee:${account.userName}")) => redirect(s"/dashboard/issues/assigned${condition.toURL}")
+        case q if(q.contains(s"mentions:${account.userName}")) => redirect(s"/dashboard/issues/mentioned${condition.toURL}")
+        case _ => searchIssues("created_by")
+      }
+    } getOrElse {
+      searchIssues("created_by")
+    }
   })
 
   get("/dashboard/issues/assigned")(usersOnly {
@@ -23,86 +38,99 @@ trait DashboardControllerBase extends ControllerBase {
     searchIssues("created_by")
   })
 
+  get("/dashboard/issues/mentioned")(usersOnly {
+    searchIssues("mentioned")
+  })
+
   get("/dashboard/pulls")(usersOnly {
-    searchPullRequests("created_by", None)
+    val q = request.getParameter("q")
+    val account = context.loginAccount.get
+    Option(q).map { q =>
+      val condition = IssueSearchCondition(q, Map[String, Int]())
+      q match {
+        case q if(q.contains("is:issue")) => redirect(s"/dashboard/issues?q=${StringUtil.urlEncode(q)}")
+        case q if(q.contains(s"author:${account.userName}")) => redirect(s"/dashboard/pulls/created_by${condition.toURL}")
+        case q if(q.contains(s"assignee:${account.userName}")) => redirect(s"/dashboard/pulls/assigned${condition.toURL}")
+        case q if(q.contains(s"mentions:${account.userName}")) => redirect(s"/dashboard/pulls/mentioned${condition.toURL}")
+        case _ => searchPullRequests("created_by")
+      }
+    } getOrElse {
+      searchPullRequests("created_by")
+    }
   })
 
-  get("/dashboard/pulls/owned")(usersOnly {
+  get("/dashboard/pulls/created_by")(usersOnly {
-    searchPullRequests("created_by", None)
+    searchPullRequests("created_by")
   })
 
-  get("/dashboard/pulls/public")(usersOnly {
+  get("/dashboard/pulls/assigned")(usersOnly {
-    searchPullRequests("not_created_by", None)
+    searchPullRequests("assigned")
   })
 
-  get("/dashboard/pulls/for/:owner/:repository")(usersOnly {
+  get("/dashboard/pulls/mentioned")(usersOnly {
-    searchPullRequests("all", Some(params("owner") + "/" + params("repository")))
+    searchPullRequests("mentioned")
   })
 
+  private def getOrCreateCondition(key: String, filter: String, userName: String) = {
+    val condition = session.putAndGet(key, if(request.hasQueryString){
+      val q = request.getParameter("q")
+      if(q == null){
+        IssueSearchCondition(request)
+      } else {
+        IssueSearchCondition(q, Map[String, Int]())
+      }
+    } else session.getAs[IssueSearchCondition](key).getOrElse(IssueSearchCondition()))
+
+    filter match {
+      case "assigned"  => condition.copy(assigned = Some(userName), author = None          , mentioned = None)
+      case "mentioned" => condition.copy(assigned = None          , author = None          , mentioned = Some(userName))
+      case _           => condition.copy(assigned = None          , author = Some(userName), mentioned = None)
+    }
+  }
+
   private def searchIssues(filter: String) = {
     import IssuesService._
 
-    // condition
-    val condition = session.putAndGet(Keys.Session.DashboardIssues,
-      if(request.hasQueryString) IssueSearchCondition(request)
-      else session.getAs[IssueSearchCondition](Keys.Session.DashboardIssues).getOrElse(IssueSearchCondition())
-    )
-
     val userName  = context.loginAccount.get.userName
-    val repositories = getUserRepositories(userName, baseUrl).map(repo => repo.owner -> repo.name)
+    val condition = getOrCreateCondition(Keys.Session.DashboardIssues, filter, userName)
-    val filterUser = Map(filter -> userName)
+    val userRepos = getUserRepositories(userName, context.baseUrl, true).map(repo => repo.owner -> repo.name)
     val page      = IssueSearchCondition.page(request)
-    // 
-    dashboard.html.issues(
-        issues.html.listparts(
-            searchIssue(condition, filterUser, false, (page - 1) * IssueLimit, IssueLimit, repositories: _*),
-            page,
-            countIssue(condition.copy(state = "open"), filterUser, false, repositories: _*),
-            countIssue(condition.copy(state = "closed"), filterUser, false, repositories: _*),
-            condition),
-        countIssue(condition, Map.empty, false, repositories: _*),
-        countIssue(condition, Map("assigned" -> userName), false, repositories: _*),
-        countIssue(condition, Map("created_by" -> userName), false, repositories: _*),
-        countIssueGroupByRepository(condition, filterUser, false, repositories: _*),
-        condition,
-        filter)    
 
+    dashboard.html.issues(
+      searchIssue(condition, false, (page - 1) * IssueLimit, IssueLimit, userRepos: _*),
+      page,
+      countIssue(condition.copy(state = "open"  ), false, userRepos: _*),
+      countIssue(condition.copy(state = "closed"), false, userRepos: _*),
+      filter match {
+        case "assigned"  => condition.copy(assigned  = Some(userName))
+        case "mentioned" => condition.copy(mentioned = Some(userName))
+        case _           => condition.copy(author    = Some(userName))
+      },
+      filter,
+      getGroupNames(userName))
   }
 
-  private def searchPullRequests(filter: String, repository: Option[String]) = {
+  private def searchPullRequests(filter: String) = {
     import IssuesService._
     import PullRequestService._
 
-    // condition
-    val condition = session.putAndGet(Keys.Session.DashboardPulls, {
-      if(request.hasQueryString) IssueSearchCondition(request)
-      else session.getAs[IssueSearchCondition](Keys.Session.DashboardPulls).getOrElse(IssueSearchCondition())
-    }.copy(repo = repository))
-
     val userName  = context.loginAccount.get.userName
-    val repositories = getUserRepositories(userName, baseUrl).map(repo => repo.owner -> repo.name)
+    val condition = getOrCreateCondition(Keys.Session.DashboardPulls, filter, userName)
-    val filterUser = Map(filter -> userName)
+    val allRepos  = getAllRepositories(userName)
     val page      = IssueSearchCondition.page(request)
 
-    val counts = countIssueGroupByRepository(
-      IssueSearchCondition().copy(state = condition.state), Map.empty, true, repositories: _*)
-
     dashboard.html.pulls(
-      pulls.html.listparts(
+      searchIssue(condition, true, (page - 1) * PullRequestLimit, PullRequestLimit, allRepos: _*),
-        searchIssue(condition, filterUser, true, (page - 1) * PullRequestLimit, PullRequestLimit, repositories: _*),
       page,
-        countIssue(condition.copy(state = "open"), filterUser, true, repositories: _*),
+      countIssue(condition.copy(state = "open"  ), true, allRepos: _*),
-        countIssue(condition.copy(state = "closed"), filterUser, true, repositories: _*),
+      countIssue(condition.copy(state = "closed"), true, allRepos: _*),
-        condition,
+      filter match {
-        None,
+        case "assigned"  => condition.copy(assigned  = Some(userName))
-        false),
+        case "mentioned" => condition.copy(mentioned = Some(userName))
-      getPullRequestCountGroupByUser(condition.state == "closed", userName, None),
+        case _           => condition.copy(author    = Some(userName))
-      getRepositoryNamesOfUser(userName).map { RepoName =>
+      },
-        (userName, RepoName, counts.collectFirst { case (_, RepoName, count) => count }.getOrElse(0))
+      filter,
-      }.sortBy(_._3).reverse,
+      getGroupNames(userName))
-      condition,
-      filter)
-
   }
 
 

src/main/scala/app/FileUploadController.scala

@@ -1,31 +1,44 @@
 package app
 
-import _root_.util.{Keys, FileUtil}
+import util.{Keys, FileUtil}
 import util.ControlUtil._
+import util.Directory._
 import org.scalatra._
-import org.scalatra.servlet.{MultipartConfig, FileUploadSupport}
+import org.scalatra.servlet.{MultipartConfig, FileUploadSupport, FileItem}
 import org.apache.commons.io.FileUtils
 
 /**
  * Provides Ajax based file upload functionality.
  *
- * This servlet saves uploaded file as temporary file and returns the unique id.
+ * This servlet saves uploaded file.
- * You can get uploaded file using [[app.FileUploadControllerBase#getTemporaryFile()]] with this id.
  */
-class FileUploadController extends ScalatraServlet with FileUploadSupport with FileUploadControllerBase {
+class FileUploadController extends ScalatraServlet with FileUploadSupport {
 
   configureMultipartHandling(MultipartConfig(maxFileSize = Some(3 * 1024 * 1024)))
 
   post("/image"){
-    fileParams.get("file") match {
+    execute { (file, fileId) =>
-      case Some(file) if(FileUtil.isImage(file.name)) => defining(generateFileId){ fileId =>
+      FileUtils.writeByteArrayToFile(new java.io.File(getTemporaryDir(session.getId), fileId), file.get)
-        FileUtils.writeByteArrayToFile(getTemporaryFile(fileId), file.get)
       session += Keys.Session.Upload(fileId) -> file.name
+    }
+  }
+
+  post("/image/:owner/:repository"){
+    execute { (file, fileId) =>
+      FileUtils.writeByteArrayToFile(new java.io.File(
+        getAttachedDir(params("owner"), params("repository")),
+        fileId + "." + FileUtil.getExtension(file.getName)), file.get)
+    }
+  }
+
+  private def execute(f: (FileItem, String) => Unit) = fileParams.get("file") match {
+    case Some(file) if(FileUtil.isImage(file.name)) =>
+      defining(FileUtil.generateFileId){ fileId =>
+        f(file, fileId)
+
         Ok(fileId)
       }
-      case None => BadRequest
+    case _ => BadRequest
-    }
   }
 
 }
-

src/main/scala/app/IndexController.scala

@@ -1,6 +1,7 @@
 package app
 
 import util._
+import util.Implicits._
 import service._
 import jp.sf.amateras.scalatra.forms._
 
@@ -19,12 +20,23 @@ trait IndexControllerBase extends ControllerBase {
 
   get("/"){
     val loginAccount = context.loginAccount
-
+    if(loginAccount.isEmpty) {
         html.index(getRecentActivities(),
-      getVisibleRepositories(loginAccount, baseUrl),
+            getVisibleRepositories(loginAccount, context.baseUrl, withoutPhysicalInfo = true),
-      loadSystemSettings(),
+            loginAccount.map{ account => getUserRepositories(account.userName, context.baseUrl, withoutPhysicalInfo = true) }.getOrElse(Nil)
-      loginAccount.map{ account => getUserRepositories(account.userName, baseUrl) }.getOrElse(Nil)
         )
+    } else {
+        val loginUserName = loginAccount.get.userName
+        val loginUserGroups = getGroupsByUserName(loginUserName)
+        var visibleOwnerSet : Set[String] = Set(loginUserName)
+        
+        visibleOwnerSet ++= loginUserGroups
+
+        html.index(getRecentActivitiesByOwners(visibleOwnerSet),
+            getVisibleRepositories(loginAccount, context.baseUrl, withoutPhysicalInfo = true),
+            loginAccount.map{ account => getUserRepositories(account.userName, context.baseUrl, withoutPhysicalInfo = true) }.getOrElse(Nil) 
+        )
+    }
   }
 
   get("/signin"){
@@ -32,11 +44,11 @@ trait IndexControllerBase extends ControllerBase {
     if(redirect.isDefined && redirect.get.startsWith("/")){
       flash += Keys.Flash.Redirect -> redirect.get
     }
-    html.signin(loadSystemSettings())
+    html.signin()
   }
 
   post("/signin", form){ form =>
-    authenticate(loadSystemSettings(), form.userName, form.password) match {
+    authenticate(context.settings, form.userName, form.password) match {
       case Some(account) => signin(account)
       case None          => redirect("/signin")
     }
@@ -47,6 +59,11 @@ trait IndexControllerBase extends ControllerBase {
     redirect("/")
   }
 
+  get("/activities.atom"){
+    contentType = "application/atom+xml; type=feed"
+    helper.xml.feed(getRecentActivities())
+  }
+
   /**
    * Set account information into HttpSession and redirect.
    */
@@ -54,8 +71,12 @@ trait IndexControllerBase extends ControllerBase {
     session.setAttribute(Keys.Session.LoginAccount, account)
     updateLastLoginDate(account.userName)
 
+    if(LDAPUtil.isDummyMailAddress(account)) {
+      redirect("/" + account.userName + "/_edit")
+    }
+
     flash.get(Keys.Flash.Redirect).asInstanceOf[Option[String]].map { redirectUrl =>
-      if(redirectUrl.replaceFirst("/$", "") == request.getContextPath){
+      if(redirectUrl.stripSuffix("/") == request.getContextPath){
         redirect("/")
       } else {
         redirect(redirectUrl)
@@ -67,8 +88,6 @@ trait IndexControllerBase extends ControllerBase {
 
   /**
    * JSON API for collaborator completion.
-   *
-   * TODO Move to other controller?
    */
   get("/_user/proposals")(usersOnly {
     contentType = formats("json")
@@ -77,5 +96,11 @@ trait IndexControllerBase extends ControllerBase {
     )
   })
 
+  /**
+   * JSON APU for checking user existence.
+   */
+  post("/_user/existence")(usersOnly {
+    getAccountByUserName(params("userName")).isDefined
+  })
 
 }

src/main/scala/app/IssuesController.scala

@@ -20,7 +20,6 @@ trait IssuesControllerBase extends ControllerBase {
 
   case class IssueCreateForm(title: String, content: Option[String],
     assignedUserName: Option[String], milestoneId: Option[Int], labelNames: Option[String])
-  case class IssueEditForm(title: String, content: Option[String])
   case class CommentForm(issueId: Int, content: String)
   case class IssueStateForm(issueId: Int, content: Option[String])
 
@@ -32,10 +31,12 @@ trait IssuesControllerBase extends ControllerBase {
       "labelNames"       -> trim(optional(text()))
     )(IssueCreateForm.apply)
 
+  val issueTitleEditForm = mapping(
+    "title" -> trim(label("Title", text(required)))
+    )(x => x)
   val issueEditForm = mapping(
-      "title"   -> trim(label("Title", text(required))),
     "content" -> trim(optional(text()))
-    )(IssueEditForm.apply)
+    )(x => x)
 
   val commentForm = mapping(
       "issueId" -> label("Issue Id", number()),
@@ -47,16 +48,13 @@ trait IssuesControllerBase extends ControllerBase {
       "content" -> trim(optional(text()))
     )(IssueStateForm.apply)
 
-  get("/:owner/:repository/issues")(referrersOnly {
+  get("/:owner/:repository/issues")(referrersOnly { repository =>
-    searchIssues("all", _)
+    val q = request.getParameter("q")
-  })
+    if(Option(q).exists(_.contains("is:pr"))){
-
+      redirect(s"/${repository.owner}/${repository.name}/pulls?q=" + StringUtil.urlEncode(q))
-  get("/:owner/:repository/issues/assigned/:userName")(referrersOnly {
+    } else {
-    searchIssues("assigned", _)
+      searchIssues(repository)
-  })
+    }
-
-  get("/:owner/:repository/issues/created_by/:userName")(referrersOnly {
-    searchIssues("created_by", _)
   })
 
   get("/:owner/:repository/issues/:id")(referrersOnly { repository =>
@@ -118,21 +116,36 @@ trait IssuesControllerBase extends ControllerBase {
 
       // notifications
       Notifier().toNotify(repository, issueId, form.content.getOrElse("")){
-        Notifier.msgIssue(s"${baseUrl}/${owner}/${name}/issues/${issueId}")
+        Notifier.msgIssue(s"${context.baseUrl}/${owner}/${name}/issues/${issueId}")
       }
 
       redirect(s"/${owner}/${name}/issues/${issueId}")
     }
   })
 
-  ajaxPost("/:owner/:repository/issues/edit/:id", issueEditForm)(readableUsersOnly { (form, repository) =>
+  ajaxPost("/:owner/:repository/issues/edit_title/:id", issueTitleEditForm)(readableUsersOnly { (title, repository) =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       getIssue(owner, name, params("id")).map { issue =>
         if(isEditable(owner, name, issue.openedUserName)){
           // update issue
-          updateIssue(owner, name, issue.issueId, form.title, form.content)
+          updateIssue(owner, name, issue.issueId, title, issue.content)
           // extract references and create refer comment
-          createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""))
+          createReferComment(owner, name, issue.copy(title = title), title)
+
+          redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
+        } else Unauthorized
+      } getOrElse NotFound
+    }
+  })
+
+  ajaxPost("/:owner/:repository/issues/edit/:id", issueEditForm)(readableUsersOnly { (content, repository) =>
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      getIssue(owner, name, params("id")).map { issue =>
+        if(isEditable(owner, name, issue.openedUserName)){
+          // update issue
+          updateIssue(owner, name, issue.issueId, issue.title, content)
+          // extract references and create refer comment
+          createReferComment(owner, name, issue, content.getOrElse(""))
 
           redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
         } else Unauthorized
@@ -180,13 +193,13 @@ trait IssuesControllerBase extends ControllerBase {
       if(isEditable(x.userName, x.repositoryName, x.openedUserName)){
         params.get("dataType") collect {
           case t if t == "html" => issues.html.editissue(
-              x.title, x.content, x.issueId, x.userName, x.repositoryName)
+              x.content, x.issueId, x.userName, x.repositoryName)
         } getOrElse {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
               Map("title"   -> x.title,
                   "content" -> view.Markdown.toHtml(x.content getOrElse "No description given.",
-                      repository, false, true)
+                      repository, false, true, true, isEditable(x.userName, x.repositoryName, x.openedUserName))
               ))
         }
       } else Unauthorized
@@ -203,7 +216,7 @@ trait IssuesControllerBase extends ControllerBase {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
               Map("content" -> view.Markdown.toHtml(x.content,
-                  repository, false, true)
+                  repository, false, true, true, isEditable(x.userName, x.repositoryName, x.commentedUserName))
               ))
         }
       } else Unauthorized
@@ -234,15 +247,17 @@ trait IssuesControllerBase extends ControllerBase {
     milestoneId("milestoneId").map { milestoneId =>
       getMilestonesWithIssueCount(repository.owner, repository.name)
           .find(_._1.milestoneId == milestoneId).map { case (_, openCount, closeCount) =>
-        issues.milestones.html.progress(openCount + closeCount, closeCount, false)
+        issues.milestones.html.progress(openCount + closeCount, closeCount)
       } getOrElse NotFound
     } getOrElse Ok()
   })
 
   post("/:owner/:repository/issues/batchedit/state")(collaboratorsOnly { repository =>
     defining(params.get("value")){ action =>
-      executeBatch(repository) {
+      action match {
-        handleComment(_, None, repository)( _ => action)
+        case Some("open")  => executeBatch(repository) { handleComment(_, None, repository)( _ => Some("reopen")) }
+        case Some("close") => executeBatch(repository) { handleComment(_, None, repository)( _ => Some("close"))  }
+        case _ => // TODO BadRequest
       }
     }
   })
@@ -273,6 +288,17 @@ trait IssuesControllerBase extends ControllerBase {
     }
   })
 
+  get("/:owner/:repository/_attached/:file")(referrersOnly { repository =>
+    (Directory.getAttachedDir(repository.owner, repository.name) match {
+      case dir if(dir.exists && dir.isDirectory) =>
+        dir.listFiles.find(_.getName.startsWith(params("file") + ".")).map { file =>
+          contentType = FileUtil.getMimeType(file.getName)
+          file
+        }
+      case _ => None
+    }) getOrElse NotFound
+  })
+
   val assignedUserName = (key: String) => params.get(key) filter (_.trim != "")
   val milestoneId: String => Option[Int] = (key: String) => params.get(key).flatMap(_.toIntOpt)
 
@@ -281,7 +307,10 @@ trait IssuesControllerBase extends ControllerBase {
 
   private def executeBatch(repository: RepositoryService.RepositoryInfo)(execute: Int => Unit) = {
     params("checked").split(',') map(_.toInt) foreach execute
-    redirect(s"/${repository.owner}/${repository.name}/issues")
+    params("from") match {
+      case "issues" => redirect(s"/${repository.owner}/${repository.name}/issues")
+      case "pulls"  => redirect(s"/${repository.owner}/${repository.name}/pulls")
+    }
   }
 
   private def createReferComment(owner: String, repository: String, fromIssue: Issue, message: String) = {
@@ -307,10 +336,10 @@ trait IssuesControllerBase extends ControllerBase {
         val (action, recordActivity) =
           getAction(issue)
             .collect {
-            case "close"  => true  -> (Some("close")  ->
+              case "close" if(!issue.closed) => true  ->
-              Some(if(issue.isPullRequest) recordClosePullRequestActivity _ else recordCloseIssueActivity _))
+                (Some("close")  -> Some(if(issue.isPullRequest) recordClosePullRequestActivity _ else recordCloseIssueActivity _))
-            case "reopen" => false -> (Some("reopen") ->
+              case "reopen" if(issue.closed) => false ->
-              Some(recordReopenIssueActivity _))
+                (Some("reopen") -> Some(recordReopenIssueActivity _))
             }
             .map { case (closed, t) =>
               updateClosed(owner, name, issueId, closed)
@@ -325,7 +354,7 @@ trait IssuesControllerBase extends ControllerBase {
           case (content, action) => createComment(owner, name, userName, issueId, content, action)
         }
 
-        // record activity
+        // record comment activity if comment is entered
         content foreach {
           (if(issue.isPullRequest) recordCommentPullRequestActivity _ else recordCommentIssueActivity _)
           (owner, name, userName, issueId, _)
@@ -342,13 +371,13 @@ trait IssuesControllerBase extends ControllerBase {
           case f =>
             content foreach {
               f.toNotify(repository, issueId, _){
-                Notifier.msgComment(s"${baseUrl}/${owner}/${name}/${
+                Notifier.msgComment(s"${context.baseUrl}/${owner}/${name}/${
                   if(issue.isPullRequest) "pull" else "issues"}/${issueId}#comment-${commentId}")
               }
             }
             action foreach {
               f.toNotify(repository, issueId, _){
-                Notifier.msgStatus(s"${baseUrl}/${owner}/${name}/issues/${issueId}")
+                Notifier.msgStatus(s"${context.baseUrl}/${owner}/${name}/issues/${issueId}")
               }
             }
         }
@@ -358,32 +387,33 @@ trait IssuesControllerBase extends ControllerBase {
     }
   }
 
-  private def searchIssues(filter: String, repository: RepositoryService.RepositoryInfo) = {
+  private def searchIssues(repository: RepositoryService.RepositoryInfo) = {
     defining(repository.owner, repository.name){ case (owner, repoName) =>
-      val filterUser = Map(filter -> params.getOrElse("userName", ""))
       val page       = IssueSearchCondition.page(request)
       val sessionKey = Keys.Session.Issues(owner, repoName)
 
       // retrieve search condition
       val condition = session.putAndGet(sessionKey,
-        if(request.hasQueryString) IssueSearchCondition(request)
+        if(request.hasQueryString){
-        else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
+          val q = request.getParameter("q")
+          if(q == null){
+            IssueSearchCondition(request)
+          } else {
+            IssueSearchCondition(q, getMilestones(owner, repoName).map(x => (x.title, x.milestoneId)).toMap)
+          }
+        } else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
       )
 
       issues.html.list(
-          searchIssue(condition, filterUser, false, (page - 1) * IssueLimit, IssueLimit, owner -> repoName),
+          "issues",
+          searchIssue(condition, false, (page - 1) * IssueLimit, IssueLimit, owner -> repoName),
           page,
           (getCollaborators(owner, repoName) :+ owner).sorted,
           getMilestones(owner, repoName),
           getLabels(owner, repoName),
-          countIssue(condition.copy(state = "open"), filterUser, false, owner -> repoName),
+          countIssue(condition.copy(state = "open"  ), false, owner -> repoName),
-          countIssue(condition.copy(state = "closed"), filterUser, false, owner -> repoName),
+          countIssue(condition.copy(state = "closed"), false, owner -> repoName),
-          countIssue(condition, Map.empty, false, owner -> repoName),
-          context.loginAccount.map(x => countIssue(condition, Map("assigned" -> x.userName), false, owner -> repoName)),
-          context.loginAccount.map(x => countIssue(condition, Map("created_by" -> x.userName), false, owner -> repoName)),
-          countIssueGroupByLabels(owner, repoName, condition, filterUser),
           condition,
-          filter,
           repository,
           hasWritePermission(owner, repoName, context.loginAccount))
     }

src/main/scala/app/LabelsController.scala

@@ -2,50 +2,67 @@ package app
 
 import jp.sf.amateras.scalatra.forms._
 import service._
-import util.CollaboratorsAuthenticator
+import util.{ReferrerAuthenticator, CollaboratorsAuthenticator}
+import util.Implicits._
 import org.scalatra.i18n.Messages
+import org.scalatra.Ok
 
 class LabelsController extends LabelsControllerBase
-  with LabelsService with RepositoryService with AccountService with CollaboratorsAuthenticator
+  with LabelsService with IssuesService with RepositoryService with AccountService
+with ReferrerAuthenticator with CollaboratorsAuthenticator
 
 trait LabelsControllerBase extends ControllerBase {
-  self: LabelsService with RepositoryService with CollaboratorsAuthenticator =>
+  self: LabelsService with IssuesService with RepositoryService
+    with ReferrerAuthenticator with CollaboratorsAuthenticator =>
 
   case class LabelForm(labelName: String, color: String)
 
-  val newForm = mapping(
+  val labelForm = mapping(
-    "newLabelName" -> trim(label("Label name", text(required, labelName, maxlength(100)))),
+    "labelName"  -> trim(label("Label name", text(required, labelName, maxlength(100)))),
-    "newColor"     -> trim(label("Color",      text(required, color)))
+    "labelColor" -> trim(label("Color",      text(required, color)))
   )(LabelForm.apply)
 
-  val editForm = mapping(
+  get("/:owner/:repository/issues/labels")(referrersOnly { repository =>
-    "editLabelName" -> trim(label("Label name", text(required, labelName, maxlength(100)))),
+    issues.labels.html.list(
-    "editColor"     -> trim(label("Color",      text(required, color)))
+      getLabels(repository.owner, repository.name),
-  )(LabelForm.apply)
+      countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
-
+      repository,
-  post("/:owner/:repository/issues/label/new", newForm)(collaboratorsOnly { (form, repository) =>
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
-    createLabel(repository.owner, repository.name, form.labelName, form.color.substring(1))
-    redirect(s"/${repository.owner}/${repository.name}/issues")
   })
 
-  ajaxGet("/:owner/:repository/issues/label/edit")(collaboratorsOnly { repository =>
+  ajaxGet("/:owner/:repository/issues/labels/new")(collaboratorsOnly { repository =>
-    issues.labels.html.editlist(getLabels(repository.owner, repository.name), repository)
+    issues.labels.html.edit(None, repository)
   })
 
-  ajaxGet("/:owner/:repository/issues/label/:labelId/edit")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/labels/new", labelForm)(collaboratorsOnly { (form, repository) =>
+    val labelId = createLabel(repository.owner, repository.name, form.labelName, form.color.substring(1))
+    issues.labels.html.label(
+      getLabel(repository.owner, repository.name, labelId).get,
+      // TODO futility
+      countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
+      repository,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+  })
+
+  ajaxGet("/:owner/:repository/issues/labels/:labelId/edit")(collaboratorsOnly { repository =>
     getLabel(repository.owner, repository.name, params("labelId").toInt).map { label =>
       issues.labels.html.edit(Some(label), repository)
     } getOrElse NotFound()
   })
 
-  ajaxPost("/:owner/:repository/issues/label/:labelId/edit", editForm)(collaboratorsOnly { (form, repository) =>
+  ajaxPost("/:owner/:repository/issues/labels/:labelId/edit", labelForm)(collaboratorsOnly { (form, repository) =>
     updateLabel(repository.owner, repository.name, params("labelId").toInt, form.labelName, form.color.substring(1))
-    issues.labels.html.editlist(getLabels(repository.owner, repository.name), repository)
+    issues.labels.html.label(
+      getLabel(repository.owner, repository.name, params("labelId").toInt).get,
+      // TODO futility
+      countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
+      repository,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
-  ajaxGet("/:owner/:repository/issues/label/:labelId/delete")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/labels/:labelId/delete")(collaboratorsOnly { repository =>
     deleteLabel(repository.owner, repository.name, params("labelId").toInt)
-    issues.labels.html.editlist(getLabels(repository.owner, repository.name), repository)
+    Ok()
   })
 
   /**
@@ -53,7 +70,7 @@ trait LabelsControllerBase extends ControllerBase {
    */
   private def labelName: Constraint = new Constraint(){
     override def validate(name: String, value: String, messages: Messages): Option[String] =
-      if(!value.matches("^[^,]+$")){
+      if(value.contains(',')){
         Some(s"${name} contains invalid character.")
       } else if(value.startsWith("_") || value.startsWith("-")){
         Some(s"${name} starts with invalid character.")

src/main/scala/app/PullRequestsController.scala

@@ -1,6 +1,6 @@
 package app
 
-import util.{LockUtil, CollaboratorsAuthenticator, JGitUtil, ReferrerAuthenticator, Notifier, Keys}
+import util._
 import util.Directory._
 import util.Implicits._
 import util.ControlUtil._
@@ -12,21 +12,21 @@ import scala.collection.JavaConverters._
 import org.eclipse.jgit.lib.{ObjectId, CommitBuilder, PersonIdent}
 import service.IssuesService._
 import service.PullRequestService._
-import util.JGitUtil.DiffInfo
-import service.RepositoryService.RepositoryTreeNode
-import util.JGitUtil.CommitInfo
 import org.slf4j.LoggerFactory
 import org.eclipse.jgit.merge.MergeStrategy
 import org.eclipse.jgit.errors.NoMergeBaseException
 import service.WebHookService.WebHookPayload
+import util.JGitUtil.DiffInfo
+import util.JGitUtil.CommitInfo
+
 
 class PullRequestsController extends PullRequestsControllerBase
   with RepositoryService with AccountService with IssuesService with PullRequestService with MilestonesService with LabelsService
-  with ActivityService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator
+  with CommitsService with ActivityService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator
 
 trait PullRequestsControllerBase extends ControllerBase {
   self: RepositoryService with AccountService with IssuesService with MilestonesService with LabelsService
-    with ActivityService with PullRequestService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator =>
+    with CommitsService with ActivityService with PullRequestService with WebHookService with ReferrerAuthenticator with CollaboratorsAuthenticator =>
 
   private val logger = LoggerFactory.getLogger(classOf[PullRequestsControllerBase])
 
@@ -60,11 +60,12 @@ trait PullRequestsControllerBase extends ControllerBase {
   case class MergeForm(message: String)
 
   get("/:owner/:repository/pulls")(referrersOnly { repository =>
+    val q = request.getParameter("q")
+    if(Option(q).exists(_.contains("is:issue"))){
+      redirect(s"/${repository.owner}/${repository.name}/issues?q=" + StringUtil.urlEncode(q))
+    } else {
       searchPullRequests(None, repository)
-  })
+    }
-
-  get("/:owner/:repository/pulls/:userName")(referrersOnly { repository =>
-    searchPullRequests(Some(params("userName")), repository)
   })
 
   get("/:owner/:repository/pull/:id")(referrersOnly { repository =>
@@ -78,8 +79,9 @@ trait PullRequestsControllerBase extends ControllerBase {
 
           pulls.html.pullreq(
             issue, pullreq,
-            getComments(owner, name, issueId),
+            (commits.flatten.map(commit => getCommitComments(owner, name, commit.id, true)).flatten.toList ::: getComments(owner, name, issueId))
-            getIssueLabels(owner, name, issueId.toInt),
+              .sortWith((a, b) => a.registeredDate before b.registeredDate),
+            getIssueLabels(owner, name, issueId),
             (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
             getMilestonesWithIssueCount(owner, name),
             getLabels(owner, name),
@@ -100,18 +102,18 @@ trait PullRequestsControllerBase extends ControllerBase {
         pulls.html.mergeguide(
           checkConflictInPullRequest(owner, name, pullreq.branch, pullreq.requestUserName, name, pullreq.requestBranch, issueId),
           pullreq,
-          s"${baseUrl}/git/${pullreq.requestUserName}/${pullreq.requestRepositoryName}.git")
+          s"${context.baseUrl}/git/${pullreq.requestUserName}/${pullreq.requestRepositoryName}.git")
       }
     } getOrElse NotFound
   })
 
-  get("/:owner/:repository/pull/:id/delete/:branchName")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/pull/:id/delete/*")(collaboratorsOnly { repository =>
     params("id").toIntOpt.map { issueId =>
-      val branchName = params("branchName")
+      val branchName = multiParams("splat").head
       val userName   = context.loginAccount.get.userName
       if(repository.repository.defaultBranch != branchName){
         using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
-          git.branchDelete().setBranchNames(branchName).call()
+          git.branchDelete().setForce(true).setBranchNames(branchName).call()
           recordDeleteBranchActivity(repository.owner, repository.name, userName, branchName)
         }
       }
@@ -124,7 +126,7 @@ trait PullRequestsControllerBase extends ControllerBase {
     params("id").toIntOpt.flatMap { issueId =>
       val owner = repository.owner
       val name  = repository.name
-      LockUtil.lock(s"${owner}/${name}/merge"){
+      LockUtil.lock(s"${owner}/${name}"){
         getPullRequest(owner, name, issueId).map { case (issue, pullreq) =>
           using(Git.open(getRepositoryDir(owner, name))) { git =>
             // mark issue as merged and close.
@@ -157,7 +159,7 @@ trait PullRequestsControllerBase extends ControllerBase {
             val personIdent = new PersonIdent(loginAccount.fullName, loginAccount.mailAddress)
             mergeCommit.setAuthor(personIdent)
             mergeCommit.setCommitter(personIdent)
-            mergeCommit.setMessage(s"Merge pull request #${issueId} from ${pullreq.requestUserName}/${pullreq.requestRepositoryName}\n\n" +
+            mergeCommit.setMessage(s"Merge pull request #${issueId} from ${pullreq.requestUserName}/${pullreq.requestBranch}\n\n" +
                                    form.message)
 
             // insertObject and got mergeCommit Object Id
@@ -177,12 +179,18 @@ trait PullRequestsControllerBase extends ControllerBase {
             val (commits, _) = getRequestCompareInfo(owner, name, pullreq.commitIdFrom,
               pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.commitIdTo)
 
+            // close issue by content of pull request
+            val defaultBranch = getRepository(owner, name, context.baseUrl).get.repository.defaultBranch
+            if(pullreq.branch == defaultBranch){
               commits.flatten.foreach { commit =>
-              if(!existsCommitId(owner, name, commit.id)){
+                closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name)
-                insertCommitId(owner, name, commit.id)
               }
+              issue.content match {
+                case Some(content) => closeIssuesFromMessage(content, loginAccount.userName, owner, name)
+                case _ =>
+              }
+              closeIssuesFromMessage(form.message, loginAccount.userName, owner, name)
             }
-
             // call web hook
             getWebHookURLs(owner, name) match {
               case webHookURLs if(webHookURLs.nonEmpty) =>
@@ -195,7 +203,7 @@ trait PullRequestsControllerBase extends ControllerBase {
 
             // notifications
             Notifier().toNotify(repository, issueId, "merge"){
-              Notifier.msgStatus(s"${baseUrl}/${owner}/${name}/pull/${issueId}")
+              Notifier.msgStatus(s"${context.baseUrl}/${owner}/${name}/pull/${issueId}")
             }
 
             redirect(s"/${owner}/${name}/pull/${issueId}")
@@ -208,7 +216,7 @@ trait PullRequestsControllerBase extends ControllerBase {
   get("/:owner/:repository/compare")(referrersOnly { forkedRepository =>
     (forkedRepository.repository.originUserName, forkedRepository.repository.originRepositoryName) match {
       case (Some(originUserName), Some(originRepositoryName)) => {
-        getRepository(originUserName, originRepositoryName, baseUrl).map { originRepository =>
+        getRepository(originUserName, originRepositoryName, context.baseUrl).map { originRepository =>
           using(
             Git.open(getRepositoryDir(originUserName, originRepositoryName)),
             Git.open(getRepositoryDir(forkedRepository.owner, forkedRepository.name))
@@ -216,16 +224,16 @@ trait PullRequestsControllerBase extends ControllerBase {
             val oldBranch = JGitUtil.getDefaultBranch(oldGit, originRepository).get._2
             val newBranch = JGitUtil.getDefaultBranch(newGit, forkedRepository).get._2
 
-            redirect(s"${context.path}/${forkedRepository.owner}/${forkedRepository.name}/compare/${originUserName}:${oldBranch}...${newBranch}")
+            redirect(s"/${forkedRepository.owner}/${forkedRepository.name}/compare/${originUserName}:${oldBranch}...${newBranch}")
           }
         } getOrElse NotFound
       }
       case _ => {
         using(Git.open(getRepositoryDir(forkedRepository.owner, forkedRepository.name))){ git =>
           JGitUtil.getDefaultBranch(git, forkedRepository).map { case (_, defaultBranch) =>
-            redirect(s"${context.path}/${forkedRepository.owner}/${forkedRepository.name}/compare/${defaultBranch}...${defaultBranch}")
+            redirect(s"/${forkedRepository.owner}/${forkedRepository.name}/compare/${defaultBranch}...${defaultBranch}")
           } getOrElse {
-            redirect(s"${context.path}/${forkedRepository.owner}/${forkedRepository.name}")
+            redirect(s"/${forkedRepository.owner}/${forkedRepository.name}")
           }
         }
       }
@@ -245,7 +253,7 @@ trait PullRequestsControllerBase extends ControllerBase {
           getForkedRepositories(forkedRepository.owner, forkedRepository.name).find(_._1 == originOwner).map(_._2)
         }
       };
-      originRepository <- getRepository(originOwner, originRepositoryName, baseUrl)
+      originRepository <- getRepository(originOwner, originRepositoryName, context.baseUrl)
     ) yield {
       using(
         Git.open(getRepositoryDir(originRepository.owner, originRepository.name)),
@@ -254,7 +262,7 @@ trait PullRequestsControllerBase extends ControllerBase {
         val originBranch = JGitUtil.getDefaultBranch(oldGit, originRepository, tmpOriginBranch).get._2
         val forkedBranch = JGitUtil.getDefaultBranch(newGit, forkedRepository, tmpForkedBranch).get._2
 
-        val forkedId = getForkedCommitId(oldGit, newGit,
+        val forkedId = JGitUtil.getForkedCommitId(oldGit, newGit,
           originRepository.owner, originRepository.name, originBranch,
           forkedRepository.owner, forkedRepository.name, forkedBranch)
 
@@ -272,6 +280,7 @@ trait PullRequestsControllerBase extends ControllerBase {
             case (Some(userName), Some(repositoryName)) => (userName, repositoryName) :: getForkedRepositories(userName, repositoryName)
             case _ => (forkedRepository.owner, forkedRepository.name) :: getForkedRepositories(forkedRepository.owner, forkedRepository.name)
           },
+          commits.flatten.map(commit => getCommitComments(forkedRepository.owner, forkedRepository.name, commit.id, false)).flatten.toList,
           originBranch,
           forkedBranch,
           oldId.getName,
@@ -297,7 +306,7 @@ trait PullRequestsControllerBase extends ControllerBase {
           getForkedRepositories(forkedRepository.owner, forkedRepository.name).find(_._1 == originOwner).map(_._2)
         }
       };
-      originRepository <- getRepository(originOwner, originRepositoryName, baseUrl)
+      originRepository <- getRepository(originOwner, originRepositoryName, context.baseUrl)
     ) yield {
       using(
         Git.open(getRepositoryDir(originRepository.owner, originRepository.name)),
@@ -350,7 +359,7 @@ trait PullRequestsControllerBase extends ControllerBase {
 
     // notifications
     Notifier().toNotify(repository, issueId, form.content.getOrElse("")){
-      Notifier.msgPullRequest(s"${baseUrl}/${repository.owner}/${repository.name}/pull/${issueId}")
+      Notifier.msgPullRequest(s"${context.baseUrl}/${repository.owner}/${repository.name}/pull/${issueId}")
     }
 
     redirect(s"/${repository.owner}/${repository.name}/pull/${issueId}")
@@ -361,7 +370,7 @@ trait PullRequestsControllerBase extends ControllerBase {
    */
   private def checkConflict(userName: String, repositoryName: String, branch: String,
                             requestUserName: String, requestRepositoryName: String, requestBranch: String): Boolean = {
-    LockUtil.lock(s"${userName}/${repositoryName}/merge-check"){
+    LockUtil.lock(s"${userName}/${repositoryName}"){
       using(Git.open(getRepositoryDir(requestUserName, requestRepositoryName))) { git =>
         val remoteRefName = s"refs/heads/${branch}"
         val tmpRefName = s"refs/merge-check/${userName}/${branch}"
@@ -397,7 +406,7 @@ trait PullRequestsControllerBase extends ControllerBase {
   private def checkConflictInPullRequest(userName: String, repositoryName: String, branch: String,
                                          requestUserName: String, requestRepositoryName: String, requestBranch: String,
                                          issueId: Int): Boolean = {
-    LockUtil.lock(s"${userName}/${repositoryName}/merge") {
+    LockUtil.lock(s"${userName}/${repositoryName}") {
       using(Git.open(getRepositoryDir(userName, repositoryName))) { git =>
         // merge
         val merger = MergeStrategy.RECURSIVE.newMerger(git.getRepository, true)
@@ -426,24 +435,8 @@ trait PullRequestsControllerBase extends ControllerBase {
       (defaultOwner, value)
     }
 
-  /**
-   * Extracts all repository names from [[service.RepositoryService.RepositoryTreeNode]] as flat list.
-   */
-  private def getRepositoryNames(node: RepositoryTreeNode): List[String] =
-    node.owner :: node.children.map { child => getRepositoryNames(child) }.flatten
-
-  /**
-   * Returns the identifier of the root commit (or latest merge commit) of the specified branch.
-   */
-  private def getForkedCommitId(oldGit: Git, newGit: Git, userName: String, repositoryName: String, branch: String,
-      requestUserName: String, requestRepositoryName: String, requestBranch: String): String =
-    JGitUtil.getCommitLogs(newGit, requestBranch, true){ commit =>
-      existsCommitId(userName, repositoryName, commit.getName) && JGitUtil.getBranchesOfCommit(oldGit, commit.getName).contains(branch)
-    }.head.id
-
   private def getRequestCompareInfo(userName: String, repositoryName: String, branch: String,
-      requestUserName: String, requestRepositoryName: String, requestCommitId: String): (Seq[Seq[CommitInfo]], Seq[DiffInfo]) = {
+      requestUserName: String, requestRepositoryName: String, requestCommitId: String): (Seq[Seq[CommitInfo]], Seq[DiffInfo]) =
-
     using(
       Git.open(getRepositoryDir(userName, repositoryName)),
       Git.open(getRepositoryDir(requestUserName, requestRepositoryName))
@@ -454,18 +447,16 @@ trait PullRequestsControllerBase extends ControllerBase {
       val commits = newGit.log.addRange(oldId, newId).call.iterator.asScala.map { revCommit =>
         new CommitInfo(revCommit)
       }.toList.splitWith { (commit1, commit2) =>
-        view.helpers.date(commit1.time) == view.helpers.date(commit2.time)
+        view.helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
       }
 
       val diffs = JGitUtil.getDiffs(newGit, oldId.getName, newId.getName, true)
 
       (commits, diffs)
     }
-  }
 
   private def searchPullRequests(userName: Option[String], repository: RepositoryService.RepositoryInfo) =
     defining(repository.owner, repository.name){ case (owner, repoName) =>
-      val filterUser = userName.map { x => Map("created_by" -> x) } getOrElse Map("all" -> "")
       val page       = IssueSearchCondition.page(request)
       val sessionKey = Keys.Session.Pulls(owner, repoName)
 
@@ -475,14 +466,15 @@ trait PullRequestsControllerBase extends ControllerBase {
         else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
       )
 
-      pulls.html.list(
+      issues.html.list(
-        searchIssue(condition, filterUser, true, (page - 1) * PullRequestLimit, PullRequestLimit, owner -> repoName),
+        "pulls",
-        getPullRequestCountGroupByUser(condition.state == "closed", owner, Some(repoName)),
+        searchIssue(condition, true, (page - 1) * PullRequestLimit, PullRequestLimit, owner -> repoName),
-        userName,
         page,
-        countIssue(condition.copy(state = "open"  ), filterUser, true, owner -> repoName),
+        (getCollaborators(owner, repoName) :+ owner).sorted,
-        countIssue(condition.copy(state = "closed"), filterUser, true, owner -> repoName),
+        getMilestones(owner, repoName),
-        countIssue(condition, Map.empty, true, owner -> repoName),
+        getLabels(owner, repoName),
+        countIssue(condition.copy(state = "open"  ), true, owner -> repoName),
+        countIssue(condition.copy(state = "closed"), true, owner -> repoName),
         condition,
         repository,
         hasWritePermission(owner, repoName, context.loginAccount))

src/main/scala/app/RepositorySettingsController.scala

@@ -2,7 +2,8 @@ package app
 
 import service._
 import util.Directory._
-import util.{UsersAuthenticator, OwnerAuthenticator}
+import util.Implicits._
+import util.{LockUtil, UsersAuthenticator, OwnerAuthenticator}
 import jp.sf.amateras.scalatra.forms._
 import org.apache.commons.io.FileUtils
 import org.scalatra.i18n.Messages
@@ -10,6 +11,7 @@ import service.WebHookService.WebHookPayload
 import util.JGitUtil.CommitInfo
 import util.ControlUtil._
 import org.eclipse.jgit.api.Git
+import org.eclipse.jgit.lib.Constants
 
 class RepositorySettingsController extends RepositorySettingsControllerBase
   with RepositoryService with AccountService with WebHookService
@@ -68,11 +70,12 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Save the repository options.
    */
   post("/:owner/:repository/settings/options", optionsForm)(ownerOnly { (form, repository) =>
+    val defaultBranch = if(repository.branchList.isEmpty) "master" else form.defaultBranch
     saveRepositoryOptions(
       repository.owner,
       repository.name,
       form.description,
-      form.defaultBranch,
+      defaultBranch,
       repository.repository.parentUserName.map { _ =>
         repository.repository.isPrivate
       } getOrElse form.isPrivate
@@ -90,6 +93,10 @@ trait RepositorySettingsControllerBase extends ControllerBase {
         FileUtils.moveDirectory(dir, getWikiRepositoryDir(repository.owner, form.repositoryName))
       }
     }
+    // Change repository HEAD
+    using(Git.open(getRepositoryDir(repository.owner, form.repositoryName))) { git =>
+      git.getRepository.updateRef(Constants.HEAD, true).link(Constants.R_HEADS + defaultBranch)
+    }
     flash += "info" -> "Repository settings has been updated."
     redirect(s"/${repository.owner}/${form.repositoryName}/settings/options")
   })
@@ -128,7 +135,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Display the web hook page.
    */
   get("/:owner/:repository/settings/hooks")(ownerOnly { repository =>
-    settings.html.hooks(getWebHookURLs(repository.owner, repository.name), repository, flash.get("info"))
+    settings.html.hooks(getWebHookURLs(repository.owner, repository.name), flash.get("url"), repository, flash.get("info"))
   })
 
   /**
@@ -150,7 +157,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
   /**
    * Send the test request to registered web hook URLs.
    */
-  get("/:owner/:repository/settings/hooks/test")(ownerOnly { repository =>
+  post("/:owner/:repository/settings/hooks/test", webHookForm)(ownerOnly { (form, repository) =>
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       import scala.collection.JavaConverters._
       val commits = git.log
@@ -158,15 +165,13 @@ trait RepositorySettingsControllerBase extends ControllerBase {
         .setMaxCount(3)
         .call.iterator.asScala.map(new CommitInfo(_))
 
-      getWebHookURLs(repository.owner, repository.name) match {
+      getAccountByUserName(repository.owner).foreach { ownerAccount =>
-        case webHookURLs if(webHookURLs.nonEmpty) =>
+        callWebHook(repository.owner, repository.name,
-          for(ownerAccount <- getAccountByUserName(repository.owner)){
+          List(model.WebHook(repository.owner, repository.name, form.url)),
-            callWebHook(repository.owner, repository.name, webHookURLs,
+          WebHookPayload(git, ownerAccount, "refs/heads/" + repository.repository.defaultBranch, repository, commits.toList, ownerAccount)
-              WebHookPayload(git, ownerAccount, "refs/heads/" + repository.repository.defaultBranch, repository, commits.toList, ownerAccount))
+        )
       }
-        case _ =>
+      flash += "url"  -> form.url
-      }
-
       flash += "info" -> "Test payload deployed!"
     }
     redirect(s"/${repository.owner}/${repository.name}/settings/hooks")
@@ -185,6 +190,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
   post("/:owner/:repository/settings/transfer", transferForm)(ownerOnly { (form, repository) =>
     // Change repository owner
     if(repository.owner != form.newOwner){
+      LockUtil.lock(s"${repository.owner}/${repository.name}"){
         // Update database
         renameRepository(repository.owner, repository.name, form.newOwner, repository.name)
         // Move git repository
@@ -196,6 +202,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
           FileUtils.moveDirectory(dir, getWikiRepositoryDir(form.newOwner, repository.name))
         }
       }
+    }
     redirect(s"/${form.newOwner}/${repository.name}")
   })
 
@@ -203,12 +210,13 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Delete the repository.
    */
   post("/:owner/:repository/settings/delete")(ownerOnly { repository =>
+    LockUtil.lock(s"${repository.owner}/${repository.name}"){
       deleteRepository(repository.owner, repository.name)
 
       FileUtils.deleteDirectory(getRepositoryDir(repository.owner, repository.name))
       FileUtils.deleteDirectory(getWikiRepositoryDir(repository.owner, repository.name))
       FileUtils.deleteDirectory(getTemporaryDir(repository.owner, repository.name))
-
+    }
     redirect(s"/${repository.owner}")
   })
 

src/main/scala/app/RepositoryViewerController.scala

@@ -1,27 +1,90 @@
 package app
 
+import _root_.util.JGitUtil.CommitInfo
 import util.Directory._
 import util.Implicits._
-import util.ControlUtil._
+import _root_.util.ControlUtil._
 import _root_.util._
 import service._
 import org.scalatra._
 import java.io.File
-import org.eclipse.jgit.api.Git
+
+import org.eclipse.jgit.api.{ArchiveCommand, Git}
+import org.eclipse.jgit.archive.{TgzFormat, ZipFormat}
 import org.eclipse.jgit.lib._
 import org.apache.commons.io.FileUtils
 import org.eclipse.jgit.treewalk._
-import java.util.zip.{ZipEntry, ZipOutputStream}
+import jp.sf.amateras.scalatra.forms._
-import scala.Some
+import org.eclipse.jgit.dircache.DirCache
+import org.eclipse.jgit.revwalk.RevCommit
+import service.WebHookService.WebHookPayload
 
 class RepositoryViewerController extends RepositoryViewerControllerBase
-  with RepositoryService with AccountService with ActivityService with ReferrerAuthenticator with CollaboratorsAuthenticator
+  with RepositoryService with AccountService with ActivityService with IssuesService with WebHookService with CommitsService
+  with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator
+
 
 /**
  * The repository viewer.
  */
 trait RepositoryViewerControllerBase extends ControllerBase {
-  self: RepositoryService with AccountService with ActivityService with ReferrerAuthenticator with CollaboratorsAuthenticator =>
+  self: RepositoryService with AccountService with ActivityService with IssuesService with WebHookService with CommitsService
+    with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator =>
+
+  ArchiveCommand.registerFormat("zip", new ZipFormat)
+  ArchiveCommand.registerFormat("tar.gz", new TgzFormat)
+
+  case class EditorForm(
+    branch: String,
+    path: String,
+    content: String,
+    message: Option[String],
+    charset: String,
+    lineSeparator: String,
+    newFileName: String,
+    oldFileName: Option[String]
+  )
+
+  case class DeleteForm(
+    branch: String,
+    path: String,
+    message: Option[String],
+    fileName: String
+  )
+
+  case class CommentForm(
+    fileName: Option[String],
+    oldLineNumber: Option[Int],
+    newLineNumber: Option[Int],
+    content: String,
+    pullRequest: Boolean
+  )
+
+  val editorForm = mapping(
+    "branch"        -> trim(label("Branch", text(required))),
+    "path"          -> trim(label("Path", text())),
+    "content"       -> trim(label("Content", text(required))),
+    "message"       -> trim(label("Message", optional(text()))),
+    "charset"       -> trim(label("Charset", text(required))),
+    "lineSeparator" -> trim(label("Line Separator", text(required))),
+    "newFileName"   -> trim(label("Filename", text(required))),
+    "oldFileName"   -> trim(label("Old filename", optional(text())))
+  )(EditorForm.apply)
+
+  val deleteForm = mapping(
+    "branch"   -> trim(label("Branch", text(required))),
+    "path"     -> trim(label("Path", text())),
+    "message"  -> trim(label("Message", optional(text()))),
+    "fileName" -> trim(label("Filename", text(required)))
+  )(DeleteForm.apply)
+
+  val commentForm = mapping(
+    "fileName"      -> trim(label("Filename", optional(text()))),
+    "oldLineNumber" -> trim(label("Old line number", optional(number()))),
+    "newLineNumber" -> trim(label("New line number", optional(number()))),
+    "content"       -> trim(label("Content", text(required))),
+    "pullRequest"   -> trim(label("In pull request", boolean()))
+  )(CommentForm.apply)
 
   /**
    * Returns converted HTML from Markdown for preview.
@@ -30,7 +93,9 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     contentType = "text/html"
     view.helpers.markdown(params("content"), repository,
       params("enableWikiLink").toBoolean,
-      params("enableRefsLink").toBoolean)
+      params("enableRefsLink").toBoolean,
+      params("enableTaskList").toBoolean,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
   /**
@@ -64,13 +129,77 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         case Right((logs, hasNext)) =>
           repo.html.commits(if(path.isEmpty) Nil else path.split("/").toList, branchName, repository,
             logs.splitWith{ (commit1, commit2) =>
-              view.helpers.date(commit1.time) == view.helpers.date(commit2.time)
+              view.helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
-            }, page, hasNext)
+            }, page, hasNext, hasWritePermission(repository.owner, repository.name, context.loginAccount))
         case Left(_) => NotFound
       }
     }
   })
 
+  get("/:owner/:repository/new/*")(collaboratorsOnly { repository =>
+    val (branch, path) = splitPath(repository, multiParams("splat").head)
+    repo.html.editor(branch, repository, if(path.length == 0) Nil else path.split("/").toList,
+      None, JGitUtil.ContentInfo("text", None, Some("UTF-8")))
+  })
+
+  get("/:owner/:repository/edit/*")(collaboratorsOnly { repository =>
+    val (branch, path) = splitPath(repository, multiParams("splat").head)
+
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+      val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(branch))
+
+      getPathObjectId(git, path, revCommit).map { objectId =>
+        val paths = path.split("/")
+        repo.html.editor(branch, repository, paths.take(paths.size - 1).toList, Some(paths.last),
+          JGitUtil.getContentInfo(git, path, objectId))
+      } getOrElse NotFound
+    }
+  })
+
+  get("/:owner/:repository/remove/*")(collaboratorsOnly { repository =>
+    val (branch, path) = splitPath(repository, multiParams("splat").head)
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+      val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(branch))
+
+      getPathObjectId(git, path, revCommit).map { objectId =>
+        val paths = path.split("/")
+        repo.html.delete(branch, repository, paths.take(paths.size - 1).toList, paths.last,
+          JGitUtil.getContentInfo(git, path, objectId))
+      } getOrElse NotFound
+    }
+  })
+
+  post("/:owner/:repository/create", editorForm)(collaboratorsOnly { (form, repository) =>
+    commitFile(repository, form.branch, form.path, Some(form.newFileName), None,
+      StringUtil.convertLineSeparator(form.content, form.lineSeparator), form.charset,
+      form.message.getOrElse(s"Create ${form.newFileName}"))
+
+    redirect(s"/${repository.owner}/${repository.name}/blob/${form.branch}/${
+      if(form.path.length == 0) form.newFileName else s"${form.path}/${form.newFileName}"
+    }")
+  })
+
+  post("/:owner/:repository/update", editorForm)(collaboratorsOnly { (form, repository) =>
+    commitFile(repository, form.branch, form.path, Some(form.newFileName), form.oldFileName,
+      StringUtil.convertLineSeparator(form.content, form.lineSeparator), form.charset,
+      if(form.oldFileName.exists(_ == form.newFileName)){
+        form.message.getOrElse(s"Update ${form.newFileName}")
+      } else {
+        form.message.getOrElse(s"Rename ${form.oldFileName.get} to ${form.newFileName}")
+      })
+
+    redirect(s"/${repository.owner}/${repository.name}/blob/${form.branch}/${
+      if(form.path.length == 0) form.newFileName else s"${form.path}/${form.newFileName}"
+    }")
+  })
+
+  post("/:owner/:repository/remove", deleteForm)(collaboratorsOnly { (form, repository) =>
+    commitFile(repository, form.branch, form.path, None, Some(form.fileName), "", "",
+      form.message.getOrElse(s"Delete ${form.fileName}"))
+
+    redirect(s"/${repository.owner}/${repository.name}/tree/${form.branch}${if(form.path.length == 0) "" else form.path}")
+  })
+
   /**
    * Displays the file content of the specified branch or commit.
    */
@@ -80,46 +209,19 @@ trait RepositoryViewerControllerBase extends ControllerBase {
 
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(id))
-
+      val lastModifiedCommit = JGitUtil.getLastModifiedCommit(git, revCommit, path)
-      @scala.annotation.tailrec
+      getPathObjectId(git, path, revCommit).map { objectId =>
-      def getPathObjectId(path: String, walk: TreeWalk): ObjectId = walk.next match {
-        case true if(walk.getPathString == path) => walk.getObjectId(0)
-        case true => getPathObjectId(path, walk)
-      }
-
-      val objectId = using(new TreeWalk(git.getRepository)){ treeWalk =>
-        treeWalk.addTree(revCommit.getTree)
-        treeWalk.setRecursive(true)
-        getPathObjectId(path, treeWalk)
-      }
-
         if(raw){
           // Download
-        defining(JGitUtil.getContent(git, objectId, false).get){ bytes =>
+          defining(JGitUtil.getContentFromId(git, objectId, false).get){ bytes =>
             contentType = FileUtil.getContentType(path, bytes)
             bytes
           }
         } else {
-        // Viewer
+          repo.html.blob(id, repository, path.split("/").toList, JGitUtil.getContentInfo(git, path, objectId),
-        val large  = FileUtil.isLarge(git.getRepository.getObjectDatabase.open(objectId).getSize)
+            new JGitUtil.CommitInfo(lastModifiedCommit), hasWritePermission(repository.owner, repository.name, context.loginAccount))
-        val viewer = if(FileUtil.isImage(path)) "image" else if(large) "large" else "other"
-        val bytes  = if(viewer == "other") JGitUtil.getContent(git, objectId, false) else None
-
-        val content = if(viewer == "other"){
-          if(bytes.isDefined && FileUtil.isText(bytes.get)){
-            // text
-            JGitUtil.ContentInfo("text", bytes.map(StringUtil.convertFromByteArray))
-          } else {
-            // binary
-            JGitUtil.ContentInfo("binary", None)
-          }
-        } else {
-          // image or large
-          JGitUtil.ContentInfo(viewer, None)
-        }
-
-        repo.html.blob(id, repository, path.split("/").toList, content, new JGitUtil.CommitInfo(revCommit))
         }
+      } getOrElse NotFound
     }
   })
 
@@ -135,12 +237,82 @@ trait RepositoryViewerControllerBase extends ControllerBase {
           repo.html.commit(id, new JGitUtil.CommitInfo(revCommit),
             JGitUtil.getBranchesOfCommit(git, revCommit.getName),
             JGitUtil.getTagsOfCommit(git, revCommit.getName),
-            repository, diffs, oldCommitId)
+            getCommitComments(repository.owner, repository.name, id, false),
+            repository, diffs, oldCommitId, hasWritePermission(repository.owner, repository.name, context.loginAccount))
         }
       }
     }
   })
 
+  post("/:owner/:repository/commit/:id/comment/new", commentForm)(readableUsersOnly { (form, repository) =>
+    val id = params("id")
+    createCommitComment(repository.owner, repository.name, id, context.loginAccount.get.userName, form.content,
+      form.fileName, form.oldLineNumber, form.newLineNumber, form.pullRequest)
+    recordCommentCommitActivity(repository.owner, repository.name, context.loginAccount.get.userName, id, form.content)
+    redirect(s"/${repository.owner}/${repository.name}/commit/${id}")
+  })
+
+  ajaxGet("/:owner/:repository/commit/:id/comment/_form")(readableUsersOnly { repository =>
+    val id            = params("id")
+    val fileName      = params.get("fileName")
+    val oldLineNumber = params.get("oldLineNumber") flatMap {b => Some(b.toInt)}
+    val newLineNumber = params.get("newLineNumber") flatMap {b => Some(b.toInt)}
+    val pullRequest   = params.get("pullRequest")
+    repo.html.commentform(
+      commitId = id,
+      fileName, oldLineNumber, newLineNumber, pullRequest.map(_.toBoolean).getOrElse(false),
+      hasWritePermission = hasWritePermission(repository.owner, repository.name, context.loginAccount),
+      repository = repository
+    )
+  })
+
+  ajaxPost("/:owner/:repository/commit/:id/comment/_data/new", commentForm)(readableUsersOnly { (form, repository) =>
+    val id = params("id")
+    val commentId = createCommitComment(repository.owner, repository.name, id, context.loginAccount.get.userName,
+      form.content, form.fileName, form.oldLineNumber, form.newLineNumber, form.pullRequest)
+    recordCommentCommitActivity(repository.owner, repository.name, context.loginAccount.get.userName, id, form.content)
+    helper.html.commitcomment(getCommitComment(repository.owner, repository.name, commentId.toString).get,
+      hasWritePermission(repository.owner, repository.name, context.loginAccount), repository)
+  })
+
+  ajaxGet("/:owner/:repository/commit_comments/_data/:id")(readableUsersOnly { repository =>
+    getCommitComment(repository.owner, repository.name, params("id")) map { x =>
+      if(isEditable(x.userName, x.repositoryName, x.commentedUserName)){
+        params.get("dataType") collect {
+          case t if t == "html" => repo.html.editcomment(
+            x.content, x.commentId, x.userName, x.repositoryName)
+        } getOrElse {
+          contentType = formats("json")
+          org.json4s.jackson.Serialization.write(
+            Map("content" -> view.Markdown.toHtml(x.content,
+              repository, false, true, true, isEditable(x.userName, x.repositoryName, x.commentedUserName))
+            ))
+        }
+      } else Unauthorized
+    } getOrElse NotFound
+  })
+
+  ajaxPost("/:owner/:repository/commit_comments/edit/:id", commentForm)(readableUsersOnly { (form, repository) =>
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      getCommitComment(owner, name, params("id")).map { comment =>
+        if(isEditable(owner, name, comment.commentedUserName)){
+          updateCommitComment(comment.commentId, form.content)
+          redirect(s"/${owner}/${name}/commit_comments/_data/${comment.commentId}")
+        } else Unauthorized
+      } getOrElse NotFound
+    }
+  })
+
+  ajaxPost("/:owner/:repository/commit_comments/delete/:id")(readableUsersOnly { repository =>
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      getCommitComment(owner, name, params("id")).map { comment =>
+        if(isEditable(owner, name, comment.commentedUserName)){
+          Ok(deleteCommitComment(comment.commentId))
+        } else Unauthorized
+      } getOrElse NotFound
+    }
+  })
+
   /**
    * Displays branches.
    */
@@ -155,15 +327,33 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
   })
 
+  /**
+   * Creates a branch.
+   */
+  post("/:owner/:repository/branches")(collaboratorsOnly { repository =>
+    val newBranchName = params.getOrElse("new", halt(400))
+    val fromBranchName = params.getOrElse("from", halt(400))
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+      JGitUtil.createBranch(git, fromBranchName, newBranchName)
+    } match {
+      case Right(message) =>
+        flash += "info" -> message
+        redirect(s"/${repository.owner}/${repository.name}/tree/${StringUtil.urlEncode(newBranchName).replace("%2F", "/")}")
+      case Left(message) =>
+        flash += "error" -> message
+        redirect(s"/${repository.owner}/${repository.name}/tree/${fromBranchName}")
+    }
+  })
+
   /**
    * Deletes branch.
    */
-  get("/:owner/:repository/delete/:branchName")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/delete/*")(collaboratorsOnly { repository =>
-    val branchName = params("branchName")
+    val branchName = multiParams("splat").head
     val userName   = context.loginAccount.get.userName
     if(repository.repository.defaultBranch != branchName){
       using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
-        git.branchDelete().setBranchNames(branchName).call()
+        git.branchDelete().setForce(true).setBranchNames(branchName).call()
         recordDeleteBranchActivity(repository.owner, repository.name, userName, branchName)
       }
     }
@@ -180,51 +370,13 @@ trait RepositoryViewerControllerBase extends ControllerBase {
   /**
    * Download repository contents as an archive.
    */
-  get("/:owner/:repository/archive/:name")(referrersOnly { repository =>
+  get("/:owner/:repository/archive/*")(referrersOnly { repository =>
-    val name = params("name")
+    multiParams("splat").head match {
-
+      case name if name.endsWith(".zip") =>
-    if(name.endsWith(".zip")){
+        archiveRepository(name, ".zip", repository)
-      val revision = name.replaceFirst("\\.zip$", "")
+      case name if name.endsWith(".tar.gz") =>
-      val workDir = getDownloadWorkDir(repository.owner, repository.name, session.getId)
+        archiveRepository(name, ".tar.gz", repository)
-      if(workDir.exists){
+      case _ => BadRequest
-        FileUtils.deleteDirectory(workDir)
-      }
-      workDir.mkdirs
-
-      val zipFile = new File(workDir, repository.name + "-" +
-        (if(revision.length == 40) revision.substring(0, 10) else revision) + ".zip")
-
-      using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
-        val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(revision))
-        using(new TreeWalk(git.getRepository)){ walk =>
-          val reader   = walk.getObjectReader
-          val objectId = new MutableObjectId
-
-          using(new ZipOutputStream(new java.io.FileOutputStream(zipFile))){ out =>
-            walk.addTree(revCommit.getTree)
-            walk.setRecursive(true)
-
-            while(walk.next){
-              val name = walk.getPathString
-              val mode = walk.getFileMode(0)
-              if(mode != FileMode.TREE){
-                walk.getObjectId(objectId, 0)
-                val entry = new ZipEntry(name)
-                val loader = reader.open(objectId)
-                entry.setSize(loader.getSize)
-                out.putNextEntry(entry)
-                loader.copyTo(out)
-              }
-            }
-          }
-        }
-      }
-
-      contentType = "application/octet-stream"
-      response.setHeader("Content-Disposition", s"attachment; filename=${zipFile.getName}")
-      zipFile
-    } else {
-      BadRequest
     }
   })
 
@@ -233,7 +385,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       getRepository(
         repository.repository.originUserName.getOrElse(repository.owner),
         repository.repository.originRepositoryName.getOrElse(repository.name),
-        baseUrl),
+        context.baseUrl),
       getForkedRepositories(
         repository.repository.originUserName.getOrElse(repository.owner),
         repository.repository.originRepositoryName.getOrElse(repository.name)),
@@ -245,13 +397,13 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       case branch if(path == branch || path.startsWith(branch + "/")) => branch
     } orElse repository.tags.collectFirst {
       case tag if(path == tag.name || path.startsWith(tag.name + "/")) => tag.name
-    } orElse Some(path.split("/")(0)) get
+    } getOrElse path.split("/")(0)
 
-    (id, path.substring(id.length).replaceFirst("^/", ""))
+    (id, path.substring(id.length).stripPrefix("/"))
   }
 
 
-  private val readmeFiles = Seq("readme.md", "readme.markdown")
+  private val readmeFiles = view.helpers.renderableSuffixes.map(suffix => s"readme${suffix}") ++ Seq("readme.txt", "readme")
 
   /**
    * Provides HTML of the file list.
@@ -263,30 +415,139 @@ trait RepositoryViewerControllerBase extends ControllerBase {
    */
   private def fileList(repository: RepositoryService.RepositoryInfo, revstr: String = "", path: String = ".") = {
     if(repository.commitCount == 0){
-      repo.html.guide(repository)
+      repo.html.guide(repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
     } else {
       using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
-        val revisions = Seq(if(revstr.isEmpty) repository.repository.defaultBranch else revstr, repository.branchList.head)
         // get specified commit
         JGitUtil.getDefaultBranch(git, repository, revstr).map { case (objectId, revision) =>
-          defining(JGitUtil.getRevCommitFromId(git, objectId)){ revCommit =>
+          defining(JGitUtil.getRevCommitFromId(git, objectId)) { revCommit =>
+            val lastModifiedCommit = if(path == ".") revCommit else JGitUtil.getLastModifiedCommit(git, revCommit, path)
             // get files
             val files = JGitUtil.getFileList(git, revision, path)
+            val parentPath = if (path == ".") Nil else path.split("/").toList
             // process README.md or README.markdown
             val readme = files.find { file =>
               readmeFiles.contains(file.name.toLowerCase)
             }.map { file =>
-              file -> StringUtil.convertFromByteArray(JGitUtil.getContent(Git.open(getRepositoryDir(repository.owner, repository.name)), file.id, true).get)
+              val path = (file.name :: parentPath.reverse).reverse
+              path -> StringUtil.convertFromByteArray(JGitUtil.getContentFromId(
+                Git.open(getRepositoryDir(repository.owner, repository.name)), file.id, true).get)
             }
 
             repo.html.files(revision, repository,
               if(path == ".") Nil else path.split("/").toList, // current path
-              new JGitUtil.CommitInfo(revCommit), // latest commit
+              new JGitUtil.CommitInfo(lastModifiedCommit), // last modified commit
-              files, readme)
+              files, readme, hasWritePermission(repository.owner, repository.name, context.loginAccount),
+              flash.get("info"), flash.get("error"))
           }
         } getOrElse NotFound
       }
     }
   }
 
+  private def commitFile(repository: service.RepositoryService.RepositoryInfo,
+                         branch: String, path: String, newFileName: Option[String], oldFileName: Option[String],
+                         content: String, charset: String, message: String) = {
+
+    val newPath = newFileName.map { newFileName => if(path.length == 0) newFileName else s"${path}/${newFileName}" }
+    val oldPath = oldFileName.map { oldFileName => if(path.length == 0) oldFileName else s"${path}/${oldFileName}" }
+
+    LockUtil.lock(s"${repository.owner}/${repository.name}"){
+      using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+        val loginAccount = context.loginAccount.get
+        val builder  = DirCache.newInCore.builder()
+        val inserter = git.getRepository.newObjectInserter()
+        val headName = s"refs/heads/${branch}"
+        val headTip  = git.getRepository.resolve(headName)
+
+        JGitUtil.processTree(git, headTip){ (path, tree) =>
+          if(!newPath.exists(_ == path) && !oldPath.exists(_ == path)){
+            builder.add(JGitUtil.createDirCacheEntry(path, tree.getEntryFileMode, tree.getEntryObjectId))
+          }
+        }
+
+        newPath.foreach { newPath =>
+          builder.add(JGitUtil.createDirCacheEntry(newPath, FileMode.REGULAR_FILE,
+            inserter.insert(Constants.OBJ_BLOB, content.getBytes(charset))))
+        }
+        builder.finish()
+
+        val commitId = JGitUtil.createNewCommit(git, inserter, headTip, builder.getDirCache.writeTree(inserter),
+          headName, loginAccount.fullName, loginAccount.mailAddress, message)
+
+        inserter.flush()
+        inserter.release()
+
+        // update refs
+        val refUpdate = git.getRepository.updateRef(headName)
+        refUpdate.setNewObjectId(commitId)
+        refUpdate.setForceUpdate(false)
+        refUpdate.setRefLogIdent(new PersonIdent(loginAccount.fullName, loginAccount.mailAddress))
+        //refUpdate.setRefLogMessage("merged", true)
+        refUpdate.update()
+
+        // record activity
+        recordPushActivity(repository.owner, repository.name, loginAccount.userName, branch,
+          List(new CommitInfo(JGitUtil.getRevCommitFromId(git, commitId))))
+
+        // close issue by commit message
+        closeIssuesFromMessage(message, loginAccount.userName, repository.owner, repository.name)
+
+        // call web hook
+        val commit = new JGitUtil.CommitInfo(JGitUtil.getRevCommitFromId(git, commitId))
+        getWebHookURLs(repository.owner, repository.name) match {
+          case webHookURLs if(webHookURLs.nonEmpty) =>
+            for(ownerAccount <- getAccountByUserName(repository.owner)){
+              callWebHook(repository.owner, repository.name, webHookURLs,
+                WebHookPayload(git, loginAccount, headName, repository, List(commit), ownerAccount))
+            }
+          case _ =>
+        }
+      }
+    }
+  }
+
+  private def getPathObjectId(git: Git, path: String, revCommit: RevCommit): Option[ObjectId] = {
+    @scala.annotation.tailrec
+    def _getPathObjectId(path: String, walk: TreeWalk): Option[ObjectId] = walk.next match {
+      case true if(walk.getPathString == path) => Some(walk.getObjectId(0))
+      case true  => _getPathObjectId(path, walk)
+      case false => None
+    }
+
+    using(new TreeWalk(git.getRepository)){ treeWalk =>
+      treeWalk.addTree(revCommit.getTree)
+      treeWalk.setRecursive(true)
+      _getPathObjectId(path, treeWalk)
+    }
+  }
+
+  private def archiveRepository(name: String, suffix: String, repository: RepositoryService.RepositoryInfo): File = {
+    val revision = name.stripSuffix(suffix)
+    val workDir = getDownloadWorkDir(repository.owner, repository.name, session.getId)
+    if(workDir.exists) {
+      FileUtils.deleteDirectory(workDir)
+    }
+    workDir.mkdirs
+
+    val file = new File(workDir, repository.name + "-" +
+      (if(revision.length == 40) revision.substring(0, 10) else revision).replace('/', '_') + suffix)
+
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+      val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(revision))
+      using(new java.io.FileOutputStream(file))  { out =>
+        git.archive
+           .setFormat(suffix.tail)
+           .setTree(revCommit.getTree)
+           .setOutputStream(out)
+           .call()
+      }
+      contentType = "application/octet-stream"
+      response.setHeader("Content-Disposition", s"attachment; filename=${file.getName}")
+      file
+    }
+  }
+
+  private def isEditable(owner: String, repository: String, author: String)(implicit context: app.Context): Boolean =
+    hasWritePermission(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
 }

src/main/scala/app/SearchController.scala

@@ -2,6 +2,7 @@ package app
 
 import util._
 import ControlUtil._
+import Implicits._
 import service._
 import jp.sf.amateras.scalatra.forms._
 

src/main/scala/app/SystemSettingsController.scala

@@ -3,19 +3,30 @@ package app
 import service.{AccountService, SystemSettingsService}
 import SystemSettingsService._
 import util.AdminAuthenticator
+import util.Directory._
+import util.ControlUtil._
 import jp.sf.amateras.scalatra.forms._
+import ssh.SshServer
+import org.apache.commons.io.FileUtils
+import java.io.FileInputStream
+import plugin.{Plugin, PluginSystem}
+import org.scalatra.Ok
+import util.Implicits._
 
 class SystemSettingsController extends SystemSettingsControllerBase
-  with SystemSettingsService with AccountService with AdminAuthenticator
+  with AccountService with AdminAuthenticator
 
 trait SystemSettingsControllerBase extends ControllerBase {
-  self: SystemSettingsService with AccountService with AdminAuthenticator =>
+  self: AccountService with AdminAuthenticator =>
 
   private val form = mapping(
     "baseUrl"                  -> trim(label("Base URL", optional(text()))),
+    "information"              -> trim(label("Information", optional(text()))),
     "allowAccountRegistration" -> trim(label("Account registration", boolean())),
     "gravatar"                 -> trim(label("Gravatar", boolean())),
     "notification"             -> trim(label("Notification", boolean())),
+    "ssh"                      -> trim(label("SSH access", boolean())),
+    "sshPort"                  -> trim(label("SSH port", optional(number()))),
     "smtp"                     -> optionalIfNotChecked("notification", mapping(
         "host"                     -> trim(label("SMTP Host", text(required))),
         "port"                     -> trim(label("SMTP Port", optional(number()))),
@@ -33,22 +44,159 @@ trait SystemSettingsControllerBase extends ControllerBase {
         "bindPassword"             -> trim(label("Bind Password", optional(text()))),
         "baseDN"                   -> trim(label("Base DN", text(required))),
         "userNameAttribute"        -> trim(label("User name attribute", text(required))),
+        "additionalFilterCondition"-> trim(label("Additional filter condition", optional(text()))),
         "fullNameAttribute"        -> trim(label("Full name attribute", optional(text()))),
-        "mailAttribute"            -> trim(label("Mail address attribute", text(required))),
+        "mailAttribute"            -> trim(label("Mail address attribute", optional(text()))),
         "tls"                      -> trim(label("Enable TLS", optional(boolean()))),
         "keystore"                 -> trim(label("Keystore", optional(text())))
     )(Ldap.apply))
-  )(SystemSettings.apply)
+  )(SystemSettings.apply).verifying { settings =>
+    if(settings.ssh && settings.baseUrl.isEmpty){
+      Seq("baseUrl" -> "Base URL is required if SSH access is enabled.")
+    } else Nil
+  }
 
+  private val pluginForm = mapping(
+    "pluginId" -> list(trim(label("", text())))
+  )(PluginForm.apply)
+
+  case class PluginForm(pluginIds: List[String])
 
   get("/admin/system")(adminOnly {
-    admin.html.system(loadSystemSettings(), flash.get("info"))
+    admin.html.system(flash.get("info"))
   })
 
   post("/admin/system", form)(adminOnly { form =>
     saveSystemSettings(form)
+
+    if(form.ssh && SshServer.isActive && context.settings.sshPort != form.sshPort){
+      SshServer.stop()
+    }
+
+    if(form.ssh && !SshServer.isActive && form.baseUrl.isDefined){
+      SshServer.start(request.getServletContext,
+        form.sshPort.getOrElse(SystemSettingsService.DefaultSshPort),
+        form.baseUrl.get)
+    } else if(!form.ssh && SshServer.isActive){
+      SshServer.stop()
+    }
+
     flash += "info" -> "System settings has been updated."
     redirect("/admin/system")
   })
 
+  get("/admin/plugins")(adminOnly {
+    if(enablePluginSystem){
+      val installedPlugins = plugin.PluginSystem.plugins
+      val updatablePlugins = getAvailablePlugins(installedPlugins).filter(_.status == "updatable")
+      admin.plugins.html.installed(installedPlugins, updatablePlugins)
+    } else NotFound
+  })
+
+  post("/admin/plugins/_update", pluginForm)(adminOnly { form =>
+    if(enablePluginSystem){
+      deletePlugins(form.pluginIds)
+      installPlugins(form.pluginIds)
+      redirect("/admin/plugins")
+    } else NotFound
+  })
+
+  post("/admin/plugins/_delete", pluginForm)(adminOnly { form =>
+    if(enablePluginSystem){
+      deletePlugins(form.pluginIds)
+      redirect("/admin/plugins")
+    } else NotFound
+  })
+
+  get("/admin/plugins/available")(adminOnly {
+    if(enablePluginSystem){
+      val installedPlugins = plugin.PluginSystem.plugins
+      val availablePlugins = getAvailablePlugins(installedPlugins).filter(_.status == "available")
+      admin.plugins.html.available(availablePlugins)
+    } else NotFound
+  })
+
+  post("/admin/plugins/_install", pluginForm)(adminOnly { form =>
+    if(enablePluginSystem){
+      installPlugins(form.pluginIds)
+      redirect("/admin/plugins")
+    } else NotFound
+  })
+
+  get("/admin/plugins/console")(adminOnly {
+    if(enablePluginSystem){
+      admin.plugins.html.console()
+    } else NotFound
+  })
+
+  post("/admin/plugins/console")(adminOnly {
+    if(enablePluginSystem){
+      val script = request.getParameter("script")
+      val result = plugin.ScalaPlugin.eval(script)
+      Ok()
+    } else NotFound
+  })
+
+  // TODO Move these methods to PluginSystem or Service?
+  private def deletePlugins(pluginIds: List[String]): Unit = {
+    pluginIds.foreach { pluginId =>
+      plugin.PluginSystem.uninstall(pluginId)
+      val dir = new java.io.File(PluginHome, pluginId)
+      if(dir.exists && dir.isDirectory){
+        FileUtils.deleteQuietly(dir)
+        PluginSystem.uninstall(pluginId)
+      }
+    }
+  }
+
+  private def installPlugins(pluginIds: List[String]): Unit = {
+    val dir = getPluginCacheDir()
+    val installedPlugins = plugin.PluginSystem.plugins
+    getAvailablePlugins(installedPlugins).filter(x => pluginIds.contains(x.id)).foreach { plugin =>
+      val pluginDir = new java.io.File(PluginHome, plugin.id)
+      if(pluginDir.exists){
+        FileUtils.deleteDirectory(pluginDir)
+      }
+      FileUtils.copyDirectory(new java.io.File(dir, plugin.repository + "/" + plugin.id), pluginDir)
+      PluginSystem.installPlugin(plugin.id)
+    }
+  }
+
+  private def getAvailablePlugins(installedPlugins: List[Plugin]): List[SystemSettingsControllerBase.AvailablePlugin] = {
+    val repositoryRoot = getPluginCacheDir()
+
+    if(repositoryRoot.exists && repositoryRoot.isDirectory){
+      PluginSystem.repositories.flatMap { repo =>
+        val repoDir = new java.io.File(repositoryRoot, repo.id)
+        if(repoDir.exists && repoDir.isDirectory){
+          repoDir.listFiles.filter(d => d.isDirectory && !d.getName.startsWith(".")).map { plugin =>
+            val propertyFile = new java.io.File(plugin, "plugin.properties")
+            val properties = new java.util.Properties()
+            if(propertyFile.exists && propertyFile.isFile){
+              using(new FileInputStream(propertyFile)){ in =>
+                properties.load(in)
+              }
+            }
+            SystemSettingsControllerBase.AvailablePlugin(
+              repository  = repo.id,
+              id          = properties.getProperty("id"),
+              version     = properties.getProperty("version"),
+              author      = properties.getProperty("author"),
+              url         = properties.getProperty("url"),
+              description = properties.getProperty("description"),
+              status      = installedPlugins.find(_.id == properties.getProperty("id")) match {
+                case Some(x) if(PluginSystem.isUpdatable(x.version, properties.getProperty("version")))=> "updatable"
+                case Some(x) => "installed"
+                case None    => "available"
+              })
+          }
+        } else Nil
+      }
+    } else Nil
+  }
+}
+
+object SystemSettingsControllerBase {
+  case class AvailablePlugin(repository: String, id: String, version: String,
+                             author: String, url: String, description: String, status: String)
 }

src/main/scala/app/UserManagementController.scala

@@ -4,9 +4,11 @@ import service._
 import util.AdminAuthenticator
 import util.StringUtil._
 import util.ControlUtil._
-import jp.sf.amateras.scalatra.forms._
-import org.apache.commons.io.FileUtils
 import util.Directory._
+import util.Implicits._
+import jp.sf.amateras.scalatra.forms._
+import org.scalatra.i18n.Messages
+import org.apache.commons.io.FileUtils
 
 class UserManagementController extends UserManagementControllerBase
   with AccountService with RepositoryService with AdminAuthenticator
@@ -23,10 +25,10 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
                           fileId: Option[String], clearImage: Boolean, isRemoved: Boolean)
 
   case class NewGroupForm(groupName: String, url: Option[String], fileId: Option[String],
-                          memberNames: Option[String])
+                          members: String)
 
   case class EditGroupForm(groupName: String, url: Option[String], fileId: Option[String],
-                           memberNames: Option[String], clearImage: Boolean, isRemoved: Boolean)
+                           members: String, clearImage: Boolean, isRemoved: Boolean)
 
   val newUserForm = mapping(
     "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier, uniqueUserName))),
@@ -47,21 +49,21 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
     "url"         -> trim(label("URL"          ,optional(text(maxlength(200))))),
     "fileId"      -> trim(label("File ID"      ,optional(text()))),
     "clearImage"  -> trim(label("Clear image"  ,boolean())),
-    "removed"     -> trim(label("Disable"      ,boolean()))
+    "removed"     -> trim(label("Disable"      ,boolean(disableByNotYourself("userName"))))
   )(EditUserForm.apply)
 
   val newGroupForm = mapping(
     "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName))),
     "url"       -> trim(label("URL"        ,optional(text(maxlength(200))))),
     "fileId"    -> trim(label("File ID"    ,optional(text()))),
-    "memberNames" -> trim(label("Member Names" ,optional(text())))
+    "members"   -> trim(label("Members"    ,text(required, members)))
   )(NewGroupForm.apply)
 
   val editGroupForm = mapping(
     "groupName"  -> trim(label("Group name"  ,text(required, maxlength(100), identifier))),
     "url"        -> trim(label("URL"         ,optional(text(maxlength(200))))),
     "fileId"     -> trim(label("File ID"     ,optional(text()))),
-    "memberNames" -> trim(label("Member Names" ,optional(text()))),
+    "members"    -> trim(label("Members"     ,text(required, members))),
     "clearImage" -> trim(label("Clear image" ,boolean())),
     "removed"    -> trim(label("Disable"     ,boolean()))
   )(EditGroupForm.apply)
@@ -69,10 +71,10 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
   get("/admin/users")(adminOnly {
     val includeRemoved = params.get("includeRemoved").map(_.toBoolean).getOrElse(false)
     val users          = getAllUsers(includeRemoved)
-
     val members        = users.collect { case account if(account.isGroupAccount) =>
-      account.userName -> getGroupMembers(account.userName)
+      account.userName -> getGroupMembers(account.userName).map(_.userName)
     }.toMap
+
     admin.users.html.list(users, members, includeRemoved)
   })
   
@@ -127,7 +129,11 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
 
   post("/admin/users/_newgroup", newGroupForm)(adminOnly { form =>
     createGroup(form.groupName, form.url)
-    updateGroupMembers(form.groupName, form.memberNames.map(_.split(",").toList).getOrElse(Nil))
+    updateGroupMembers(form.groupName, form.members.split(",").map {
+      _.split(":") match {
+        case Array(userName, isManager) => (userName, isManager.toBoolean)
+      }
+    }.toList)
     updateImage(form.groupName, form.fileId, false)
     redirect("/admin/users")
   })
@@ -139,7 +145,11 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
   })
 
   post("/admin/users/:groupName/_editgroup", editGroupForm)(adminOnly { form =>
-    defining(params("groupName"), form.memberNames.map(_.split(",").toList).getOrElse(Nil)){ case (groupName, memberNames) =>
+    defining(params("groupName"), form.members.split(",").map {
+      _.split(":") match {
+        case Array(userName, isManager) => (userName, isManager.toBoolean)
+      }
+    }.toList){ case (groupName, members) =>
       getAccountByUserName(groupName, true).map { account =>
         updateGroup(groupName, form.url, form.isRemoved)
 
@@ -155,11 +165,11 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
           }
         } else {
           // Update GROUP_MEMBER
-          updateGroupMembers(form.groupName, memberNames)
+          updateGroupMembers(form.groupName, members)
           // Update COLLABORATOR for group repositories
           getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
             removeCollaborators(form.groupName, repositoryName)
-            memberNames.foreach { userName =>
+            members.foreach { case (userName, isManager) =>
               addCollaborator(form.groupName, repositoryName, userName)
             }
           }
@@ -172,8 +182,22 @@ trait UserManagementControllerBase extends AccountManagementControllerBase {
     }
   })
 
-  post("/admin/users/_usercheck")(adminOnly {
+  private def members: Constraint = new Constraint(){
-    getAccountByUserName(params("userName")).isDefined
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
-  })
+      if(value.split(",").exists {
+        _.split(":") match { case Array(userName, isManager) => isManager.toBoolean }
+      }) None else Some("Must select one manager at least.")
+    }
+  }
 
+  protected def disableByNotYourself(paramName: String): Constraint = new Constraint() {
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
+      params.get(paramName).flatMap { userName =>
+        if(userName == context.loginAccount.get.userName)
+          Some("You can't disable your account yourself")
+        else
+          None
+      }
+    }
+  }
 }

src/main/scala/app/WikiController.scala

@@ -4,10 +4,10 @@ import service._
 import util._
 import util.Directory._
 import util.ControlUtil._
+import util.Implicits._
 import jp.sf.amateras.scalatra.forms._
 import org.eclipse.jgit.api.Git
 import org.scalatra.i18n.Messages
-import scala.Some
 import java.util.ResourceBundle
 
 class WikiController extends WikiControllerBase 
@@ -36,7 +36,8 @@ trait WikiControllerBase extends ControllerBase {
   
   get("/:owner/:repository/wiki")(referrersOnly { repository =>
     getWikiPage(repository.owner, repository.name, "Home").map { page =>
-      wiki.html.page("Home", page, repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
+      wiki.html.page("Home", page, getWikiPageList(repository.owner, repository.name),
+        repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
     } getOrElse redirect(s"/${repository.owner}/${repository.name}/wiki/Home/_edit")
   })
   
@@ -44,7 +45,8 @@ trait WikiControllerBase extends ControllerBase {
     val pageName = StringUtil.urlDecode(params("page"))
 
     getWikiPage(repository.owner, repository.name, pageName).map { page =>
-      wiki.html.page(pageName, page, repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
+      wiki.html.page(pageName, page, getWikiPageList(repository.owner, repository.name),
+        repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
     } getOrElse redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(pageName)}/_edit")
   })
   

src/main/scala/model/Account.scala

@@ -1,21 +1,26 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait AccountComponent { self: Profile =>
+  import profile.simple._
+  import self._
 
-object Accounts extends Table[Account]("ACCOUNT") {
+  lazy val Accounts = TableQuery[Accounts]
-  def userName = column[String]("USER_NAME", O PrimaryKey)
+
-  def fullName = column[String]("FULL_NAME")
+  class Accounts(tag: Tag) extends Table[Account](tag, "ACCOUNT") {
-  def mailAddress = column[String]("MAIL_ADDRESS")
+    val userName = column[String]("USER_NAME", O PrimaryKey)
-  def password = column[String]("PASSWORD")
+    val fullName = column[String]("FULL_NAME")
-  def isAdmin = column[Boolean]("ADMINISTRATOR")
+    val mailAddress = column[String]("MAIL_ADDRESS")
-  def url = column[String]("URL")
+    val password = column[String]("PASSWORD")
-  def registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val isAdmin = column[Boolean]("ADMINISTRATOR")
-  def updatedDate = column[java.util.Date]("UPDATED_DATE")
+    val url = column[String]("URL")
-  def lastLoginDate = column[java.util.Date]("LAST_LOGIN_DATE")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
-  def image = column[String]("IMAGE")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
-  def groupAccount = column[Boolean]("GROUP_ACCOUNT")
+    val lastLoginDate = column[java.util.Date]("LAST_LOGIN_DATE")
-  def removed = column[Boolean]("REMOVED")
+    val image = column[String]("IMAGE")
-  def * = userName ~ fullName ~ mailAddress ~ password ~ isAdmin ~ url.? ~ registeredDate ~ updatedDate ~ lastLoginDate.? ~ image.? ~ groupAccount ~ removed <> (Account, Account.unapply _)
+    val groupAccount = column[Boolean]("GROUP_ACCOUNT")
+    val removed = column[Boolean]("REMOVED")
+    def * = (userName, fullName, mailAddress, password, isAdmin, url.?, registeredDate, updatedDate, lastLoginDate.?, image.?, groupAccount, removed) <> (Account.tupled, Account.unapply)
+  }
 }
 
 case class Account(

src/main/scala/model/Activity.scala

@@ -1,31 +1,29 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait ActivityComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
 
-object Activities extends Table[Activity]("ACTIVITY") with BasicTemplate {
+  lazy val Activities = TableQuery[Activities]
-  def activityId = column[Int]("ACTIVITY_ID", O AutoInc)
-  def activityUserName = column[String]("ACTIVITY_USER_NAME")
-  def activityType = column[String]("ACTIVITY_TYPE")
-  def message = column[String]("MESSAGE")
-  def additionalInfo = column[String]("ADDITIONAL_INFO")
-  def activityDate = column[java.util.Date]("ACTIVITY_DATE")
-  def * = activityId ~ userName ~ repositoryName ~ activityUserName ~ activityType ~ message ~ additionalInfo.? ~ activityDate <> (Activity, Activity.unapply _)
-  def autoInc = userName ~ repositoryName ~ activityUserName ~ activityType ~ message ~ additionalInfo.? ~ activityDate returning activityId
-}
 
-object CommitLog extends Table[(String, String, String)]("COMMIT_LOG") with BasicTemplate {
+  class Activities(tag: Tag) extends Table[Activity](tag, "ACTIVITY") with BasicTemplate {
-  def commitId = column[String]("COMMIT_ID")
+    val activityId = column[Int]("ACTIVITY_ID", O AutoInc)
-  def * = userName ~ repositoryName ~ commitId
+    val activityUserName = column[String]("ACTIVITY_USER_NAME")
-  def byPrimaryKey(userName: String, repositoryName: String, commitId: String) = byRepository(userName, repositoryName) && (this.commitId is commitId.bind)
+    val activityType = column[String]("ACTIVITY_TYPE")
+    val message = column[String]("MESSAGE")
+    val additionalInfo = column[String]("ADDITIONAL_INFO")
+    val activityDate = column[java.util.Date]("ACTIVITY_DATE")
+    def * = (userName, repositoryName, activityUserName, activityType, message, additionalInfo.?, activityDate, activityId) <> (Activity.tupled, Activity.unapply)
+  }
 }
 
 case class Activity(
-  activityId: Int,
   userName: String,
   repositoryName: String,
   activityUserName: String,
   activityType: String,
   message: String,
   additionalInfo: Option[String],
-  activityDate: java.util.Date
+  activityDate: java.util.Date,
+  activityId: Int = 0
 )

src/main/scala/model/BasicTemplate.scala

@@ -1,44 +1,54 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+protected[model] trait TemplateComponent { self: Profile =>
+  import profile.simple._
 
-protected[model] trait BasicTemplate { self: Table[_] =>
+  trait BasicTemplate { self: Table[_] =>
-  def userName = column[String]("USER_NAME")
+    val userName = column[String]("USER_NAME")
-  def repositoryName = column[String]("REPOSITORY_NAME")
+    val repositoryName = column[String]("REPOSITORY_NAME")
 
     def byRepository(owner: String, repository: String) =
-    (userName is owner.bind) && (repositoryName is repository.bind)
+      (userName === owner.bind) && (repositoryName === repository.bind)
 
     def byRepository(userName: Column[String], repositoryName: Column[String]) =
-    (this.userName is userName) && (this.repositoryName is repositoryName)
+      (this.userName === userName) && (this.repositoryName === repositoryName)
-}
+  }
 
-protected[model] trait IssueTemplate extends BasicTemplate { self: Table[_] =>
+  trait IssueTemplate extends BasicTemplate { self: Table[_] =>
-  def issueId = column[Int]("ISSUE_ID")
+    val issueId = column[Int]("ISSUE_ID")
 
     def byIssue(owner: String, repository: String, issueId: Int) =
-    byRepository(owner, repository) && (this.issueId is issueId.bind)
+      byRepository(owner, repository) && (this.issueId === issueId.bind)
 
     def byIssue(userName: Column[String], repositoryName: Column[String], issueId: Column[Int]) =
-    byRepository(userName, repositoryName) && (this.issueId is issueId)
+      byRepository(userName, repositoryName) && (this.issueId === issueId)
-}
+  }
 
-protected[model] trait LabelTemplate extends BasicTemplate { self: Table[_] =>
+  trait LabelTemplate extends BasicTemplate { self: Table[_] =>
-  def labelId = column[Int]("LABEL_ID")
+    val labelId = column[Int]("LABEL_ID")
 
     def byLabel(owner: String, repository: String, labelId: Int) =
-    byRepository(owner, repository) && (this.labelId is labelId.bind)
+      byRepository(owner, repository) && (this.labelId === labelId.bind)
 
     def byLabel(userName: Column[String], repositoryName: Column[String], labelId: Column[Int]) =
-    byRepository(userName, repositoryName) && (this.labelId is labelId)
+      byRepository(userName, repositoryName) && (this.labelId === labelId)
-}
+  }
 
-protected[model] trait MilestoneTemplate extends BasicTemplate { self: Table[_] =>
+  trait MilestoneTemplate extends BasicTemplate { self: Table[_] =>
-  def milestoneId = column[Int]("MILESTONE_ID")
+    val milestoneId = column[Int]("MILESTONE_ID")
 
     def byMilestone(owner: String, repository: String, milestoneId: Int) =
-    byRepository(owner, repository) && (this.milestoneId is milestoneId.bind)
+      byRepository(owner, repository) && (this.milestoneId === milestoneId.bind)
 
     def byMilestone(userName: Column[String], repositoryName: Column[String], milestoneId: Column[Int]) =
-    byRepository(userName, repositoryName) && (this.milestoneId is milestoneId)
+      byRepository(userName, repositoryName) && (this.milestoneId === milestoneId)
+  }
+
+  trait CommitTemplate extends BasicTemplate { self: Table[_] =>
+    val commitId = column[String]("COMMIT_ID")
+
+    def byCommit(owner: String, repository: String, commitId: String) =
+      byRepository(owner, repository) && (this.commitId === commitId)
+  }
+
 }

src/main/scala/model/Collaborator.scala

@@ -1,13 +1,17 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait CollaboratorComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
 
-object Collaborators extends Table[Collaborator]("COLLABORATOR") with BasicTemplate {
+  lazy val Collaborators = TableQuery[Collaborators]
-  def collaboratorName = column[String]("COLLABORATOR_NAME")
+
-  def * = userName ~ repositoryName ~ collaboratorName <> (Collaborator, Collaborator.unapply _)
+  class Collaborators(tag: Tag) extends Table[Collaborator](tag, "COLLABORATOR") with BasicTemplate {
+    val collaboratorName = column[String]("COLLABORATOR_NAME")
+    def * = (userName, repositoryName, collaboratorName) <> (Collaborator.tupled, Collaborator.unapply)
 
     def byPrimaryKey(owner: String, repository: String, collaborator: String) =
-    byRepository(owner, repository) && (collaboratorName is collaborator.bind)
+      byRepository(owner, repository) && (collaboratorName === collaborator.bind)
+  }
 }
 
 case class Collaborator(

src/main/scala/model/Comment.scala

@@ -0,0 +1,78 @@
+package model
+
+trait Comment {
+  val commentedUserName: String
+  val registeredDate: java.util.Date
+}
+
+trait IssueCommentComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
+
+  lazy val IssueComments = new TableQuery(tag => new IssueComments(tag)){
+    def autoInc = this returning this.map(_.commentId)
+  }
+
+  class IssueComments(tag: Tag) extends Table[IssueComment](tag, "ISSUE_COMMENT") with IssueTemplate {
+    val commentId = column[Int]("COMMENT_ID", O AutoInc)
+    val action = column[String]("ACTION")
+    val commentedUserName = column[String]("COMMENTED_USER_NAME")
+    val content = column[String]("CONTENT")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
+    def * = (userName, repositoryName, issueId, commentId, action, commentedUserName, content, registeredDate, updatedDate) <> (IssueComment.tupled, IssueComment.unapply)
+
+    def byPrimaryKey(commentId: Int) = this.commentId === commentId.bind
+  }
+}
+
+case class IssueComment (
+  userName: String,
+  repositoryName: String,
+  issueId: Int,
+  commentId: Int = 0,
+  action: String,
+  commentedUserName: String,
+  content: String,
+  registeredDate: java.util.Date,
+  updatedDate: java.util.Date
+) extends Comment
+
+trait CommitCommentComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
+
+  lazy val CommitComments = new TableQuery(tag => new CommitComments(tag)){
+    def autoInc = this returning this.map(_.commentId)
+  }
+
+  class CommitComments(tag: Tag) extends Table[CommitComment](tag, "COMMIT_COMMENT") with CommitTemplate {
+    val commentId = column[Int]("COMMENT_ID", O AutoInc)
+    val commentedUserName = column[String]("COMMENTED_USER_NAME")
+    val content = column[String]("CONTENT")
+    val fileName = column[Option[String]]("FILE_NAME")
+    val oldLine = column[Option[Int]]("OLD_LINE_NUMBER")
+    val newLine = column[Option[Int]]("NEW_LINE_NUMBER")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
+    val pullRequest = column[Boolean]("PULL_REQUEST")
+    def * = (userName, repositoryName, commitId, commentId, commentedUserName, content, fileName, oldLine, newLine, registeredDate, updatedDate, pullRequest) <> (CommitComment.tupled, CommitComment.unapply)
+
+    def byPrimaryKey(commentId: Int) = this.commentId === commentId.bind
+  }
+}
+
+case class CommitComment(
+  userName: String,
+  repositoryName: String,
+  commitId: String,
+  commentId: Int = 0,
+  commentedUserName: String,
+  content: String,
+  fileName: Option[String],
+  oldLine: Option[Int],
+  newLine: Option[Int],
+  registeredDate: java.util.Date,
+  updatedDate: java.util.Date,
+  pullRequest: Boolean
+ ) extends Comment

src/main/scala/model/GroupMembers.scala

@@ -1,14 +1,20 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait GroupMemberComponent { self: Profile =>
+  import profile.simple._
 
-object GroupMembers extends Table[GroupMember]("GROUP_MEMBER") {
+  lazy val GroupMembers = TableQuery[GroupMembers]
-  def groupName = column[String]("GROUP_NAME", O PrimaryKey)
+
-  def userName = column[String]("USER_NAME", O PrimaryKey)
+  class GroupMembers(tag: Tag) extends Table[GroupMember](tag, "GROUP_MEMBER") {
-  def * = groupName ~ userName <> (GroupMember, GroupMember.unapply _)
+    val groupName = column[String]("GROUP_NAME", O PrimaryKey)
+    val userName = column[String]("USER_NAME", O PrimaryKey)
+    val isManager = column[Boolean]("MANAGER")
+    def * = (groupName, userName, isManager) <> (GroupMember.tupled, GroupMember.unapply)
+  }
 }
 
 case class GroupMember(
   groupName: String,
-  userName: String
+  userName: String,
+  isManager: Boolean
 )

src/main/scala/model/Issue.scala

@@ -1,29 +1,36 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait IssueComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
 
-object IssueId extends Table[(String, String, Int)]("ISSUE_ID") with IssueTemplate {
+  lazy val IssueId = TableQuery[IssueId]
-  def * = userName ~ repositoryName ~ issueId
+  lazy val IssueOutline = TableQuery[IssueOutline]
+  lazy val Issues = TableQuery[Issues]
+
+  class IssueId(tag: Tag) extends Table[(String, String, Int)](tag, "ISSUE_ID") with IssueTemplate {
+    def * = (userName, repositoryName, issueId)
     def byPrimaryKey(owner: String, repository: String) = byRepository(owner, repository)
-}
+  }
 
-object IssueOutline extends Table[(String, String, Int, Int)]("ISSUE_OUTLINE_VIEW") with IssueTemplate {
+  class IssueOutline(tag: Tag) extends Table[(String, String, Int, Int)](tag, "ISSUE_OUTLINE_VIEW") with IssueTemplate {
-  def commentCount = column[Int]("COMMENT_COUNT")
+    val commentCount = column[Int]("COMMENT_COUNT")
-  def * = userName ~ repositoryName ~ issueId ~ commentCount
+    def * = (userName, repositoryName, issueId, commentCount)
-}
+  }
 
-object Issues extends Table[Issue]("ISSUE") with IssueTemplate with MilestoneTemplate {
+  class Issues(tag: Tag) extends Table[Issue](tag, "ISSUE") with IssueTemplate with MilestoneTemplate {
-  def openedUserName = column[String]("OPENED_USER_NAME")
+    val openedUserName = column[String]("OPENED_USER_NAME")
-  def assignedUserName = column[String]("ASSIGNED_USER_NAME")
+    val assignedUserName = column[String]("ASSIGNED_USER_NAME")
-  def title = column[String]("TITLE")
+    val title = column[String]("TITLE")
-  def content = column[String]("CONTENT")
+    val content = column[String]("CONTENT")
-  def closed = column[Boolean]("CLOSED")
+    val closed = column[Boolean]("CLOSED")
-  def registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
-  def updatedDate = column[java.util.Date]("UPDATED_DATE")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
-  def pullRequest = column[Boolean]("PULL_REQUEST")
+    val pullRequest = column[Boolean]("PULL_REQUEST")
-  def * = userName ~ repositoryName ~ issueId ~ openedUserName ~ milestoneId.? ~ assignedUserName.? ~ title ~ content.? ~ closed ~ registeredDate ~ updatedDate ~ pullRequest <> (Issue, Issue.unapply _)
+    def * = (userName, repositoryName, issueId, openedUserName, milestoneId.?, assignedUserName.?, title, content.?, closed, registeredDate, updatedDate, pullRequest) <> (Issue.tupled, Issue.unapply)
 
     def byPrimaryKey(owner: String, repository: String, issueId: Int) = byIssue(owner, repository, issueId)
+  }
 }
 
 case class Issue(
@@ -38,4 +45,5 @@ case class Issue(
   closed: Boolean,
   registeredDate: java.util.Date,
   updatedDate: java.util.Date,
-    isPullRequest: Boolean)
+  isPullRequest: Boolean
+)

src/main/scala/model/IssueComment.scala

@@ -1,28 +0,0 @@
-package model
-
-import scala.slick.driver.H2Driver.simple._
-
-object IssueComments extends Table[IssueComment]("ISSUE_COMMENT") with IssueTemplate {
-  def commentId = column[Int]("COMMENT_ID", O AutoInc)
-  def action = column[String]("ACTION")
-  def commentedUserName = column[String]("COMMENTED_USER_NAME")
-  def content = column[String]("CONTENT")
-  def registeredDate = column[java.util.Date]("REGISTERED_DATE")
-  def updatedDate = column[java.util.Date]("UPDATED_DATE")
-  def * = userName ~ repositoryName ~ issueId ~ commentId ~ action ~ commentedUserName ~ content ~ registeredDate ~ updatedDate <> (IssueComment, IssueComment.unapply _)
-
-  def autoInc = userName ~ repositoryName ~ issueId ~ action ~ commentedUserName ~ content ~ registeredDate ~ updatedDate returning commentId
-  def byPrimaryKey(commentId: Int) = this.commentId is commentId.bind
-}
-
-case class IssueComment(
-    userName: String,
-    repositoryName: String,
-    issueId: Int,
-    commentId: Int,
-    action: String,
-    commentedUserName: String,
-    content: String,
-    registeredDate: java.util.Date,
-    updatedDate: java.util.Date
-)

src/main/scala/model/IssueLabels.scala

@@ -1,15 +1,20 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait IssueLabelComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
 
-object IssueLabels extends Table[IssueLabel]("ISSUE_LABEL") with IssueTemplate with LabelTemplate {
+  lazy val IssueLabels = TableQuery[IssueLabels]
-  def * = userName ~ repositoryName ~ issueId ~ labelId <> (IssueLabel, IssueLabel.unapply _)
+
+  class IssueLabels(tag: Tag) extends Table[IssueLabel](tag, "ISSUE_LABEL") with IssueTemplate with LabelTemplate {
+    def * = (userName, repositoryName, issueId, labelId) <> (IssueLabel.tupled, IssueLabel.unapply)
     def byPrimaryKey(owner: String, repository: String, issueId: Int, labelId: Int) =
-    byIssue(owner, repository, issueId) && (this.labelId is labelId.bind)
+      byIssue(owner, repository, issueId) && (this.labelId === labelId.bind)
+  }
 }
 
 case class IssueLabel(
   userName: String,
   repositoryName: String,
   issueId: Int,
-  labelId: Int)
+  labelId: Int
+)

src/main/scala/model/Labels.scala

@@ -1,21 +1,25 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait LabelComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
 
-object Labels extends Table[Label]("LABEL") with LabelTemplate {
+  lazy val Labels = TableQuery[Labels]
-  def labelName = column[String]("LABEL_NAME")
+
-  def color = column[String]("COLOR")
+  class Labels(tag: Tag) extends Table[Label](tag, "LABEL") with LabelTemplate {
-  def * = userName ~ repositoryName ~ labelId ~ labelName ~ color <> (Label, Label.unapply _)
+    override val labelId = column[Int]("LABEL_ID", O AutoInc)
+    val labelName = column[String]("LABEL_NAME")
+    val color = column[String]("COLOR")
+    def * = (userName, repositoryName, labelId, labelName, color) <> (Label.tupled, Label.unapply)
 
-  def ins = userName ~ repositoryName ~ labelName ~ color
     def byPrimaryKey(owner: String, repository: String, labelId: Int) = byLabel(owner, repository, labelId)
     def byPrimaryKey(userName: Column[String], repositoryName: Column[String], labelId: Column[Int]) = byLabel(userName, repositoryName, labelId)
+  }
 }
 
 case class Label(
   userName: String,
   repositoryName: String,
-  labelId: Int,
+  labelId: Int = 0,
   labelName: String,
   color: String){
 
@@ -27,8 +31,7 @@ case class Label(
     if(Integer.parseInt(r, 16) + Integer.parseInt(g, 16) + Integer.parseInt(b, 16) > 408){
       "000000"
     } else {
-      "FFFFFF"
+      "ffffff"
     }
   }
-
 }

src/main/scala/model/Milestone.scala

@@ -1,24 +1,30 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait MilestoneComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
 
-object Milestones extends Table[Milestone]("MILESTONE") with MilestoneTemplate {
+  lazy val Milestones = TableQuery[Milestones]
-  def title = column[String]("TITLE")
+
-  def description = column[String]("DESCRIPTION")
+  class Milestones(tag: Tag) extends Table[Milestone](tag, "MILESTONE") with MilestoneTemplate {
-  def dueDate = column[java.util.Date]("DUE_DATE")
+    override val milestoneId = column[Int]("MILESTONE_ID", O AutoInc)
-  def closedDate = column[java.util.Date]("CLOSED_DATE")
+    val title = column[String]("TITLE")
-  def * = userName ~ repositoryName ~ milestoneId ~ title ~ description.? ~ dueDate.? ~ closedDate.? <> (Milestone, Milestone.unapply _)
+    val description = column[String]("DESCRIPTION")
+    val dueDate = column[java.util.Date]("DUE_DATE")
+    val closedDate = column[java.util.Date]("CLOSED_DATE")
+    def * = (userName, repositoryName, milestoneId, title, description.?, dueDate.?, closedDate.?) <> (Milestone.tupled, Milestone.unapply)
 
-  def ins = userName ~ repositoryName ~ title ~ description.? ~ dueDate.? ~ closedDate.?
     def byPrimaryKey(owner: String, repository: String, milestoneId: Int) = byMilestone(owner, repository, milestoneId)
     def byPrimaryKey(userName: Column[String], repositoryName: Column[String], milestoneId: Column[Int]) = byMilestone(userName, repositoryName, milestoneId)
+  }
 }
 
 case class Milestone(
   userName: String,
   repositoryName: String,
-  milestoneId: Int,
+  milestoneId: Int = 0,
   title: String,
   description: Option[String],
   dueDate: Option[java.util.Date],
-  closedDate: Option[java.util.Date])
+  closedDate: Option[java.util.Date]
+)

src/main/scala/model/Plugin.scala

@@ -0,0 +1,19 @@
+package model
+
+trait PluginComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
+
+  lazy val Plugins = TableQuery[Plugins]
+
+  class Plugins(tag: Tag) extends Table[Plugin](tag, "PLUGIN"){
+    val pluginId = column[String]("PLUGIN_ID", O PrimaryKey)
+    val version = column[String]("VERSION")
+    def * = (pluginId, version) <> (Plugin.tupled, Plugin.unapply)
+  }
+}
+
+case class Plugin(
+  pluginId: String,
+  version: String
+)

src/main/scala/model/Profile.scala

@@ -0,0 +1,43 @@
+package model
+
+trait Profile {
+  val profile: slick.driver.JdbcProfile
+  import profile.simple._
+
+  // java.util.Date Mapped Column Types
+  implicit val dateColumnType = MappedColumnType.base[java.util.Date, java.sql.Timestamp](
+      d => new java.sql.Timestamp(d.getTime),
+      t => new java.util.Date(t.getTime)
+  )
+
+  implicit class RichColumn(c1: Column[Boolean]){
+    def &&(c2: => Column[Boolean], guard: => Boolean): Column[Boolean] = if(guard) c1 && c2 else c1
+  }
+
+}
+
+object Profile extends {
+  val profile = slick.driver.H2Driver
+
+} with AccountComponent
+  with ActivityComponent
+  with CollaboratorComponent
+  with CommitCommentComponent
+  with GroupMemberComponent
+  with IssueComponent
+  with IssueCommentComponent
+  with IssueLabelComponent
+  with LabelComponent
+  with MilestoneComponent
+  with PullRequestComponent
+  with RepositoryComponent
+  with SshKeyComponent
+  with WebHookComponent
+  with PluginComponent with Profile {
+
+  /**
+   * Returns system date.
+   */
+  def currentDate = new java.util.Date()
+
+}

src/main/scala/model/PullRequest.scala

@@ -1,18 +1,22 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait PullRequestComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
 
-object PullRequests extends Table[PullRequest]("PULL_REQUEST") with IssueTemplate {
+  lazy val PullRequests = TableQuery[PullRequests]
-  def branch = column[String]("BRANCH")
+
-  def requestUserName = column[String]("REQUEST_USER_NAME")
+  class PullRequests(tag: Tag) extends Table[PullRequest](tag, "PULL_REQUEST") with IssueTemplate {
-  def requestRepositoryName = column[String]("REQUEST_REPOSITORY_NAME")
+    val branch = column[String]("BRANCH")
-  def requestBranch = column[String]("REQUEST_BRANCH")
+    val requestUserName = column[String]("REQUEST_USER_NAME")
-  def commitIdFrom = column[String]("COMMIT_ID_FROM")
+    val requestRepositoryName = column[String]("REQUEST_REPOSITORY_NAME")
-  def commitIdTo = column[String]("COMMIT_ID_TO")
+    val requestBranch = column[String]("REQUEST_BRANCH")
-  def * = userName ~ repositoryName ~ issueId ~ branch ~ requestUserName ~ requestRepositoryName ~ requestBranch ~ commitIdFrom ~ commitIdTo <> (PullRequest, PullRequest.unapply _)
+    val commitIdFrom = column[String]("COMMIT_ID_FROM")
+    val commitIdTo = column[String]("COMMIT_ID_TO")
+    def * = (userName, repositoryName, issueId, branch, requestUserName, requestRepositoryName, requestBranch, commitIdFrom, commitIdTo) <> (PullRequest.tupled, PullRequest.unapply)
 
     def byPrimaryKey(userName: String, repositoryName: String, issueId: Int) = byIssue(userName, repositoryName, issueId)
     def byPrimaryKey(userName: Column[String], repositoryName: Column[String], issueId: Column[Int]) = byIssue(userName, repositoryName, issueId)
+  }
 }
 
 case class PullRequest(

src/main/scala/model/Repository.scala

@@ -1,21 +1,26 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait RepositoryComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
+  import self._
 
-object Repositories extends Table[Repository]("REPOSITORY") with BasicTemplate {
+  lazy val Repositories = TableQuery[Repositories]
-  def isPrivate = column[Boolean]("PRIVATE")
+
-  def description = column[String]("DESCRIPTION")
+  class Repositories(tag: Tag) extends Table[Repository](tag, "REPOSITORY") with BasicTemplate {
-  def defaultBranch = column[String]("DEFAULT_BRANCH")
+    val isPrivate = column[Boolean]("PRIVATE")
-  def registeredDate = column[java.util.Date]("REGISTERED_DATE")
+    val description = column[String]("DESCRIPTION")
-  def updatedDate = column[java.util.Date]("UPDATED_DATE")
+    val defaultBranch = column[String]("DEFAULT_BRANCH")
-  def lastActivityDate = column[java.util.Date]("LAST_ACTIVITY_DATE")
+    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
-  def originUserName = column[String]("ORIGIN_USER_NAME")
+    val updatedDate = column[java.util.Date]("UPDATED_DATE")
-  def originRepositoryName = column[String]("ORIGIN_REPOSITORY_NAME")
+    val lastActivityDate = column[java.util.Date]("LAST_ACTIVITY_DATE")
-  def parentUserName = column[String]("PARENT_USER_NAME")
+    val originUserName = column[String]("ORIGIN_USER_NAME")
-  def parentRepositoryName = column[String]("PARENT_REPOSITORY_NAME")
+    val originRepositoryName = column[String]("ORIGIN_REPOSITORY_NAME")
-  def * = userName ~ repositoryName ~ isPrivate ~ description.? ~ defaultBranch ~ registeredDate ~ updatedDate ~ lastActivityDate ~ originUserName.? ~ originRepositoryName.? ~ parentUserName.? ~ parentRepositoryName.? <> (Repository, Repository.unapply _)
+    val parentUserName = column[String]("PARENT_USER_NAME")
+    val parentRepositoryName = column[String]("PARENT_REPOSITORY_NAME")
+    def * = (userName, repositoryName, isPrivate, description.?, defaultBranch, registeredDate, updatedDate, lastActivityDate, originUserName.?, originRepositoryName.?, parentUserName.?, parentRepositoryName.?) <> (Repository.tupled, Repository.unapply)
 
     def byPrimaryKey(owner: String, repository: String) = byRepository(owner, repository)
+  }
 }
 
 case class Repository(

src/main/scala/model/SshKey.scala

@@ -0,0 +1,24 @@
+package model
+
+trait SshKeyComponent { self: Profile =>
+  import profile.simple._
+
+  lazy val SshKeys = TableQuery[SshKeys]
+
+  class SshKeys(tag: Tag) extends Table[SshKey](tag, "SSH_KEY") {
+    val userName = column[String]("USER_NAME")
+    val sshKeyId = column[Int]("SSH_KEY_ID", O AutoInc)
+    val title = column[String]("TITLE")
+    val publicKey = column[String]("PUBLIC_KEY")
+    def * = (userName, sshKeyId, title, publicKey) <> (SshKey.tupled, SshKey.unapply)
+
+    def byPrimaryKey(userName: String, sshKeyId: Int) = (this.userName === userName.bind) && (this.sshKeyId === sshKeyId.bind)
+  }
+}
+
+case class SshKey(
+  userName: String,
+  sshKeyId: Int = 0,
+  title: String,
+  publicKey: String
+)

src/main/scala/model/WebHook.scala

@@ -1,12 +1,16 @@
 package model
 
-import scala.slick.driver.H2Driver.simple._
+trait WebHookComponent extends TemplateComponent { self: Profile =>
+  import profile.simple._
 
-object WebHooks extends Table[WebHook]("WEB_HOOK") with BasicTemplate {
+  lazy val WebHooks = TableQuery[WebHooks]
-  def url = column[String]("URL")
-  def * = userName ~ repositoryName ~ url <> (WebHook, WebHook.unapply _)
 
-  def byPrimaryKey(owner: String, repository: String, url: String) = byRepository(owner, repository) && (this.url is url.bind)
+  class WebHooks(tag: Tag) extends Table[WebHook](tag, "WEB_HOOK") with BasicTemplate {
+    val url = column[String]("URL")
+    def * = (userName, repositoryName, url) <> (WebHook.tupled, WebHook.unapply)
+
+    def byPrimaryKey(owner: String, repository: String, url: String) = byRepository(owner, repository) && (this.url === url.bind)
+  }
 }
 
 case class WebHook(

src/main/scala/model/package.scala

@@ -1,20 +1,3 @@
 package object model {
-  import scala.slick.driver.BasicDriver.Implicit._
+  type Session = slick.jdbc.JdbcBackend#Session
-  import scala.slick.lifted.{Column, MappedTypeMapper}
-
-  // java.util.Date TypeMapper
-  implicit val dateTypeMapper = MappedTypeMapper.base[java.util.Date, java.sql.Timestamp](
-      d => new java.sql.Timestamp(d.getTime),
-      t => new java.util.Date(t.getTime)
-  )
-
-  implicit class RichColumn(c1: Column[Boolean]){
-    def &&(c2: => Column[Boolean], guard: => Boolean): Column[Boolean] = if(guard) c1 && c2 else c1
-  }
-
-  /**
-   * Returns system date.
-   */
-  def currentDate = new java.util.Date()
-
 }

src/main/scala/plugin/Plugin.scala

@@ -0,0 +1,22 @@
+package plugin
+
+import plugin.PluginSystem._
+import java.sql.Connection
+
+trait Plugin {
+  val id: String
+  val version: String
+  val author: String
+  val url: String
+  val description: String
+
+  def repositoryMenus       : List[RepositoryMenu]
+  def globalMenus           : List[GlobalMenu]
+  def repositoryActions     : List[RepositoryAction]
+  def globalActions         : List[Action]
+  def javaScripts           : List[JavaScript]
+}
+
+object PluginConnectionHolder {
+  val threadLocal = new ThreadLocal[Connection]
+}

src/main/scala/plugin/PluginSystem.scala

@@ -0,0 +1,194 @@
+package plugin
+
+import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
+import org.slf4j.LoggerFactory
+import java.util.concurrent.atomic.AtomicBoolean
+import util.Directory._
+import util.ControlUtil._
+import org.apache.commons.io.{IOUtils, FileUtils}
+import Security._
+import service.PluginService
+import model.Profile._
+import profile.simple._
+import java.io.FileInputStream
+import java.sql.Connection
+import app.Context
+import service.RepositoryService.RepositoryInfo
+
+/**
+ * Provides extension points to plug-ins.
+ */
+object PluginSystem extends PluginService {
+
+  private val logger = LoggerFactory.getLogger(PluginSystem.getClass)
+
+  private val initialized = new AtomicBoolean(false)
+  private val pluginsMap = scala.collection.mutable.Map[String, Plugin]()
+  private val repositoriesList = scala.collection.mutable.ListBuffer[PluginRepository]()
+
+  def install(plugin: Plugin): Unit = {
+    pluginsMap.put(plugin.id, plugin)
+  }
+
+  def plugins: List[Plugin] = pluginsMap.values.toList
+
+  def uninstall(id: String)(implicit session: Session): Unit = {
+    pluginsMap.remove(id)
+
+    // Delete from PLUGIN table
+    deletePlugin(id)
+
+    // Drop tables
+    val pluginDir = new java.io.File(PluginHome)
+    val sqlFile = new java.io.File(pluginDir, s"${id}/sql/drop.sql")
+    if(sqlFile.exists){
+      val sql = IOUtils.toString(new FileInputStream(sqlFile), "UTF-8")
+      using(session.conn.createStatement()){ stmt =>
+        stmt.executeUpdate(sql)
+      }
+    }
+  }
+
+  def repositories: List[PluginRepository] = repositoriesList.toList
+
+  /**
+   * Initializes the plugin system. Load scripts from GITBUCKET_HOME/plugins.
+   */
+  def init()(implicit session: Session): Unit = {
+    if(initialized.compareAndSet(false, true)){
+      // Load installed plugins
+      val pluginDir = new java.io.File(PluginHome)
+      if(pluginDir.exists && pluginDir.isDirectory){
+        pluginDir.listFiles.filter(f => f.isDirectory && !f.getName.startsWith(".")).foreach { dir =>
+          installPlugin(dir.getName)
+        }
+      }
+      // Add default plugin repositories
+      repositoriesList += PluginRepository("central", "https://github.com/takezoe/gitbucket_plugins.git")
+    }
+  }
+
+  // TODO Method name seems to not so good.
+  def installPlugin(id: String)(implicit session: Session): Unit = {
+    val pluginHome = new java.io.File(PluginHome)
+    val pluginDir  = new java.io.File(pluginHome, id)
+
+    val scalaFile = new java.io.File(pluginDir, "plugin.scala")
+    if(scalaFile.exists && scalaFile.isFile){
+      val properties = new java.util.Properties()
+      using(new java.io.FileInputStream(new java.io.File(pluginDir, "plugin.properties"))){ in =>
+        properties.load(in)
+      }
+
+      val pluginId     = properties.getProperty("id")
+      val version      = properties.getProperty("version")
+      val author       = properties.getProperty("author")
+      val url          = properties.getProperty("url")
+      val description  = properties.getProperty("description")
+
+      val source = s"""
+        |val id          = "${pluginId}"
+        |val version     = "${version}"
+        |val author      = "${author}"
+        |val url         = "${url}"
+        |val description = "${description}"
+      """.stripMargin + FileUtils.readFileToString(scalaFile, "UTF-8")
+
+      try {
+        // Compile and eval Scala source code
+        ScalaPlugin.eval(pluginDir.listFiles.filter(_.getName.endsWith(".scala.html")).map { file =>
+          ScalaPlugin.compileTemplate(
+            id.replace("-", ""),
+            file.getName.stripSuffix(".scala.html"),
+            IOUtils.toString(new FileInputStream(file)))
+        }.mkString("\n") + source)
+
+        // Migrate database
+        val plugin = getPlugin(pluginId)
+        if(plugin.isEmpty){
+          registerPlugin(model.Plugin(pluginId, version))
+          migrate(session.conn, pluginId, "0.0")
+        } else {
+          updatePlugin(model.Plugin(pluginId, version))
+          migrate(session.conn, pluginId, plugin.get.version)
+        }
+      } catch {
+        case e: Throwable => logger.warn(s"Error in plugin loading for ${scalaFile.getAbsolutePath}", e)
+      }
+    }
+  }
+
+  // TODO Should PluginSystem provide a way to migrate resources other than H2?
+  private def migrate(conn: Connection, pluginId: String, current: String): Unit = {
+    val pluginDir = new java.io.File(PluginHome)
+
+    // TODO Is ot possible to use this migration system in GitBucket migration?
+    val dim = current.split("\\.")
+    val currentVersion = Version(dim(0).toInt, dim(1).toInt)
+
+    val sqlDir = new java.io.File(pluginDir, s"${pluginId}/sql")
+    if(sqlDir.exists && sqlDir.isDirectory){
+      sqlDir.listFiles.filter(_.getName.endsWith(".sql")).map { file =>
+        val array = file.getName.replaceFirst("\\.sql", "").split("_")
+        Version(array(0).toInt, array(1).toInt)
+      }
+      .sorted.reverse.takeWhile(_ > currentVersion)
+      .reverse.foreach { version =>
+        val sqlFile = new java.io.File(pluginDir, s"${pluginId}/sql/${version.major}_${version.minor}.sql")
+        val sql = IOUtils.toString(new FileInputStream(sqlFile), "UTF-8")
+        using(conn.createStatement()){ stmt =>
+          stmt.executeUpdate(sql)
+        }
+      }
+    }
+  }
+
+  case class Version(major: Int, minor: Int) extends Ordered[Version] {
+
+    override def compare(that: Version): Int = {
+      if(major != that.major){
+        major.compare(that.major)
+      } else{
+        minor.compare(that.minor)
+      }
+    }
+
+    def displayString: String = major + "." + minor
+  }
+
+  def repositoryMenus       : List[RepositoryMenu]   = pluginsMap.values.flatMap(_.repositoryMenus).toList
+  def globalMenus           : List[GlobalMenu]       = pluginsMap.values.flatMap(_.globalMenus).toList
+  def repositoryActions     : List[RepositoryAction] = pluginsMap.values.flatMap(_.repositoryActions).toList
+  def globalActions         : List[Action]           = pluginsMap.values.flatMap(_.globalActions).toList
+  def javaScripts           : List[JavaScript]       = pluginsMap.values.flatMap(_.javaScripts).toList
+
+  // Case classes to hold plug-ins information internally in GitBucket
+  case class PluginRepository(id: String, url: String)
+  case class GlobalMenu(label: String, url: String, icon: String, condition: Context => Boolean)
+  case class RepositoryMenu(label: String, name: String, url: String, icon: String, condition: Context => Boolean)
+  case class Action(method: String, path: String, security: Security, function: (HttpServletRequest, HttpServletResponse, Context) => Any)
+  case class RepositoryAction(method: String, path: String, security: Security, function: (HttpServletRequest, HttpServletResponse, Context, RepositoryInfo) => Any)
+  case class Button(label: String, href: String)
+  case class JavaScript(filter: String => Boolean, script: String)
+
+  /**
+   * Checks whether the plugin is updatable.
+   */
+  def isUpdatable(oldVersion: String, newVersion: String): Boolean = {
+    if(oldVersion == newVersion){
+      false
+    } else {
+      val dim1 = oldVersion.split("\\.").map(_.toInt)
+      val dim2 = newVersion.split("\\.").map(_.toInt)
+      dim1.zip(dim2).foreach { case (a, b) =>
+        if(a < b){
+          return true
+        } else if(a > b){
+          return false
+        }
+      }
+      return false
+    }
+  }
+
+}

src/main/scala/plugin/PluginUpdateJob.scala

@@ -0,0 +1,66 @@
+package plugin
+
+import util.Directory._
+import org.eclipse.jgit.api.Git
+import org.slf4j.LoggerFactory
+import org.quartz.{Scheduler, JobExecutionContext, Job}
+import org.quartz.JobBuilder._
+import org.quartz.TriggerBuilder._
+import org.quartz.SimpleScheduleBuilder._
+
+class PluginUpdateJob extends Job {
+
+  private val logger = LoggerFactory.getLogger(classOf[PluginUpdateJob])
+  private var failedCount = 0
+
+  /**
+   * Clone or pull all plugin repositories
+   *
+   * TODO Support plugin repository access through the proxy server
+   */
+  override def execute(context: JobExecutionContext): Unit = {
+    try {
+      if(failedCount > 3){
+        logger.error("Skip plugin information updating because failed count is over limit")
+      } else {
+        logger.info("Start plugin information updating")
+        PluginSystem.repositories.foreach { repository =>
+          logger.info(s"Updating ${repository.id}: ${repository.url}...")
+          val dir = getPluginCacheDir()
+          val repo = new java.io.File(dir, repository.id)
+          if(repo.exists){
+            // pull if the repository is already cloned
+            Git.open(repo).pull().call()
+          } else {
+            // clone if the repository is not exist
+            Git.cloneRepository().setURI(repository.url).setDirectory(repo).call()
+          }
+        }
+        logger.info("End plugin information updating")
+      }
+    } catch {
+      case e: Exception => {
+        failedCount = failedCount + 1
+        logger.error("Failed to update plugin information", e)
+      }
+    }
+  }
+}
+
+object PluginUpdateJob {
+
+  def schedule(scheduler: Scheduler): Unit = {
+    val job = newJob(classOf[PluginUpdateJob])
+      .withIdentity("pluginUpdateJob")
+      .build()
+
+    val trigger = newTrigger()
+      .withIdentity("pluginUpdateTrigger")
+      .startNow()
+      .withSchedule(simpleSchedule().withIntervalInHours(24).repeatForever())
+      .build()
+
+    scheduler.scheduleJob(job, trigger)
+  }
+
+}

src/main/scala/plugin/ScalaPlugin.scala

@@ -0,0 +1,77 @@
+package plugin
+
+import scala.collection.mutable.ListBuffer
+import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
+import app.Context
+import plugin.PluginSystem._
+import plugin.PluginSystem.RepositoryMenu
+import plugin.Security._
+import service.RepositoryService.RepositoryInfo
+import scala.reflect.runtime.currentMirror
+import scala.tools.reflect.ToolBox
+import play.twirl.compiler.TwirlCompiler
+import scala.io.Codec
+
+// TODO This is a sample implementation for Scala based plug-ins.
+class ScalaPlugin(val id: String, val version: String,
+                  val author: String, val url: String, val description: String) extends Plugin {
+
+  private val repositoryMenuList   = ListBuffer[RepositoryMenu]()
+  private val globalMenuList       = ListBuffer[GlobalMenu]()
+  private val repositoryActionList = ListBuffer[RepositoryAction]()
+  private val globalActionList     = ListBuffer[Action]()
+  private val javaScriptList       = ListBuffer[JavaScript]()
+
+  def repositoryMenus       : List[RepositoryMenu]   = repositoryMenuList.toList
+  def globalMenus           : List[GlobalMenu]       = globalMenuList.toList
+  def repositoryActions     : List[RepositoryAction] = repositoryActionList.toList
+  def globalActions         : List[Action]           = globalActionList.toList
+  def javaScripts           : List[JavaScript]       = javaScriptList.toList
+
+  def addRepositoryMenu(label: String, name: String, url: String, icon: String)(condition: (Context) => Boolean): Unit = {
+    repositoryMenuList += RepositoryMenu(label, name, url, icon, condition)
+  }
+
+  def addGlobalMenu(label: String, url: String, icon: String)(condition: (Context) => Boolean): Unit = {
+    globalMenuList += GlobalMenu(label, url, icon, condition)
+  }
+
+  def addGlobalAction(method: String, path: String, security: Security = All())(function: (HttpServletRequest, HttpServletResponse, Context) => Any): Unit = {
+    globalActionList += Action(method, path, security, function)
+  }
+
+  def addRepositoryAction(method: String, path: String, security: Security = All())(function: (HttpServletRequest, HttpServletResponse, Context, RepositoryInfo) => Any): Unit = {
+    repositoryActionList += RepositoryAction(method, path, security, function)
+  }
+
+  def addJavaScript(filter: String => Boolean, script: String): Unit = {
+    javaScriptList += JavaScript(filter, script)
+  }
+
+}
+
+object ScalaPlugin {
+
+  def define(id: String, version: String, author: String, url: String, description: String)
+    = new ScalaPlugin(id, version, author, url, description)
+
+  def eval(source: String): Any = {
+    val toolbox = currentMirror.mkToolBox()
+    val tree = toolbox.parse(source)
+    toolbox.eval(tree)
+  }
+
+  def compileTemplate(packageName: String, name: String, source: String): String = {
+    val result = TwirlCompiler.parseAndGenerateCodeNewParser(
+      Array(packageName, name),
+      source.getBytes("UTF-8"),
+      Codec(scala.util.Properties.sourceEncoding),
+      "",
+      "play.twirl.api.HtmlFormat.Appendable",
+      "play.twirl.api.HtmlFormat",
+      "",
+      false)
+
+    result.replaceFirst("package .*", "")
+  }
+}

src/main/scala/plugin/Security.scala

@@ -0,0 +1,36 @@
+package plugin
+
+/**
+ * Defines enum case classes to specify permission for actions which is provided by plugin.
+ */
+object Security {
+
+  sealed trait Security
+
+  /**
+   * All users and guests
+   */
+  case class All() extends Security
+
+  /**
+   * Only signed-in users
+   */
+  case class Login() extends Security
+
+  /**
+   * Only repository owner and collaborators
+   */
+  case class Member() extends Security
+
+  /**
+   * Only repository owner and managers of group repository
+   */
+  case class Owner() extends Security
+
+  /**
+   * Only administrators
+   */
+  case class Admin() extends Security
+
+}
+

src/main/scala/plugin/package.scala

@@ -0,0 +1,56 @@
+import java.sql.PreparedStatement
+import play.twirl.api.Html
+import util.ControlUtil._
+import scala.collection.mutable.ListBuffer
+
+package object plugin {
+
+  case class Redirect(path: String)
+  case class Fragment(html: Html)
+  case class RawData(contentType: String, content: Array[Byte])
+
+  object db {
+    // TODO labelled place holder support
+    def select(sql: String, params: Any*): Seq[Map[String, String]] = {
+      defining(PluginConnectionHolder.threadLocal.get){ conn =>
+        using(conn.prepareStatement(sql)){ stmt =>
+          setParams(stmt, params: _*)
+          using(stmt.executeQuery()){ rs =>
+            val list = new ListBuffer[Map[String, String]]()
+            while(rs.next){
+              defining(rs.getMetaData){ meta =>
+                val map = Range(1, meta.getColumnCount + 1).map { i =>
+                  val name = meta.getColumnName(i)
+                  (name, rs.getString(name))
+                }.toMap
+                list += map
+              }
+            }
+            list
+          }
+        }
+      }
+    }
+
+    // TODO labelled place holder support
+    def update(sql: String, params: Any*): Int = {
+      defining(PluginConnectionHolder.threadLocal.get){ conn =>
+        using(conn.prepareStatement(sql)){ stmt =>
+          setParams(stmt, params: _*)
+          stmt.executeUpdate()
+        }
+      }
+    }
+
+    private def setParams(stmt: PreparedStatement, params: Any*): Unit = {
+      params.zipWithIndex.foreach { case (p, i) =>
+        p match {
+          case x: String  => stmt.setString(i + 1, x)
+          case x: Int     => stmt.setInt(i + 1, x)
+          case x: Boolean => stmt.setBoolean(i + 1, x)
+        }
+      }
+    }
+  }
+
+}

src/main/scala/service/AccountService.scala

@@ -1,13 +1,12 @@
 package service
 
-import model._
+import model.Profile._
-import scala.slick.driver.H2Driver.simple._
+import profile.simple._
-import Database.threadLocalSession
+import model.{Account, GroupMember}
+// TODO [Slick 2.0]NOT import directly?
+import model.Profile.dateColumnType
 import service.SystemSettingsService.SystemSettings
 import util.StringUtil._
-import model.GroupMember
-import scala.Some
-import model.Account
 import util.LDAPUtil
 import org.slf4j.LoggerFactory
 
@@ -15,7 +14,7 @@ trait AccountService {
 
   private val logger = LoggerFactory.getLogger(classOf[AccountService])
 
-  def authenticate(settings: SystemSettings, userName: String, password: String): Option[Account] =
+  def authenticate(settings: SystemSettings, userName: String, password: String)(implicit s: Session): Option[Account] =
     if(settings.ldapAuthentication){
       ldapAuthentication(settings, userName, password)
     } else {
@@ -25,7 +24,7 @@ trait AccountService {
   /**
    * Authenticate by internal database.
    */
-  private def defaultAuthentication(userName: String, password: String) = {
+  private def defaultAuthentication(userName: String, password: String)(implicit s: Session) = {
     getAccountByUserName(userName).collect {
       case account if(!account.isGroupAccount && account.password == sha1(password)) => Some(account)
     } getOrElse None
@@ -34,19 +33,39 @@ trait AccountService {
   /**
    * Authenticate by LDAP.
    */
-  private def ldapAuthentication(settings: SystemSettings, userName: String, password: String) = {
+  private def ldapAuthentication(settings: SystemSettings, userName: String, password: String)
+                                (implicit s: Session): Option[Account] = {
     LDAPUtil.authenticate(settings.ldap.get, userName, password) match {
       case Right(ldapUserInfo) => {
         // Create or update account by LDAP information
-        getAccountByUserName(userName, true) match {
+        getAccountByUserName(ldapUserInfo.userName, true) match {
-          case Some(x) if(!x.isRemoved) => updateAccount(x.copy(mailAddress = ldapUserInfo.mailAddress, fullName = ldapUserInfo.fullName))
+          case Some(x) if(!x.isRemoved) => {
+            if(settings.ldap.get.mailAttribute.getOrElse("").isEmpty) {
+              updateAccount(x.copy(fullName = ldapUserInfo.fullName))
+            } else {
+              updateAccount(x.copy(mailAddress = ldapUserInfo.mailAddress, fullName = ldapUserInfo.fullName))
+            }
+            getAccountByUserName(ldapUserInfo.userName)
+          }
           case Some(x) if(x.isRemoved)  => {
-            logger.info(s"LDAP Authentication Failed: Account is already registered but disabled..")
+            logger.info("LDAP Authentication Failed: Account is already registered but disabled.")
             defaultAuthentication(userName, password)
           }
-          case None => createAccount(userName, "", ldapUserInfo.fullName, ldapUserInfo.mailAddress, false, None)
+          case None => getAccountByMailAddress(ldapUserInfo.mailAddress, true) match {
+            case Some(x) if(!x.isRemoved) => {
+              updateAccount(x.copy(fullName = ldapUserInfo.fullName))
+              getAccountByUserName(ldapUserInfo.userName)
+            }
+            case Some(x) if(x.isRemoved)  => {
+              logger.info("LDAP Authentication Failed: Account is already registered but disabled.")
+              defaultAuthentication(userName, password)
+            }
+            case None => {
+              createAccount(ldapUserInfo.userName, "", ldapUserInfo.fullName, ldapUserInfo.mailAddress, false, None)
+              getAccountByUserName(ldapUserInfo.userName)
+            }
+          }
         }
-        getAccountByUserName(userName)
       }
       case Left(errorMessage) => {
         logger.info(s"LDAP Authentication Failed: ${errorMessage}")
@@ -55,20 +74,21 @@ trait AccountService {
     }
   }
 
-  def getAccountByUserName(userName: String, includeRemoved: Boolean = false): Option[Account] =
+  def getAccountByUserName(userName: String, includeRemoved: Boolean = false)(implicit s: Session): Option[Account] =
-    Query(Accounts) filter(t => (t.userName is userName.bind) && (t.removed is false.bind, !includeRemoved)) firstOption
+    Accounts filter(t => (t.userName === userName.bind) && (t.removed === false.bind, !includeRemoved)) firstOption
 
-  def getAccountByMailAddress(mailAddress: String, includeRemoved: Boolean = false): Option[Account] =
+  def getAccountByMailAddress(mailAddress: String, includeRemoved: Boolean = false)(implicit s: Session): Option[Account] =
-    Query(Accounts) filter(t => (t.mailAddress is mailAddress.bind) && (t.removed is false.bind, !includeRemoved)) firstOption
+    Accounts filter(t => (t.mailAddress.toLowerCase === mailAddress.toLowerCase.bind) && (t.removed === false.bind, !includeRemoved)) firstOption
 
-  def getAllUsers(includeRemoved: Boolean = true): List[Account] =
+  def getAllUsers(includeRemoved: Boolean = true)(implicit s: Session): List[Account] =
     if(includeRemoved){
-      Query(Accounts) sortBy(_.userName) list
+      Accounts sortBy(_.userName) list
     } else {
-      Query(Accounts) filter (_.removed is false.bind) sortBy(_.userName) list
+      Accounts filter (_.removed === false.bind) sortBy(_.userName) list
     }
 
-  def createAccount(userName: String, password: String, fullName: String, mailAddress: String, isAdmin: Boolean, url: Option[String]): Unit =
+  def createAccount(userName: String, password: String, fullName: String, mailAddress: String, isAdmin: Boolean, url: Option[String])
+                   (implicit s: Session): Unit =
     Accounts insert Account(
       userName       = userName,
       password       = password,
@@ -83,10 +103,10 @@ trait AccountService {
       isGroupAccount = false,
       isRemoved      = false)
 
-  def updateAccount(account: Account): Unit = 
+  def updateAccount(account: Account)(implicit s: Session): Unit =
     Accounts
-      .filter { a => a.userName is account.userName.bind }
+      .filter { a =>  a.userName === account.userName.bind }
-      .map    { a => a.password ~ a.fullName ~ a.mailAddress ~ a.isAdmin ~ a.url.? ~ a.registeredDate ~ a.updatedDate ~ a.lastLoginDate.? ~ a.removed }
+      .map    { a => (a.password, a.fullName, a.mailAddress, a.isAdmin, a.url.?, a.registeredDate, a.updatedDate, a.lastLoginDate.?, a.removed) }
       .update (
         account.password,
         account.fullName,
@@ -98,13 +118,13 @@ trait AccountService {
         account.lastLoginDate,
         account.isRemoved)
 
-  def updateAvatarImage(userName: String, image: Option[String]): Unit =
+  def updateAvatarImage(userName: String, image: Option[String])(implicit s: Session): Unit =
-    Accounts.filter(_.userName is userName.bind).map(_.image.?).update(image)
+    Accounts.filter(_.userName === userName.bind).map(_.image.?).update(image)
 
-  def updateLastLoginDate(userName: String): Unit =
+  def updateLastLoginDate(userName: String)(implicit s: Session): Unit =
-    Accounts.filter(_.userName is userName.bind).map(_.lastLoginDate).update(currentDate)
+    Accounts.filter(_.userName === userName.bind).map(_.lastLoginDate).update(currentDate)
 
-  def createGroup(groupName: String, url: Option[String]): Unit =
+  def createGroup(groupName: String, url: Option[String])(implicit s: Session): Unit =
     Accounts insert Account(
       userName       = groupName,
       password       = "",
@@ -119,34 +139,38 @@ trait AccountService {
       isGroupAccount = true,
       isRemoved      = false)
 
-  def updateGroup(groupName: String, url: Option[String], removed: Boolean): Unit =
+  def updateGroup(groupName: String, url: Option[String], removed: Boolean)(implicit s: Session): Unit =
-    Accounts.filter(_.userName is groupName.bind).map(t => t.url.? ~ t.removed).update(url, removed)
+    Accounts.filter(_.userName === groupName.bind).map(t => t.url.? -> t.removed).update(url, removed)
 
-  def updateGroupMembers(groupName: String, members: List[String]): Unit = {
+  def updateGroupMembers(groupName: String, members: List[(String, Boolean)])(implicit s: Session): Unit = {
-    Query(GroupMembers).filter(_.groupName is groupName.bind).delete
+    GroupMembers.filter(_.groupName === groupName.bind).delete
-    members.foreach { userName =>
+    members.foreach { case (userName, isManager) =>
-      GroupMembers insert GroupMember (groupName, userName)
+      GroupMembers insert GroupMember (groupName, userName, isManager)
     }
   }
 
-  def getGroupMembers(groupName: String): List[String] =
+  def getGroupMembers(groupName: String)(implicit s: Session): List[GroupMember] =
-    Query(GroupMembers)
+    GroupMembers
-      .filter(_.groupName is groupName.bind)
+      .filter(_.groupName === groupName.bind)
       .sortBy(_.userName)
-      .map(_.userName)
       .list
 
-  def getGroupsByUserName(userName: String): List[String] =
+  def getGroupsByUserName(userName: String)(implicit s: Session): List[String] =
-    Query(GroupMembers)
+    GroupMembers
-      .filter(_.userName is userName.bind)
+      .filter(_.userName === userName.bind)
       .sortBy(_.groupName)
       .map(_.groupName)
       .list
 
-  def removeUserRelatedData(userName: String): Unit = {
+  def removeUserRelatedData(userName: String)(implicit s: Session): Unit = {
-    Query(GroupMembers).filter(_.userName is userName.bind).delete
+    GroupMembers.filter(_.userName === userName.bind).delete
-    Query(Collaborators).filter(_.collaboratorName is userName.bind).delete
+    Collaborators.filter(_.collaboratorName === userName.bind).delete
-    Query(Repositories).filter(_.userName is userName.bind).delete
+    Repositories.filter(_.userName === userName.bind).delete
+  }
+
+  def getGroupNames(userName: String)(implicit s: Session): List[String] = {
+    List(userName) ++
+      Collaborators.filter(_.collaboratorName === userName.bind).sortBy(_.userName).map(_.userName).list
   }
 
 }

src/main/scala/service/ActivityService.scala

@@ -1,19 +1,19 @@
 package service
 
-import model._
+import model.Profile._
-import scala.slick.driver.H2Driver.simple._
+import profile.simple._
-import Database.threadLocalSession
+import model.Activity
 
 trait ActivityService {
 
-  def getActivitiesByUser(activityUserName: String, isPublic: Boolean): List[Activity] =
+  def getActivitiesByUser(activityUserName: String, isPublic: Boolean)(implicit s: Session): List[Activity] =
     Activities
       .innerJoin(Repositories).on((t1, t2) => t1.byRepository(t2.userName, t2.repositoryName))
       .filter { case (t1, t2) =>
         if(isPublic){
-          (t1.activityUserName is activityUserName.bind) && (t2.isPrivate is false.bind)
+          (t1.activityUserName === activityUserName.bind) && (t2.isPrivate === false.bind)
         } else {
-          (t1.activityUserName is activityUserName.bind)
+          (t1.activityUserName === activityUserName.bind)
         }
       }
       .sortBy { case (t1, t2) => t1.activityId desc }
@@ -21,151 +21,168 @@ trait ActivityService {
       .take(30)
       .list
 
-  def getRecentActivities(): List[Activity] =
+  def getRecentActivities()(implicit s: Session): List[Activity] =
     Activities
       .innerJoin(Repositories).on((t1, t2) => t1.byRepository(t2.userName, t2.repositoryName))
-      .filter { case (t1, t2) => t2.isPrivate is false.bind }
+      .filter { case (t1, t2) =>  t2.isPrivate === false.bind }
       .sortBy { case (t1, t2) => t1.activityId desc }
       .map    { case (t1, t2) => t1 }
       .take(30)
       .list
 
+  def getRecentActivitiesByOwners(owners : Set[String])(implicit s: Session): List[Activity] =
+    Activities
+      .innerJoin(Repositories).on((t1, t2) => t1.byRepository(t2.userName, t2.repositoryName))
+      .filter { case (t1, t2) => (t2.isPrivate === false.bind) || (t2.userName inSetBind owners) }
+      .sortBy { case (t1, t2) => t1.activityId desc }
+      .map    { case (t1, t2) => t1 }
+      .take(30)
+      .list
 
-  def recordCreateRepositoryActivity(userName: String, repositoryName: String, activityUserName: String): Unit =
+  def recordCreateRepositoryActivity(userName: String, repositoryName: String, activityUserName: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                    (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "create_repository",
       s"[user:${activityUserName}] created [repo:${userName}/${repositoryName}]",
       None,
       currentDate)
 
-  def recordCreateIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+  def recordCreateIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                               (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "open_issue",
       s"[user:${activityUserName}] opened issue [issue:${userName}/${repositoryName}#${issueId}]",
       Some(title), 
       currentDate)
 
-  def recordCloseIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+  def recordCloseIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                              (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "close_issue",
       s"[user:${activityUserName}] closed issue [issue:${userName}/${repositoryName}#${issueId}]",
       Some(title),
       currentDate)
 
-  def recordClosePullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+  def recordClosePullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                    (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "close_issue",
       s"[user:${activityUserName}] closed pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
       Some(title),
       currentDate)
 
-  def recordReopenIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+  def recordReopenIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                               (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "reopen_issue",
       s"[user:${activityUserName}] reopened issue [issue:${userName}/${repositoryName}#${issueId}]",
       Some(title),
       currentDate)
 
-  def recordCommentIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String): Unit =
+  def recordCommentIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "comment_issue",
       s"[user:${activityUserName}] commented on issue [issue:${userName}/${repositoryName}#${issueId}]",
       Some(cut(comment, 200)),
       currentDate)
 
-  def recordCommentPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String): Unit =
+  def recordCommentPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                      (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "comment_issue",
       s"[user:${activityUserName}] commented on pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
       Some(cut(comment, 200)),
       currentDate)
 
-  def recordCreateWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String) =
+  def recordCommentCommitActivity(userName: String, repositoryName: String, activityUserName: String, commitId: String, comment: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                 (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
+      "comment_commit",
+      s"[user:${activityUserName}] commented on commit [commit:${userName}/${repositoryName}@${commitId}]",
+      Some(cut(comment, 200)),
+      currentDate
+    )
+
+  def recordCreateWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String)
+                                  (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "create_wiki",
       s"[user:${activityUserName}] created the [repo:${userName}/${repositoryName}] wiki",
       Some(pageName),
       currentDate)
 
-  def recordEditWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String, commitId: String) =
+  def recordEditWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String, commitId: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "edit_wiki",
       s"[user:${activityUserName}] edited the [repo:${userName}/${repositoryName}] wiki",
       Some(pageName + ":" + commitId),
       currentDate)
 
   def recordPushActivity(userName: String, repositoryName: String, activityUserName: String,
-      branchName: String, commits: List[util.JGitUtil.CommitInfo]) =
+      branchName: String, commits: List[util.JGitUtil.CommitInfo])(implicit s: Session): Unit =
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "push",
       s"[user:${activityUserName}] pushed to [branch:${userName}/${repositoryName}#${branchName}] at [repo:${userName}/${repositoryName}]",
       Some(commits.map { commit => commit.id + ":" + commit.shortMessage }.mkString("\n")),
       currentDate)
 
   def recordCreateTagActivity(userName: String, repositoryName: String, activityUserName: String, 
-      tagName: String, commits: List[util.JGitUtil.CommitInfo]) =
+      tagName: String, commits: List[util.JGitUtil.CommitInfo])(implicit s: Session): Unit =
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "create_tag",
       s"[user:${activityUserName}] created tag [tag:${userName}/${repositoryName}#${tagName}] at [repo:${userName}/${repositoryName}]",
       None,
       currentDate)
 
   def recordDeleteTagActivity(userName: String, repositoryName: String, activityUserName: String,
-                              tagName: String, commits: List[util.JGitUtil.CommitInfo]) =
+                              tagName: String, commits: List[util.JGitUtil.CommitInfo])(implicit s: Session): Unit =
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "delete_tag",
       s"[user:${activityUserName}] deleted tag ${tagName} at [repo:${userName}/${repositoryName}]",
       None,
       currentDate)
 
-  def recordCreateBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String) =
+  def recordCreateBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "create_branch",
       s"[user:${activityUserName}] created branch [branch:${userName}/${repositoryName}#${branchName}] at [repo:${userName}/${repositoryName}]",
       None,
       currentDate)
 
-  def recordDeleteBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String) =
+  def recordDeleteBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                                (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "delete_branch",
       s"[user:${activityUserName}] deleted branch ${branchName} at [repo:${userName}/${repositoryName}]",
       None,
       currentDate)
 
-  def recordForkActivity(userName: String, repositoryName: String, activityUserName: String) =
+  def recordForkActivity(userName: String, repositoryName: String, activityUserName: String)(implicit s: Session): Unit =
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "fork",
       s"[user:${activityUserName}] forked [repo:${userName}/${repositoryName}] to [repo:${activityUserName}/${repositoryName}]",
       None,
       currentDate)
 
-  def recordPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+  def recordPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                               (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "open_pullreq",
       s"[user:${activityUserName}] opened pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
       Some(title),
       currentDate)
 
-  def recordMergeActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, message: String): Unit =
+  def recordMergeActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, message: String)
-    Activities.autoInc insert(userName, repositoryName, activityUserName,
+                         (implicit s: Session): Unit =
+    Activities insert Activity(userName, repositoryName, activityUserName,
       "merge_pullreq",
       s"[user:${activityUserName}] merged pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
       Some(message),
       currentDate)
 
-  def insertCommitId(userName: String, repositoryName: String, commitId: String) = {
-    CommitLog insert (userName, repositoryName, commitId)
-  }
-
-  def insertAllCommitIds(userName: String, repositoryName: String, commitIds: List[String]) =
-    CommitLog insertAll (commitIds.map(commitId => (userName, repositoryName, commitId)): _*)
-
-  def getAllCommitIds(userName: String, repositoryName: String): List[String] =
-    Query(CommitLog).filter(_.byRepository(userName, repositoryName)).map(_.commitId).list
-
-  def existsCommitId(userName: String, repositoryName: String, commitId: String): Boolean =
-    Query(CommitLog).filter(_.byPrimaryKey(userName, repositoryName, commitId)).firstOption.isDefined
-  
   private def cut(value: String, length: Int): String =
     if(value.length > length) value.substring(0, length) + "..." else value
 }

src/main/scala/service/CommitsService.scala

@@ -0,0 +1,52 @@
+package service
+
+import scala.slick.jdbc.{StaticQuery => Q}
+import Q.interpolation
+
+import model.Profile._
+import profile.simple._
+import model.CommitComment
+import util.Implicits._
+import util.StringUtil._
+
+
+trait CommitsService {
+
+  def getCommitComments(owner: String, repository: String, commitId: String, pullRequest: Boolean)(implicit s: Session) =
+    CommitComments filter {
+      t => t.byCommit(owner, repository, commitId) && (t.pullRequest === pullRequest || pullRequest)
+    } list
+
+  def getCommitComment(owner: String, repository: String, commentId: String)(implicit s: Session) =
+    if (commentId forall (_.isDigit))
+      CommitComments filter { t =>
+        t.byPrimaryKey(commentId.toInt) && t.byRepository(owner, repository)
+      } firstOption
+    else
+      None
+
+  def createCommitComment(owner: String, repository: String, commitId: String, loginUser: String,
+    content: String, fileName: Option[String], oldLine: Option[Int], newLine: Option[Int], pullRequest: Boolean)(implicit s: Session): Int =
+    CommitComments.autoInc insert CommitComment(
+      userName          = owner,
+      repositoryName    = repository,
+      commitId          = commitId,
+      commentedUserName = loginUser,
+      content           = content,
+      fileName          = fileName,
+      oldLine           = oldLine,
+      newLine           = newLine,
+      registeredDate    = currentDate,
+      updatedDate       = currentDate,
+      pullRequest       = pullRequest)
+
+  def updateCommitComment(commentId: Int, content: String)(implicit s: Session) =
+    CommitComments
+      .filter (_.byPrimaryKey(commentId))
+      .map { t =>
+      t.content -> t.updatedDate
+    }.update (content, currentDate)
+
+  def deleteCommitComment(commentId: Int)(implicit s: Session) =
+    CommitComments filter (_.byPrimaryKey(commentId)) delete
+}

src/main/scala/service/IssuesService.scala

@@ -1,33 +1,33 @@
 package service
 
-import scala.slick.driver.H2Driver.simple._
-import Database.threadLocalSession
 import scala.slick.jdbc.{StaticQuery => Q}
 import Q.interpolation
 
-import model._
+import model.Profile._
+import profile.simple._
+import model.{Issue, IssueComment, IssueLabel, Label}
 import util.Implicits._
 import util.StringUtil._
 
 trait IssuesService {
   import IssuesService._
 
-  def getIssue(owner: String, repository: String, issueId: String) =
+  def getIssue(owner: String, repository: String, issueId: String)(implicit s: Session) =
     if (issueId forall (_.isDigit))
-      Query(Issues) filter (_.byPrimaryKey(owner, repository, issueId.toInt)) firstOption
+      Issues filter (_.byPrimaryKey(owner, repository, issueId.toInt)) firstOption
     else None
 
-  def getComments(owner: String, repository: String, issueId: Int) =
+  def getComments(owner: String, repository: String, issueId: Int)(implicit s: Session) =
-    Query(IssueComments) filter (_.byIssue(owner, repository, issueId)) list
+    IssueComments filter (_.byIssue(owner, repository, issueId)) list
 
-  def getComment(owner: String, repository: String, commentId: String) =
+  def getComment(owner: String, repository: String, commentId: String)(implicit s: Session) =
     if (commentId forall (_.isDigit))
-      Query(IssueComments) filter { t =>
+      IssueComments filter { t =>
         t.byPrimaryKey(commentId.toInt) && t.byRepository(owner, repository)
       } firstOption
     else None
 
-  def getIssueLabels(owner: String, repository: String, issueId: Int) =
+  def getIssueLabels(owner: String, repository: String, issueId: Int)(implicit s: Session) =
     IssueLabels
       .innerJoin(Labels).on { (t1, t2) =>
         t1.byLabel(t2.userName, t2.repositoryName, t2.labelId)
@@ -36,34 +36,33 @@ trait IssuesService {
       .map    ( _._2 )
       .list
 
-  def getIssueLabel(owner: String, repository: String, issueId: Int, labelId: Int) =
+  def getIssueLabel(owner: String, repository: String, issueId: Int, labelId: Int)(implicit s: Session) =
-    Query(IssueLabels) filter (_.byPrimaryKey(owner, repository, issueId, labelId)) firstOption
+    IssueLabels filter (_.byPrimaryKey(owner, repository, issueId, labelId)) firstOption
 
   /**
    * Returns the count of the search result against  issues.
    *
    * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned" or "created_by", value is the user name)
    * @param onlyPullRequest if true then counts only pull request, false then counts both of issue and pull request.
    * @param repos Tuple of the repository owner and the repository name
    * @return the count of the search result
    */
-  def countIssue(condition: IssueSearchCondition, filterUser: Map[String, String], onlyPullRequest: Boolean,
+  def countIssue(condition: IssueSearchCondition, onlyPullRequest: Boolean,
-                 repos: (String, String)*): Int =
+                 repos: (String, String)*)(implicit s: Session): Int =
-    Query(searchIssueQuery(repos, condition, filterUser, onlyPullRequest).length).first
+    Query(searchIssueQuery(repos, condition, onlyPullRequest).length).first
+
   /**
    * Returns the Map which contains issue count for each labels.
    *
    * @param owner the repository owner
    * @param repository the repository name
    * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned" or "created_by", value is the user name)
    * @return the Map which contains issue count for each labels (key is label name, value is issue count)
    */
   def countIssueGroupByLabels(owner: String, repository: String, condition: IssueSearchCondition,
-                              filterUser: Map[String, String]): Map[String, Int] = {
+                              filterUser: Map[String, String])(implicit s: Session): Map[String, Int] = {
 
-    searchIssueQuery(Seq(owner -> repository), condition.copy(labels = Set.empty), filterUser, false)
+    searchIssueQuery(Seq(owner -> repository), condition.copy(labels = Set.empty), false)
       .innerJoin(IssueLabels).on { (t1, t2) =>
         t1.byIssue(t2.userName, t2.repositoryName, t2.issueId)
       }
@@ -74,61 +73,31 @@ trait IssuesService {
         t3.labelName
       }
       .map { case (labelName, t) =>
-        labelName ~ t.length
+        labelName -> t.length
       }
       .toMap
   }
-  /**
-   * Returns list which contains issue count for each repository.
-   * If the issue does not exist, its repository is not included in the result.
-   *
-   * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned" or "created_by", value is the user name)
-   * @param onlyPullRequest if true then returns only pull request, false then returns both of issue and pull request.
-   * @param repos Tuple of the repository owner and the repository name
-   * @return list which contains issue count for each repository
-   */
-  def countIssueGroupByRepository(
-      condition: IssueSearchCondition, filterUser: Map[String, String], onlyPullRequest: Boolean,
-      repos: (String, String)*): List[(String, String, Int)] = {
-    searchIssueQuery(repos, condition.copy(repo = None), filterUser, onlyPullRequest)
-      .groupBy { t =>
-        t.userName ~ t.repositoryName
-      }
-      .map { case (repo, t) =>
-        repo ~ t.length
-      }
-      .sortBy(_._3 desc)
-      .list
-  }
 
   /**
    * Returns the search result against  issues.
    *
    * @param condition the search condition
-   * @param filterUser the filter user name (key is "all", "assigned", "created_by" or "not_created_by", value is the user name)
+   * @param pullRequest if true then returns only pull requests, false then returns only issues.
-   * @param onlyPullRequest if true then returns only pull request, false then returns both of issue and pull request.
    * @param offset the offset for pagination
    * @param limit the limit for pagination
    * @param repos Tuple of the repository owner and the repository name
    * @return the search result (list of tuples which contain issue, labels and comment count)
    */
-  def searchIssue(condition: IssueSearchCondition, filterUser: Map[String, String], onlyPullRequest: Boolean,
+  def searchIssue(condition: IssueSearchCondition, pullRequest: Boolean, offset: Int, limit: Int, repos: (String, String)*)
-                  offset: Int, limit: Int, repos: (String, String)*): List[(Issue, List[Label], Int)] = {
+                 (implicit s: Session): List[IssueInfo] = {
 
     // get issues and comment count and labels
-    searchIssueQuery(repos, condition, filterUser, onlyPullRequest)
+    searchIssueQuery(repos, condition, pullRequest)
         .innerJoin(IssueOutline).on { (t1, t2) => t1.byIssue(t2.userName, t2.repositoryName, t2.issueId) }
-        .leftJoin (IssueLabels) .on { case ((t1, t2), t3) => t1.byIssue(t3.userName, t3.repositoryName, t3.issueId) }
+        .sortBy { case (t1, t2) =>
-        .leftJoin (Labels)      .on { case (((t1, t2), t3), t4) => t3.byLabel(t4.userName, t4.repositoryName, t4.labelId) }
-        .map { case (((t1, t2), t3), t4) =>
-          (t1, t2.commentCount, t4.labelId.?, t4.labelName.?, t4.color.?)
-        }
-        .sortBy(_._4)	// labelName
-        .sortBy { case (t1, commentCount, _,_,_) =>
           (condition.sort match {
             case "created"  => t1.registeredDate
-            case "comments" => commentCount
+            case "comments" => t2.commentCount
             case "updated"  => t1.updatedDate
           }) match {
             case sort => condition.direction match {
@@ -138,6 +107,12 @@ trait IssuesService {
           }
         }
         .drop(offset).take(limit)
+        .leftJoin (IssueLabels) .on { case ((t1, t2), t3) => t1.byIssue(t3.userName, t3.repositoryName, t3.issueId) }
+        .leftJoin (Labels)      .on { case (((t1, t2), t3), t4) => t3.byLabel(t4.userName, t4.repositoryName, t4.labelId) }
+        .leftJoin (Milestones)  .on { case ((((t1, t2), t3), t4), t5) => t1.byMilestone(t5.userName, t5.repositoryName, t5.milestoneId) }
+        .map { case ((((t1, t2), t3), t4), t5) =>
+          (t1, t2.commentCount, t4.labelId.?, t4.labelName.?, t4.color.?, t5.title.?)
+        }
         .list
         .splitWith { (c1, c2) =>
           c1._1.userName       == c2._1.userName &&
@@ -145,11 +120,12 @@ trait IssuesService {
           c1._1.issueId        == c2._1.issueId
         }
         .map { issues => issues.head match {
-          case (issue, commentCount, _,_,_) =>
+          case (issue, commentCount, _, _, _, milestone) =>
-            (issue,
+            IssueInfo(issue,
              issues.flatMap { t => t._3.map (
                  Label(issue.userName, issue.repositoryName, _, t._4.get, t._5.get)
              )} toList,
+             milestone,
              commentCount)
         }} toList
   }
@@ -157,21 +133,18 @@ trait IssuesService {
   /**
    * Assembles query for conditional issue searching.
    */
-  private def searchIssueQuery(repos: Seq[(String, String)], condition: IssueSearchCondition,
+  private def searchIssueQuery(repos: Seq[(String, String)], condition: IssueSearchCondition, pullRequest: Boolean)(implicit s: Session) =
-                               filterUser: Map[String, String], onlyPullRequest: Boolean) =
+    Issues filter { t1 =>
-    Query(Issues) filter { t1 =>
+      repos
-      condition.repo
-          .map { _.split('/') match { case array => Seq(array(0) -> array(1)) } }
-          .getOrElse (repos)
         .map { case (owner, repository) => t1.byRepository(owner, repository) }
         .foldLeft[Column[Boolean]](false) ( _ || _ ) &&
-      (t1.closed           is (condition.state == "closed").bind) &&
+      (t1.closed           === (condition.state == "closed").bind) &&
-      (t1.milestoneId      is condition.milestoneId.get.get.bind, condition.milestoneId.flatten.isDefined) &&
+      (t1.milestoneId      === condition.milestoneId.get.get.bind, condition.milestoneId.flatten.isDefined) &&
-      (t1.milestoneId      isNull, condition.milestoneId == Some(None)) &&
+      (t1.milestoneId.?    isEmpty, condition.milestoneId == Some(None)) &&
-      (t1.assignedUserName is filterUser("assigned").bind, filterUser.get("assigned").isDefined) &&
+      (t1.assignedUserName === condition.assigned.get.bind, condition.assigned.isDefined) &&
-      (t1.openedUserName   is filterUser("created_by").bind, filterUser.get("created_by").isDefined) &&
+      (t1.openedUserName   === condition.author.get.bind, condition.author.isDefined) &&
-      (t1.openedUserName   isNot filterUser("not_created_by").bind, filterUser.get("not_created_by").isDefined) &&
+      (t1.pullRequest      === pullRequest.bind) &&
-      (t1.pullRequest      is true.bind, onlyPullRequest) &&
+      // Label filter
       (IssueLabels filter { t2 =>
         (t2.byIssue(t1.userName, t1.repositoryName, t1.issueId)) &&
         (t2.labelId in
@@ -179,11 +152,24 @@ trait IssuesService {
             (t3.byRepository(t1.userName, t1.repositoryName)) &&
             (t3.labelName inSetBind condition.labels)
           } map(_.labelId)))
-      } exists, condition.labels.nonEmpty)
+      } exists, condition.labels.nonEmpty) &&
+      // Visibility filter
+      (Repositories filter { t2 =>
+        (t2.byRepository(t1.userName, t1.repositoryName)) &&
+        (t2.isPrivate === (condition.visibility == Some("private")).bind)
+      } exists, condition.visibility.nonEmpty) &&
+      // Organization (group) filter
+      (t1.userName inSetBind condition.groups, condition.groups.nonEmpty) &&
+      // Mentioned filter
+      ((t1.openedUserName === condition.mentioned.get.bind) || t1.assignedUserName === condition.mentioned.get.bind ||
+        (IssueComments filter { t2 =>
+          (t2.byIssue(t1.userName, t1.repositoryName, t1.issueId)) && (t2.commentedUserName === condition.mentioned.get.bind)
+        } exists), condition.mentioned.isDefined)
     }
 
   def createIssue(owner: String, repository: String, loginUser: String, title: String, content: Option[String],
-                  assignedUserName: Option[String], milestoneId: Option[Int], isPullRequest: Boolean = false) =
+                  assignedUserName: Option[String], milestoneId: Option[Int],
+                  isPullRequest: Boolean = false)(implicit s: Session) =
     // next id number
     sql"SELECT ISSUE_ID + 1 FROM ISSUE_ID WHERE USER_NAME = $owner AND REPOSITORY_NAME = $repository FOR UPDATE".as[Int]
         .firstOption.filter { id =>
@@ -208,55 +194,57 @@ trait IssuesService {
         .update (id) > 0
     } get
 
-  def registerIssueLabel(owner: String, repository: String, issueId: Int, labelId: Int) =
+  def registerIssueLabel(owner: String, repository: String, issueId: Int, labelId: Int)(implicit s: Session) =
-    IssueLabels insert (IssueLabel(owner, repository, issueId, labelId))
+    IssueLabels insert IssueLabel(owner, repository, issueId, labelId)
 
-  def deleteIssueLabel(owner: String, repository: String, issueId: Int, labelId: Int) =
+  def deleteIssueLabel(owner: String, repository: String, issueId: Int, labelId: Int)(implicit s: Session) =
     IssueLabels filter(_.byPrimaryKey(owner, repository, issueId, labelId)) delete
 
   def createComment(owner: String, repository: String, loginUser: String,
-      issueId: Int, content: String, action: String) =
+      issueId: Int, content: String, action: String)(implicit s: Session): Int =
-    IssueComments.autoInc insert (
+    IssueComments.autoInc insert IssueComment(
-        owner,
+        userName          = owner,
-        repository,
+        repositoryName    = repository,
-        issueId,
+        issueId           = issueId,
-        action,
+        action            = action,
-        loginUser,
+        commentedUserName = loginUser,
-        content,
+        content           = content,
-        currentDate,
+        registeredDate    = currentDate,
-        currentDate)
+        updatedDate       = currentDate)
 
   def updateIssue(owner: String, repository: String, issueId: Int,
-      title: String, content: Option[String]) =
+      title: String, content: Option[String])(implicit s: Session) =
     Issues
       .filter (_.byPrimaryKey(owner, repository, issueId))
       .map { t =>
-        t.title ~ t.content.? ~ t.updatedDate
+        (t.title, t.content.?, t.updatedDate)
       }
       .update (title, content, currentDate)
 
-  def updateAssignedUserName(owner: String, repository: String, issueId: Int, assignedUserName: Option[String]) =
+  def updateAssignedUserName(owner: String, repository: String, issueId: Int,
+                             assignedUserName: Option[String])(implicit s: Session) =
     Issues.filter (_.byPrimaryKey(owner, repository, issueId)).map(_.assignedUserName?).update (assignedUserName)
 
-  def updateMilestoneId(owner: String, repository: String, issueId: Int, milestoneId: Option[Int]) =
+  def updateMilestoneId(owner: String, repository: String, issueId: Int,
+                        milestoneId: Option[Int])(implicit s: Session) =
     Issues.filter (_.byPrimaryKey(owner, repository, issueId)).map(_.milestoneId?).update (milestoneId)
 
-  def updateComment(commentId: Int, content: String) =
+  def updateComment(commentId: Int, content: String)(implicit s: Session) =
     IssueComments
       .filter (_.byPrimaryKey(commentId))
       .map { t =>
-        t.content ~ t.updatedDate
+        t.content -> t.updatedDate
       }
       .update (content, currentDate)
 
-  def deleteComment(commentId: Int) =
+  def deleteComment(commentId: Int)(implicit s: Session) =
     IssueComments filter (_.byPrimaryKey(commentId)) delete
 
-  def updateClosed(owner: String, repository: String, issueId: Int, closed: Boolean) =
+  def updateClosed(owner: String, repository: String, issueId: Int, closed: Boolean)(implicit s: Session) =
     Issues
       .filter (_.byPrimaryKey(owner, repository, issueId))
       .map { t =>
-        t.closed ~ t.updatedDate
+        t.closed -> t.updatedDate
       }
       .update (closed, currentDate)
 
@@ -268,12 +256,14 @@ trait IssuesService {
    * @param query the keywords separated by whitespace.
    * @return issues with comment count and matched content of issue or comment
    */
-  def searchIssuesByKeyword(owner: String, repository: String, query: String): List[(Issue, Int, String)] = {
+  def searchIssuesByKeyword(owner: String, repository: String, query: String)
-    import scala.slick.driver.H2Driver.likeEncode
+                           (implicit s: Session): List[(Issue, Int, String)] = {
+    import slick.driver.JdbcDriver.likeEncode
     val keywords = splitWords(query.toLowerCase)
 
     // Search Issue
     val issues = Issues
+      .filter(_.byRepository(owner, repository))
       .innerJoin(IssueOutline).on { case (t1, t2) =>
         t1.byIssue(t2.userName, t2.repositoryName, t2.issueId)
       }
@@ -289,6 +279,7 @@ trait IssuesService {
 
     // Search IssueComment
     val comments = IssueComments
+      .filter(_.byRepository(owner, repository))
       .innerJoin(Issues).on { case (t1, t2) =>
         t1.byIssue(t2.userName, t2.repositoryName, t2.issueId)
       }
@@ -305,7 +296,7 @@ trait IssuesService {
       }
 
     issues.union(comments).sortBy { case (issue, commentId, _, _) =>
-      issue.issueId ~ commentId
+      issue.issueId -> commentId
     }.list.splitWith { case ((issue1, _, _, _), (issue2, _, _, _)) =>
       issue1.issueId == issue2.issueId
     }.map { _.head match {
@@ -314,6 +305,14 @@ trait IssuesService {
     }.toList
   }
 
+  def closeIssuesFromMessage(message: String, userName: String, owner: String, repository: String)(implicit s: Session) = {
+    extractCloseId(message).foreach { issueId =>
+      for(issue <- getIssue(owner, repository, issueId) if !issue.closed){
+        createComment(owner, repository, userName, issue.issueId, "Close", "close")
+        updateClosed(owner, repository, issue.issueId, true)
+      }
+    }
+  }
 }
 
 object IssuesService {
@@ -324,22 +323,64 @@ object IssuesService {
   case class IssueSearchCondition(
       labels: Set[String] = Set.empty,
       milestoneId: Option[Option[Int]] = None,
-      repo: Option[String] = None,
+      author: Option[String] = None,
+      assigned: Option[String] = None,
+      mentioned: Option[String] = None,
       state: String = "open",
       sort: String = "created",
-      direction: String = "desc"){
+      direction: String = "desc",
+      visibility: Option[String] = None,
+      groups: Set[String] = Set.empty){
+
+    def isEmpty: Boolean = {
+      labels.isEmpty && milestoneId.isEmpty && author.isEmpty && assigned.isEmpty &&
+        state == "open" && sort == "created" && direction == "desc" && visibility.isEmpty
+    }
+
+    def nonEmpty: Boolean = !isEmpty
+
+    def toFilterString: String = (
+      List(
+        Some(s"is:${state}"),
+        author.map(author => s"author:${author}"),
+        assigned.map(assignee => s"assignee:${assignee}"),
+        mentioned.map(mentioned => s"mentions:${mentioned}")
+      ).flatten ++
+      labels.map(label => s"label:${label}") ++
+      List(
+        milestoneId.map { _ match {
+          case Some(x) => s"milestone:${milestoneId}"
+          case None    => "no:milestone"
+        }},
+        (sort, direction) match {
+          case ("created" , "desc") => None
+          case ("created" , "asc" ) => Some("sort:created-asc")
+          case ("comments", "desc") => Some("sort:comments-desc")
+          case ("comments", "asc" ) => Some("sort:comments-asc")
+          case ("updated" , "desc") => Some("sort:updated-desc")
+          case ("updated" , "asc" ) => Some("sort:updated-asc")
+        },
+        visibility.map(visibility => s"visibility:${visibility}")
+      ).flatten ++
+      groups.map(group => s"group:${group}")
+    ).mkString(" ")
 
     def toURL: String =
       "?" + List(
         if(labels.isEmpty) None else Some("labels=" + urlEncode(labels.mkString(","))),
-        milestoneId.map { id => "milestone=" + (id match {
+        milestoneId.map { _ match {
-          case Some(x) => x.toString
+          case Some(x) => "milestone=" + x
-          case None    => "none"
+          case None    => "milestone=none"
-        })},
+        }},
-        repo.map("for="   + urlEncode(_)),
+        author   .map(x => "author="    + urlEncode(x)),
+        assigned .map(x => "assigned="  + urlEncode(x)),
+        mentioned.map(x => "mentioned=" + urlEncode(x)),
         Some("state="     + urlEncode(state)),
         Some("sort="      + urlEncode(sort)),
-        Some("direction=" + urlEncode(direction))).flatten.mkString("&")
+        Some("direction=" + urlEncode(direction)),
+        visibility.map(x => "visibility=" + urlEncode(x)),
+        if(groups.isEmpty) None else Some("groups=" + urlEncode(groups.mkString(",")))
+      ).flatten.mkString("&")
 
   }
 
@@ -350,17 +391,63 @@ object IssuesService {
       if(value == null || value.isEmpty || (allow.nonEmpty && !allow.contains(value))) None else Some(value)
     }
 
+    /**
+     * Restores IssueSearchCondition instance from filter query.
+     */
+    def apply(filter: String, milestones: Map[String, Int]): IssueSearchCondition = {
+      val conditions = filter.split("[ 　\t]+").map { x =>
+        val dim = x.split(":")
+        dim(0) -> dim(1)
+      }.groupBy(_._1).map { case (key, values) =>
+        key -> values.map(_._2).toSeq
+      }
+
+      val (sort, direction) = conditions.get("sort").flatMap(_.headOption).getOrElse("created-desc") match {
+        case "created-asc"   => ("created" , "asc" )
+        case "comments-desc" => ("comments", "desc")
+        case "comments-asc"  => ("comments", "asc" )
+        case "updated-desc"  => ("comments", "desc")
+        case "updated-asc"   => ("comments", "asc" )
+        case _               => ("created" , "desc")
+      }
+
+      IssueSearchCondition(
+        conditions.get("label").map(_.toSet).getOrElse(Set.empty),
+        conditions.get("milestone").flatMap(_.headOption) match {
+          case None         => None
+          case Some("none") => Some(None)
+          case Some(x)      => milestones.get(x).map(x => Some(x))
+        },
+        conditions.get("author").flatMap(_.headOption),
+        conditions.get("assignee").flatMap(_.headOption),
+        conditions.get("mentions").flatMap(_.headOption),
+        conditions.get("is").getOrElse(Seq.empty).find(x => x == "open" || x == "closed").getOrElse("open"),
+        sort,
+        direction,
+        conditions.get("visibility").flatMap(_.headOption),
+        conditions.get("group").map(_.toSet).getOrElse(Set.empty)
+      )
+    }
+
+    /**
+     * Restores IssueSearchCondition instance from request parameters.
+     */
     def apply(request: HttpServletRequest): IssueSearchCondition =
       IssueSearchCondition(
         param(request, "labels").map(_.split(",").toSet).getOrElse(Set.empty),
-        param(request, "milestone").map{
+        param(request, "milestone").map {
           case "none" => None
           case x      => x.toIntOpt
         },
-        param(request, "for"),
+        param(request, "author"),
+        param(request, "assigned"),
+        param(request, "mentioned"),
         param(request, "state",     Seq("open", "closed")).getOrElse("open"),
         param(request, "sort",      Seq("created", "comments", "updated")).getOrElse("created"),
-        param(request, "direction", Seq("asc", "desc")).getOrElse("desc"))
+        param(request, "direction", Seq("asc", "desc")).getOrElse("desc"),
+        param(request, "visibility"),
+        param(request, "groups").map(_.split(",").toSet).getOrElse(Set.empty)
+      )
 
     def page(request: HttpServletRequest) = try {
       val i = param(request, "page").getOrElse("1").toInt
@@ -370,4 +457,6 @@ object IssuesService {
     }
   }
 
+  case class IssueInfo(issue: Issue, labels: List[Label], milestone: Option[String], commentCount: Int)
+
 }

src/main/scala/service/LabelsService.scala

@@ -1,26 +1,32 @@
 package service
 
-import scala.slick.driver.H2Driver.simple._
+import model.Profile._
-import Database.threadLocalSession
+import profile.simple._
-
+import model.Label
-import model._
 
 trait LabelsService {
 
-  def getLabels(owner: String, repository: String): List[Label] =
+  def getLabels(owner: String, repository: String)(implicit s: Session): List[Label] =
-    Query(Labels).filter(_.byRepository(owner, repository)).sortBy(_.labelName asc).list
+    Labels.filter(_.byRepository(owner, repository)).sortBy(_.labelName asc).list
 
-  def getLabel(owner: String, repository: String, labelId: Int): Option[Label] =
+  def getLabel(owner: String, repository: String, labelId: Int)(implicit s: Session): Option[Label] =
-    Query(Labels).filter(_.byPrimaryKey(owner, repository, labelId)).firstOption
+    Labels.filter(_.byPrimaryKey(owner, repository, labelId)).firstOption
 
-  def createLabel(owner: String, repository: String, labelName: String, color: String): Unit =
+  def createLabel(owner: String, repository: String, labelName: String, color: String)(implicit s: Session): Int =
-    Labels.ins insert (owner, repository, labelName, color)
+    Labels returning Labels.map(_.labelId) += Label(
+      userName       = owner,
+      repositoryName = repository,
+      labelName      = labelName,
+      color          = color
+    )
 
-  def updateLabel(owner: String, repository: String, labelId: Int, labelName: String, color: String): Unit =
+  def updateLabel(owner: String, repository: String, labelId: Int, labelName: String, color: String)
-    Labels.filter(_.byPrimaryKey(owner, repository, labelId)).map(t => t.labelName ~ t.color)
+                 (implicit s: Session): Unit =
+    Labels.filter(_.byPrimaryKey(owner, repository, labelId))
+          .map(t => t.labelName -> t.color)
           .update(labelName, color)
 
-  def deleteLabel(owner: String, repository: String, labelId: Int): Unit = {
+  def deleteLabel(owner: String, repository: String, labelId: Int)(implicit s: Session): Unit = {
     IssueLabels.filter(_.byLabel(owner, repository, labelId)).delete
     Labels.filter(_.byPrimaryKey(owner, repository, labelId)).delete
   }

src/main/scala/service/MilestonesService.scala

@@ -1,39 +1,49 @@
 package service
 
-import scala.slick.driver.H2Driver.simple._
+import model.Profile._
-import Database.threadLocalSession
+import profile.simple._
-
+import model.Milestone
-import model._
+// TODO [Slick 2.0]NOT import directly?
+import model.Profile.dateColumnType
 
 trait MilestonesService {
 
   def createMilestone(owner: String, repository: String, title: String, description: Option[String],
-                      dueDate: Option[java.util.Date]): Unit =
+                      dueDate: Option[java.util.Date])(implicit s: Session): Unit =
-    Milestones.ins insert (owner, repository, title, description, dueDate, None)
+    Milestones insert Milestone(
+      userName       = owner,
+      repositoryName = repository,
+      title          = title,
+      description    = description,
+      dueDate        = dueDate,
+      closedDate     = None
+    )
 
-  def updateMilestone(milestone: Milestone): Unit =
+  def updateMilestone(milestone: Milestone)(implicit s: Session): Unit =
     Milestones
       .filter (t =>  t.byPrimaryKey(milestone.userName, milestone.repositoryName, milestone.milestoneId))
-      .map    (t => t.title ~ t.description.? ~ t.dueDate.? ~ t.closedDate.?)
+      .map    (t => (t.title, t.description.?, t.dueDate.?, t.closedDate.?))
       .update (milestone.title, milestone.description, milestone.dueDate, milestone.closedDate)
 
-  def openMilestone(milestone: Milestone): Unit = updateMilestone(milestone.copy(closedDate = None))
+  def openMilestone(milestone: Milestone)(implicit s: Session): Unit =
+    updateMilestone(milestone.copy(closedDate = None))
 
-  def closeMilestone(milestone: Milestone): Unit = updateMilestone(milestone.copy(closedDate = Some(currentDate)))
+  def closeMilestone(milestone: Milestone)(implicit s: Session): Unit =
+    updateMilestone(milestone.copy(closedDate = Some(currentDate)))
 
-  def deleteMilestone(owner: String, repository: String, milestoneId: Int): Unit = {
+  def deleteMilestone(owner: String, repository: String, milestoneId: Int)(implicit s: Session): Unit = {
     Issues.filter(_.byMilestone(owner, repository, milestoneId)).map(_.milestoneId.?).update(None)
     Milestones.filter(_.byPrimaryKey(owner, repository, milestoneId)).delete
   }
 
-  def getMilestone(owner: String, repository: String, milestoneId: Int): Option[Milestone] =
+  def getMilestone(owner: String, repository: String, milestoneId: Int)(implicit s: Session): Option[Milestone] =
-    Query(Milestones).filter(_.byPrimaryKey(owner, repository, milestoneId)).firstOption
+    Milestones.filter(_.byPrimaryKey(owner, repository, milestoneId)).firstOption
 
-  def getMilestonesWithIssueCount(owner: String, repository: String): List[(Milestone, Int, Int)] = {
+  def getMilestonesWithIssueCount(owner: String, repository: String)(implicit s: Session): List[(Milestone, Int, Int)] = {
     val counts = Issues
-      .filter  { t => (t.byRepository(owner, repository)) && (t.milestoneId isNotNull) }
+      .filter  { t => (t.byRepository(owner, repository)) && (t.milestoneId.? isDefined) }
-      .groupBy { t => t.milestoneId ~ t.closed }
+      .groupBy { t => t.milestoneId -> t.closed }
-      .map     { case (t1, t2) => (t1._1 ~ t1._2) -> t2.length }
+      .map     { case (t1, t2) => t1._1 -> t1._2 -> t2.length }
       .toMap
 
     getMilestones(owner, repository).map { milestone =>
@@ -41,6 +51,7 @@ trait MilestonesService {
     }
   }
 
-  def getMilestones(owner: String, repository: String): List[Milestone] =
+  def getMilestones(owner: String, repository: String)(implicit s: Session): List[Milestone] =
-    Query(Milestones).filter(_.byRepository(owner, repository)).sortBy(_.milestoneId asc).list
+    Milestones.filter(_.byRepository(owner, repository)).sortBy(_.milestoneId asc).list
+
 }

src/main/scala/service/PluginService.scala

@@ -0,0 +1,24 @@
+package service
+
+import model.Profile._
+import profile.simple._
+import model.Plugin
+
+trait PluginService {
+
+  def getPlugins()(implicit s: Session): List[Plugin] =
+    Plugins.sortBy(_.pluginId).list
+
+  def registerPlugin(plugin: Plugin)(implicit s: Session): Unit =
+    Plugins.insert(plugin)
+
+  def updatePlugin(plugin: Plugin)(implicit s: Session): Unit =
+    Plugins.filter(_.pluginId === plugin.pluginId.bind).map(_.version).update(plugin.version)
+
+  def deletePlugin(pluginId: String)(implicit s: Session): Unit =
+    Plugins.filter(_.pluginId === pluginId.bind).delete
+
+  def getPlugin(pluginId: String)(implicit s: Session): Option[Plugin] =
+    Plugins.filter(_.pluginId === pluginId.bind).firstOption
+
+}

src/main/scala/service/PullRequestService.scala

@@ -1,41 +1,63 @@
 package service
 
-import scala.slick.driver.H2Driver.simple._
+import model.Profile._
-import Database.threadLocalSession
+import profile.simple._
-import model._
+import model.{PullRequest, Issue}
-import util.ControlUtil._
 
 trait PullRequestService { self: IssuesService =>
   import PullRequestService._
 
-  def getPullRequest(owner: String, repository: String, issueId: Int): Option[(Issue, PullRequest)] =
+  def getPullRequest(owner: String, repository: String, issueId: Int)
+                    (implicit s: Session): Option[(Issue, PullRequest)] =
     getIssue(owner, repository, issueId.toString).flatMap{ issue =>
-      Query(PullRequests).filter(_.byPrimaryKey(owner, repository, issueId)).firstOption.map{
+      PullRequests.filter(_.byPrimaryKey(owner, repository, issueId)).firstOption.map{
         pullreq => (issue, pullreq)
       }
     }
 
-  def updateCommitIdTo(owner: String, repository: String, issueId: Int, commitIdTo: String): Unit =
+  def updateCommitId(owner: String, repository: String, issueId: Int, commitIdTo: String, commitIdFrom: String)
-    Query(PullRequests).filter(_.byPrimaryKey(owner, repository, issueId)).map(_.commitIdTo).update(commitIdTo)
+                    (implicit s: Session): Unit =
+    PullRequests.filter(_.byPrimaryKey(owner, repository, issueId))
+                .map(pr => pr.commitIdTo -> pr.commitIdFrom)
+                .update((commitIdTo, commitIdFrom))
 
-  def getPullRequestCountGroupByUser(closed: Boolean, owner: String, repository: Option[String]): List[PullRequestCount] =
+  def getPullRequestCountGroupByUser(closed: Boolean, owner: Option[String], repository: Option[String])
-    Query(PullRequests)
+                                    (implicit s: Session): List[PullRequestCount] =
+    PullRequests
       .innerJoin(Issues).on { (t1, t2) => t1.byPrimaryKey(t2.userName, t2.repositoryName, t2.issueId) }
       .filter { case (t1, t2) =>
-        (t2.closed         is closed.bind) &&
+        (t2.closed         === closed.bind) &&
-        (t1.userName       is owner.bind) &&
+        (t1.userName       === owner.get.bind, owner.isDefined) &&
-        (t1.repositoryName is repository.get.bind, repository.isDefined)
+        (t1.repositoryName === repository.get.bind, repository.isDefined)
       }
       .groupBy { case (t1, t2) => t2.openedUserName }
-      .map { case (userName, t) => userName ~ t.length }
+      .map { case (userName, t) => userName -> t.length }
       .sortBy(_._2 desc)
       .list
       .map { x => PullRequestCount(x._1, x._2) }
 
+//  def getAllPullRequestCountGroupByUser(closed: Boolean, userName: String)(implicit s: Session): List[PullRequestCount] =
+//    PullRequests
+//      .innerJoin(Issues).on { (t1, t2) => t1.byPrimaryKey(t2.userName, t2.repositoryName, t2.issueId) }
+//      .innerJoin(Repositories).on { case ((t1, t2), t3) => t2.byRepository(t3.userName, t3.repositoryName) }
+//      .filter { case ((t1, t2), t3) =>
+//        (t2.closed === closed.bind) &&
+//          (
+//            (t3.isPrivate === false.bind) ||
+//            (t3.userName  === userName.bind) ||
+//            (Collaborators.filter { t4 => t4.byRepository(t3.userName, t3.repositoryName) && (t4.collaboratorName === userName.bind)} exists)
+//          )
+//      }
+//      .groupBy { case ((t1, t2), t3) => t2.openedUserName }
+//      .map { case (userName, t) => userName -> t.length }
+//      .sortBy(_._2 desc)
+//      .list
+//      .map { x => PullRequestCount(x._1, x._2) }
+
   def createPullRequest(originUserName: String, originRepositoryName: String, issueId: Int,
         originBranch: String, requestUserName: String, requestRepositoryName: String, requestBranch: String,
-        commitIdFrom: String, commitIdTo: String): Unit =
+        commitIdFrom: String, commitIdTo: String)(implicit s: Session): Unit =
-    PullRequests insert (PullRequest(
+    PullRequests insert PullRequest(
       originUserName,
       originRepositoryName,
       issueId,
@@ -44,16 +66,17 @@ trait PullRequestService { self: IssuesService =>
       requestRepositoryName,
       requestBranch,
       commitIdFrom,
-      commitIdTo))
+      commitIdTo)
 
-  def getPullRequestsByRequest(userName: String, repositoryName: String, branch: String, closed: Boolean): List[PullRequest] =
+  def getPullRequestsByRequest(userName: String, repositoryName: String, branch: String, closed: Boolean)
-    Query(PullRequests)
+                              (implicit s: Session): List[PullRequest] =
+    PullRequests
       .innerJoin(Issues).on { (t1, t2) => t1.byPrimaryKey(t2.userName, t2.repositoryName, t2.issueId) }
       .filter { case (t1, t2) =>
-        (t1.requestUserName       is userName.bind) &&
+        (t1.requestUserName       === userName.bind) &&
-        (t1.requestRepositoryName is repositoryName.bind) &&
+        (t1.requestRepositoryName === repositoryName.bind) &&
-        (t1.requestBranch         is branch.bind) &&
+        (t1.requestBranch         === branch.bind) &&
-        (t2.closed                is closed.bind)
+        (t2.closed                === closed.bind)
       }
       .map { case (t1, t2) => t1 }
       .list

src/main/scala/service/RepositorySearchService.scala

@@ -3,24 +3,24 @@ package service
 import util.{FileUtil, StringUtil, JGitUtil}
 import util.Directory._
 import util.ControlUtil._
-import model.Issue
 import org.eclipse.jgit.revwalk.RevWalk
 import org.eclipse.jgit.treewalk.TreeWalk
-import scala.collection.mutable.ListBuffer
 import org.eclipse.jgit.lib.FileMode
 import org.eclipse.jgit.api.Git
+import model.Profile._
+import profile.simple._
 
-trait
+trait RepositorySearchService { self: IssuesService =>
-RepositorySearchService { self: IssuesService =>
   import RepositorySearchService._
 
-  def countIssues(owner: String, repository: String, query: String): Int =
+  def countIssues(owner: String, repository: String, query: String)(implicit session: Session): Int =
     searchIssuesByKeyword(owner, repository, query).length
 
-  def searchIssues(owner: String, repository: String, query: String): List[IssueSearchResult] =
+  def searchIssues(owner: String, repository: String, query: String)(implicit session: Session): List[IssueSearchResult] =
     searchIssuesByKeyword(owner, repository, query).map { case (issue, commentCount, content) =>
       IssueSearchResult(
         issue.issueId,
+        issue.isPullRequest,
         issue.title,
         issue.openedUserName,
         issue.registeredDate,
@@ -39,7 +39,7 @@ RepositorySearchService { self: IssuesService =>
         Nil
       } else {
         val files = searchRepositoryFiles(git, query)
-        val commits = JGitUtil.getLatestCommitFromPaths(git, files.toList.map(_._1), "HEAD")
+        val commits = JGitUtil.getLatestCommitFromPaths(git, files.map(_._1), "HEAD")
         files.map { case (path, text) =>
           val (highlightText, lineNumber)  = getHighlightText(text, query)
           FileSearchResult(
@@ -60,11 +60,12 @@ RepositorySearchService { self: IssuesService =>
     treeWalk.addTree(revCommit.getTree)
 
     val keywords = StringUtil.splitWords(query.toLowerCase)
-    val list = new ListBuffer[(String, String)]
+    val list = new scala.collection.mutable.ListBuffer[(String, String)]
 
     while (treeWalk.next()) {
-      if(treeWalk.getFileMode(0) != FileMode.TREE){
+      val mode = treeWalk.getFileMode(0)
-        JGitUtil.getContent(git, treeWalk.getObjectId(0), false).foreach { bytes =>
+      if(mode == FileMode.REGULAR_FILE || mode == FileMode.EXECUTABLE_FILE){
+        JGitUtil.getContentFromId(git, treeWalk.getObjectId(0), false).foreach { bytes =>
           if(FileUtil.isText(bytes)){
             val text      = StringUtil.convertFromByteArray(bytes)
             val lowerText = text.toLowerCase
@@ -107,10 +108,11 @@ object RepositorySearchService {
 
   case class SearchResult(
     files : List[(String, String)],
-    issues: List[(Issue, Int, String)])
+    issues: List[(model.Issue, Int, String)])
 
   case class IssueSearchResult(
     issueId: Int,
+    isPullRequest: Boolean,
     title: String,
     openedUserName: String,
     registeredDate: java.util.Date,

src/main/scala/service/RepositoryService.scala

@@ -1,8 +1,8 @@
 package service
 
-import model._
+import model.Profile._
-import scala.slick.driver.H2Driver.simple._
+import profile.simple._
-import Database.threadLocalSession
+import model.{Repository, Account, Collaborator}
 import util.JGitUtil
 
 trait RepositoryService { self: AccountService =>
@@ -20,7 +20,8 @@ trait RepositoryService { self: AccountService =>
    */
   def createRepository(repositoryName: String, userName: String, description: Option[String], isPrivate: Boolean,
                        originRepositoryName: Option[String] = None, originUserName: Option[String] = None,
-                       parentRepositoryName: Option[String] = None, parentUserName: Option[String] = None): Unit = {
+                       parentRepositoryName: Option[String] = None, parentUserName: Option[String] = None)
+                      (implicit s: Session): Unit = {
     Repositories insert
       Repository(
         userName             = userName,
@@ -39,71 +40,93 @@ trait RepositoryService { self: AccountService =>
     IssueId insert (userName, repositoryName, 0)
   }
 
-  def renameRepository(oldUserName: String, oldRepositoryName: String, newUserName: String, newRepositoryName: String): Unit = {
+  def renameRepository(oldUserName: String, oldRepositoryName: String, newUserName: String, newRepositoryName: String)
-    (Query(Repositories) filter { t => t.byRepository(oldUserName, oldRepositoryName) } firstOption).map { repository =>
+                      (implicit s: Session): Unit = {
+    getAccountByUserName(newUserName).foreach { account =>
+      (Repositories filter { t => t.byRepository(oldUserName, oldRepositoryName) } firstOption).map { repository =>
         Repositories insert repository.copy(userName = newUserName, repositoryName = newRepositoryName)
 
-      val webHooks      = Query(WebHooks     ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val webHooks       = WebHooks      .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val milestones    = Query(Milestones   ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val milestones     = Milestones    .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val issueId       = Query(IssueId      ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val issueId        = IssueId       .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val issues        = Query(Issues       ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val issues         = Issues        .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val pullRequests  = Query(PullRequests ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val pullRequests   = PullRequests  .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val labels        = Query(Labels       ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val labels         = Labels        .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val issueComments = Query(IssueComments).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val issueComments  = IssueComments .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val issueLabels   = Query(IssueLabels  ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val issueLabels    = IssueLabels   .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val collaborators = Query(Collaborators).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val commitComments = CommitComments.filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val commitLog     = Query(CommitLog    ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
+        val collaborators  = Collaborators .filter(_.byRepository(oldUserName, oldRepositoryName)).list
-      val activities    = Query(Activities   ).filter(_.byRepository(oldUserName, oldRepositoryName)).list
 
         Repositories.filter { t =>
-        (t.originUserName is oldUserName.bind) && (t.originRepositoryName is oldRepositoryName.bind)
+          (t.originUserName === oldUserName.bind) && (t.originRepositoryName === oldRepositoryName.bind)
-      }.map { t => t.originUserName ~ t.originRepositoryName }.update(newUserName, newRepositoryName)
+        }.map { t => t.originUserName -> t.originRepositoryName }.update(newUserName, newRepositoryName)
 
         Repositories.filter { t =>
-        (t.parentUserName is oldUserName.bind) && (t.parentRepositoryName is oldRepositoryName.bind)
+          (t.parentUserName === oldUserName.bind) && (t.parentRepositoryName === oldRepositoryName.bind)
-      }.map { t => t.originUserName ~ t.originRepositoryName }.update(newUserName, newRepositoryName)
+        }.map { t => t.originUserName -> t.originRepositoryName }.update(newUserName, newRepositoryName)
 
         PullRequests.filter { t =>
-        t.requestRepositoryName is oldRepositoryName.bind
+          t.requestRepositoryName === oldRepositoryName.bind
-      }.map { t => t.requestUserName ~ t.requestRepositoryName }.update(newUserName, newRepositoryName)
+        }.map { t => t.requestUserName -> t.requestRepositoryName }.update(newUserName, newRepositoryName)
+
+        // Updates activity fk before deleting repository because activity is sorted by activityId
+        // and it can't be changed by deleting-and-inserting record.
+        Activities.filter(_.byRepository(oldUserName, oldRepositoryName)).list.foreach { activity =>
+          Activities.filter(_.activityId === activity.activityId.bind)
+            .map(x => (x.userName, x.repositoryName)).update(newUserName, newRepositoryName)
+        }
 
         deleteRepository(oldUserName, oldRepositoryName)
 
         WebHooks  .insertAll(webHooks      .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-      Milestones    .insertAll(milestones    .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+        Milestones.insertAll(milestones    .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         IssueId   .insertAll(issueId       .map(_.copy(_1       = newUserName, _2             = newRepositoryName)) :_*)
-      Issues        .insertAll(issues        .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+
+        val newMilestones = Milestones.filter(_.byRepository(newUserName, newRepositoryName)).list
+        Issues.insertAll(issues.map { x => x.copy(
+          userName       = newUserName,
+          repositoryName = newRepositoryName,
+          milestoneId    = x.milestoneId.map { id =>
+            newMilestones.find(_.title == milestones.find(_.milestoneId == id).get.title).get.milestoneId
+          }
+        )} :_*)
+
         PullRequests  .insertAll(pullRequests  .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         IssueComments .insertAll(issueComments .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         Labels        .insertAll(labels        .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
         IssueLabels   .insertAll(issueLabels   .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-      Collaborators .insertAll(collaborators .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+        CommitComments.insertAll(commitComments.map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-      CommitLog     .insertAll(commitLog     .map(_.copy(_1       = newUserName, _2             = newRepositoryName)) :_*)
+
-      Activities    .insertAll(activities    .map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+        if(account.isGroupAccount){
+          Collaborators.insertAll(getGroupMembers(newUserName).map(m => Collaborator(newUserName, newRepositoryName, m.userName)) :_*)
+        } else {
+          Collaborators.insertAll(collaborators.map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
+        }
 
         // Update activity messages
-      val updateActivities = Activities.filter { t =>
+        Activities.filter { t =>
           (t.message like s"%:${oldUserName}/${oldRepositoryName}]%") ||
-        (t.message like s"%:${oldUserName}/${oldRepositoryName}#%")
+          (t.message like s"%:${oldUserName}/${oldRepositoryName}#%") ||
-      }.map { t => t.activityId ~ t.message }.list
+          (t.message like s"%:${oldUserName}/${oldRepositoryName}@%")
-
+        }.map { t => t.activityId -> t.message }.list.foreach { case (activityId, message) =>
-      updateActivities.foreach { case (activityId, message) =>
+          Activities.filter(_.activityId === activityId.bind).map(_.message).update(
-        Activities.filter(_.activityId is activityId.bind).map(_.message).update(
             message
               .replace(s"[repo:${oldUserName}/${oldRepositoryName}]"   ,s"[repo:${newUserName}/${newRepositoryName}]")
               .replace(s"[branch:${oldUserName}/${oldRepositoryName}#" ,s"[branch:${newUserName}/${newRepositoryName}#")
               .replace(s"[tag:${oldUserName}/${oldRepositoryName}#"    ,s"[tag:${newUserName}/${newRepositoryName}#")
               .replace(s"[pullreq:${oldUserName}/${oldRepositoryName}#",s"[pullreq:${newUserName}/${newRepositoryName}#")
               .replace(s"[issue:${oldUserName}/${oldRepositoryName}#"  ,s"[issue:${newUserName}/${newRepositoryName}#")
+              .replace(s"[commit:${oldUserName}/${oldRepositoryName}@" ,s"[commit:${newUserName}/${newRepositoryName}@")
           )
         }
       }
     }
+  }
 
-  def deleteRepository(userName: String, repositoryName: String): Unit = {
+  def deleteRepository(userName: String, repositoryName: String)(implicit s: Session): Unit = {
     Activities    .filter(_.byRepository(userName, repositoryName)).delete
-    CommitLog     .filter(_.byRepository(userName, repositoryName)).delete
     Collaborators .filter(_.byRepository(userName, repositoryName)).delete
+    CommitComments.filter(_.byRepository(userName, repositoryName)).delete
     IssueLabels   .filter(_.byRepository(userName, repositoryName)).delete
     Labels        .filter(_.byRepository(userName, repositoryName)).delete
     IssueComments .filter(_.byRepository(userName, repositoryName)).delete
@@ -113,6 +136,30 @@ trait RepositoryService { self: AccountService =>
     Milestones    .filter(_.byRepository(userName, repositoryName)).delete
     WebHooks      .filter(_.byRepository(userName, repositoryName)).delete
     Repositories  .filter(_.byRepository(userName, repositoryName)).delete
+
+    // Update ORIGIN_USER_NAME and ORIGIN_REPOSITORY_NAME
+    Repositories
+      .filter { x => (x.originUserName === userName.bind) && (x.originRepositoryName === repositoryName.bind) }
+      .map    { x => (x.userName, x.repositoryName) }
+      .list
+      .foreach { case (userName, repositoryName) =>
+        Repositories
+          .filter(_.byRepository(userName, repositoryName))
+          .map(x => (x.originUserName?, x.originRepositoryName?))
+          .update(None, None)
+      }
+
+    // Update PARENT_USER_NAME and PARENT_REPOSITORY_NAME
+    Repositories
+      .filter { x => (x.parentUserName === userName.bind) && (x.parentRepositoryName === repositoryName.bind) }
+      .map    { x => (x.userName, x.repositoryName) }
+      .list
+      .foreach { case (userName, repositoryName) =>
+        Repositories
+          .filter(_.byRepository(userName, repositoryName))
+          .map(x => (x.parentUserName?, x.parentRepositoryName?))
+          .update(None, None)
+      }
   }
 
   /**
@@ -121,8 +168,8 @@ trait RepositoryService { self: AccountService =>
    * @param userName the user name of repository owner
    * @return the list of repository names
    */
-  def getRepositoryNamesOfUser(userName: String): List[String] =
+  def getRepositoryNamesOfUser(userName: String)(implicit s: Session): List[String] =
-    Query(Repositories) filter(_.userName is userName.bind) map (_.repositoryName) list
+    Repositories filter(_.userName === userName.bind) map (_.repositoryName) list
 
   /**
    * Returns the specified repository information.
@@ -132,37 +179,61 @@ trait RepositoryService { self: AccountService =>
    * @param baseUrl the base url of this application
    * @return the repository information
    */
-  def getRepository(userName: String, repositoryName: String, baseUrl: String): Option[RepositoryInfo] = {
+  def getRepository(userName: String, repositoryName: String, baseUrl: String)(implicit s: Session): Option[RepositoryInfo] = {
-    (Query(Repositories) filter { t => t.byRepository(userName, repositoryName) } firstOption) map { repository =>
+    (Repositories filter { t => t.byRepository(userName, repositoryName) } firstOption) map { repository =>
       // for getting issue count and pull request count
-      val issues = Query(Issues).filter { t =>
+      val issues = Issues.filter { t =>
-        t.byRepository(repository.userName, repository.repositoryName) && (t.closed is false.bind)
+        t.byRepository(repository.userName, repository.repositoryName) && (t.closed === false.bind)
       }.map(_.pullRequest).list
 
       new RepositoryInfo(
         JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl),
         repository,
         issues.size,
-        issues.filter(_ == true).size,
+        issues.count(_ == true),
         getForkedCount(
           repository.originUserName.getOrElse(repository.userName),
           repository.originRepositoryName.getOrElse(repository.repositoryName)
-        ))
+        ),
+        getRepositoryManagers(repository.userName))
     }
   }
 
-  def getUserRepositories(userName: String, baseUrl: String): List[RepositoryInfo] = {
+  /**
-    Query(Repositories).filter { t1 =>
+   * Returns the repositories without private repository that user does not have access right.
-      (t1.userName is userName.bind) ||
+   * Include public repository, private own repository and private but collaborator repository.
-        (Query(Collaborators).filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) && (t2.collaboratorName is userName.bind)} exists)
+   *
+   * @param userName the user name of collaborator
+   * @return the repository infomation list
+   */
+  def getAllRepositories(userName: String)(implicit s: Session): List[(String, String)] = {
+    Repositories.filter { t1 =>
+      (t1.isPrivate === false.bind) ||
+      (t1.userName  === userName.bind) ||
+      (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) && (t2.collaboratorName === userName.bind)} exists)
+    }.sortBy(_.lastActivityDate desc).map{ t =>
+      (t.userName, t.repositoryName)
+    }.list
+  }
+
+  def getUserRepositories(userName: String, baseUrl: String, withoutPhysicalInfo: Boolean = false)
+                         (implicit s: Session): List[RepositoryInfo] = {
+    Repositories.filter { t1 =>
+      (t1.userName === userName.bind) ||
+        (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) && (t2.collaboratorName === userName.bind)} exists)
     }.sortBy(_.lastActivityDate desc).list.map{ repository =>
       new RepositoryInfo(
-        JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl),
+        if(withoutPhysicalInfo){
+          new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+        } else {
+          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+        },
         repository,
         getForkedCount(
           repository.originUserName.getOrElse(repository.userName),
           repository.originRepositoryName.getOrElse(repository.repositoryName)
-        ))
+        ),
+        getRepositoryManagers(repository.userName))
     }
   }
 
@@ -173,45 +244,61 @@ trait RepositoryService { self: AccountService =>
    * @param loginAccount the logged in account
    * @param baseUrl the base url of this application
    * @param repositoryUserName the repository owner (if None then returns all repositories which are visible for logged in user)
+   * @param withoutPhysicalInfo if true then the result does not include physical repository information such as commit count,
+   *                            branches and tags
    * @return the repository information which is sorted in descending order of lastActivityDate.
    */
-  def getVisibleRepositories(loginAccount: Option[Account], baseUrl: String, repositoryUserName: Option[String] = None): List[RepositoryInfo] = {
+  def getVisibleRepositories(loginAccount: Option[Account], baseUrl: String, repositoryUserName: Option[String] = None,
+                             withoutPhysicalInfo: Boolean = false)
+                            (implicit s: Session): List[RepositoryInfo] = {
     (loginAccount match {
       // for Administrators
-      case Some(x) if(x.isAdmin) => Query(Repositories)
+      case Some(x) if(x.isAdmin) => Repositories
       // for Normal Users
       case Some(x) if(!x.isAdmin) =>
-        Query(Repositories) filter { t => (t.isPrivate is false.bind) || (t.userName is x.userName) ||
+        Repositories filter { t => (t.isPrivate === false.bind) || (t.userName === x.userName) ||
-          (Query(Collaborators).filter { t2 => t2.byRepository(t.userName, t.repositoryName) && (t2.collaboratorName is x.userName.bind)} exists)
+          (Collaborators.filter { t2 => t2.byRepository(t.userName, t.repositoryName) && (t2.collaboratorName === x.userName.bind)} exists)
         }
       // for Guests
-      case None => Query(Repositories) filter(_.isPrivate is false.bind)
+      case None => Repositories filter(_.isPrivate === false.bind)
     }).filter { t =>
-      repositoryUserName.map { userName => t.userName is userName.bind } getOrElse ConstColumn.TRUE
+      repositoryUserName.map { userName => t.userName === userName.bind } getOrElse LiteralColumn(true)
     }.sortBy(_.lastActivityDate desc).list.map{ repository =>
       new RepositoryInfo(
-        JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl),
+        if(withoutPhysicalInfo){
+          new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+        } else {
+          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+        },
         repository,
         getForkedCount(
           repository.originUserName.getOrElse(repository.userName),
           repository.originRepositoryName.getOrElse(repository.repositoryName)
-        ))
+        ),
+        getRepositoryManagers(repository.userName))
     }
   }
 
+  private def getRepositoryManagers(userName: String)(implicit s: Session): Seq[String] =
+    if(getAccountByUserName(userName).exists(_.isGroupAccount)){
+      getGroupMembers(userName).collect { case x if(x.isManager) => x.userName }
+    } else {
+      Seq(userName)
+    }
+
   /**
    * Updates the last activity date of the repository.
    */
-  def updateLastActivityDate(userName: String, repositoryName: String): Unit =
+  def updateLastActivityDate(userName: String, repositoryName: String)(implicit s: Session): Unit =
     Repositories.filter(_.byRepository(userName, repositoryName)).map(_.lastActivityDate).update(currentDate)
 
   /**
    * Save repository options.
    */
   def saveRepositoryOptions(userName: String, repositoryName: String, 
-      description: Option[String], defaultBranch: String, isPrivate: Boolean): Unit =
+      description: Option[String], defaultBranch: String, isPrivate: Boolean)(implicit s: Session): Unit =
     Repositories.filter(_.byRepository(userName, repositoryName))
-      .map { r => r.description.? ~ r.defaultBranch ~ r.isPrivate ~ r.updatedDate }
+      .map { r => (r.description.?, r.defaultBranch, r.isPrivate, r.updatedDate) }
       .update (description, defaultBranch, isPrivate, currentDate)
 
   /**
@@ -221,8 +308,8 @@ trait RepositoryService { self: AccountService =>
    * @param repositoryName the repository name
    * @param collaboratorName the collaborator name
    */
-  def addCollaborator(userName: String, repositoryName: String, collaboratorName: String): Unit =
+  def addCollaborator(userName: String, repositoryName: String, collaboratorName: String)(implicit s: Session): Unit =
-    Collaborators insert(Collaborator(userName, repositoryName, collaboratorName))
+    Collaborators insert Collaborator(userName, repositoryName, collaboratorName)
 
   /**
    * Remove collaborator from the repository.
@@ -231,7 +318,7 @@ trait RepositoryService { self: AccountService =>
    * @param repositoryName the repository name
    * @param collaboratorName the collaborator name
    */
-  def removeCollaborator(userName: String, repositoryName: String, collaboratorName: String): Unit =
+  def removeCollaborator(userName: String, repositoryName: String, collaboratorName: String)(implicit s: Session): Unit =
     Collaborators.filter(_.byPrimaryKey(userName, repositoryName, collaboratorName)).delete
 
   /**
@@ -240,7 +327,7 @@ trait RepositoryService { self: AccountService =>
    * @param userName the user name of the repository owner
    * @param repositoryName the repository name
    */
-  def removeCollaborators(userName: String, repositoryName: String): Unit =
+  def removeCollaborators(userName: String, repositoryName: String)(implicit s: Session): Unit =
     Collaborators.filter(_.byRepository(userName, repositoryName)).delete
 
   /**
@@ -250,10 +337,10 @@ trait RepositoryService { self: AccountService =>
    * @param repositoryName the repository name
    * @return the list of collaborators name
    */
-  def getCollaborators(userName: String, repositoryName: String): List[String] =
+  def getCollaborators(userName: String, repositoryName: String)(implicit s: Session): List[String] =
-    Query(Collaborators).filter(_.byRepository(userName, repositoryName)).sortBy(_.collaboratorName).map(_.collaboratorName).list
+    Collaborators.filter(_.byRepository(userName, repositoryName)).sortBy(_.collaboratorName).map(_.collaboratorName).list
 
-  def hasWritePermission(owner: String, repository: String, loginAccount: Option[Account]): Boolean = {
+  def hasWritePermission(owner: String, repository: String, loginAccount: Option[Account])(implicit s: Session): Boolean = {
     loginAccount match {
       case Some(a) if(a.isAdmin) => true
       case Some(a) if(a.userName == owner) => true
@@ -262,37 +349,41 @@ trait RepositoryService { self: AccountService =>
     }
   }
 
-  private def getForkedCount(userName: String, repositoryName: String): Int =
+  private def getForkedCount(userName: String, repositoryName: String)(implicit s: Session): Int =
     Query(Repositories.filter { t =>
-      (t.originUserName is userName.bind) && (t.originRepositoryName is repositoryName.bind)
+      (t.originUserName === userName.bind) && (t.originRepositoryName === repositoryName.bind)
     }.length).first
 
 
-  def getForkedRepositories(userName: String, repositoryName: String): List[(String, String)] =
+  def getForkedRepositories(userName: String, repositoryName: String)(implicit s: Session): List[(String, String)] =
-    Query(Repositories).filter { t =>
+    Repositories.filter { t =>
-      (t.originUserName is userName.bind) && (t.originRepositoryName is repositoryName.bind)
+      (t.originUserName === userName.bind) && (t.originRepositoryName === repositoryName.bind)
     }
-    .sortBy(_.userName asc).map(t => t.userName ~ t.repositoryName).list
+    .sortBy(_.userName asc).map(t => t.userName -> t.repositoryName).list
 
 }
 
 object RepositoryService {
 
-  case class RepositoryInfo(owner: String, name: String, url: String, repository: Repository,
+  case class RepositoryInfo(owner: String, name: String, httpUrl: String, repository: Repository,
     issueCount: Int, pullCount: Int, commitCount: Int, forkedCount: Int,
-    branchList: List[String], tags: List[util.JGitUtil.TagInfo]){
+    branchList: Seq[String], tags: Seq[util.JGitUtil.TagInfo], managers: Seq[String]){
+
+    lazy val host = """^https?://(.+?)(:\d+)?/""".r.findFirstMatchIn(httpUrl).get.group(1)
+
+    def sshUrl(port: Int, userName: String) = s"ssh://${userName}@${host}:${port}/${owner}/${name}.git"
 
     /**
      * Creates instance with issue count and pull request count.
      */
-    def this(repo: JGitUtil.RepositoryInfo, model: Repository, issueCount: Int, pullCount: Int, forkedCount: Int) =
+    def this(repo: JGitUtil.RepositoryInfo, model: Repository, issueCount: Int, pullCount: Int, forkedCount: Int, managers: Seq[String]) =
-      this(repo.owner, repo.name, repo.url, model, issueCount, pullCount, repo.commitCount, forkedCount, repo.branchList, repo.tags)
+      this(repo.owner, repo.name, repo.url, model, issueCount, pullCount, repo.commitCount, forkedCount, repo.branchList, repo.tags, managers)
 
     /**
      * Creates instance without issue count and pull request count.
      */
-    def this(repo: JGitUtil.RepositoryInfo, model: Repository, forkedCount: Int) =
+    def this(repo: JGitUtil.RepositoryInfo, model: Repository, forkedCount: Int, managers: Seq[String]) =
-      this(repo.owner, repo.name, repo.url, model, 0, 0, repo.commitCount, forkedCount, repo.branchList, repo.tags)
+      this(repo.owner, repo.name, repo.url, model, 0, 0, repo.commitCount, forkedCount, repo.branchList, repo.tags, managers)
   }
 
   case class RepositoryTreeNode(owner: String, name: String, children: List[RepositoryTreeNode])

src/main/scala/service/RequestCache.scala

@@ -1,7 +1,7 @@
 package service
 
-import model._
+import model.{Account, Issue, Session}
-import service.SystemSettingsService.SystemSettings
+import util.Implicits.request2Session
 
 /**
  * This service is used for a view helper mainly.
@@ -9,29 +9,29 @@ import service.SystemSettingsService.SystemSettings
  * It may be called many times in one request, so each method stores
  * its result into the cache which available during a request.
  */
-trait RequestCache {
+trait RequestCache extends SystemSettingsService with AccountService with IssuesService {
 
-  def getSystemSettings()(implicit context: app.Context): SystemSettings =
+  private implicit def context2Session(implicit context: app.Context): Session =
-    context.cache("system_settings"){
+    request2Session(context.request)
-      new SystemSettingsService {}.loadSystemSettings()
-    }
 
-  def getIssue(userName: String, repositoryName: String, issueId: String)(implicit context: app.Context): Option[Issue] = {
+  def getIssue(userName: String, repositoryName: String, issueId: String)
+              (implicit context: app.Context): Option[Issue] = {
     context.cache(s"issue.${userName}/${repositoryName}#${issueId}"){
-      new IssuesService {}.getIssue(userName, repositoryName, issueId)
+      super.getIssue(userName, repositoryName, issueId)
     }
   }
 
-  def getAccountByUserName(userName: String)(implicit context: app.Context): Option[Account] = {
+  def getAccountByUserName(userName: String)
+                          (implicit context: app.Context): Option[Account] = {
     context.cache(s"account.${userName}"){
-      new AccountService {}.getAccountByUserName(userName)
+      super.getAccountByUserName(userName)
     }
   }
 
-  def getAccountByMailAddress(mailAddress: String)(implicit context: app.Context): Option[Account] = {
+  def getAccountByMailAddress(mailAddress: String)
+                             (implicit context: app.Context): Option[Account] = {
     context.cache(s"account.${mailAddress}"){
-      new AccountService {}.getAccountByMailAddress(mailAddress)
+      super.getAccountByMailAddress(mailAddress)
     }
   }
 }
-

src/main/scala/service/SshKeyService.scala

@@ -0,0 +1,18 @@
+package service
+
+import model.Profile._
+import profile.simple._
+import model.SshKey
+
+trait SshKeyService {
+
+  def addPublicKey(userName: String, title: String, publicKey: String)(implicit s: Session): Unit =
+    SshKeys insert SshKey(userName = userName, title = title, publicKey = publicKey)
+
+  def getPublicKeys(userName: String)(implicit s: Session): List[SshKey] =
+    SshKeys.filter(_.userName === userName.bind).sortBy(_.sshKeyId).list
+
+  def deletePublicKey(userName: String, sshKeyId: Int)(implicit s: Session): Unit =
+    SshKeys filter (_.byPrimaryKey(userName, sshKeyId)) delete
+
+}

src/main/scala/service/SystemSettingsService.scala

@@ -7,18 +7,17 @@ import javax.servlet.http.HttpServletRequest
 
 trait SystemSettingsService {
 
-  def baseUrl(implicit request: HttpServletRequest): String = loadSystemSettings().baseUrl.getOrElse {
+  def baseUrl(implicit request: HttpServletRequest): String = loadSystemSettings().baseUrl(request)
-    defining(request.getRequestURL.toString){ url =>
-      url.substring(0, url.length - (request.getRequestURI.length - request.getContextPath.length))
-    }
-  }.replaceFirst("/$", "")
 
   def saveSystemSettings(settings: SystemSettings): Unit = {
     defining(new java.util.Properties()){ props =>
-      settings.baseUrl.foreach(props.setProperty(BaseURL, _))
+      settings.baseUrl.foreach(x => props.setProperty(BaseURL, x.replaceFirst("/\\Z", "")))
+      settings.information.foreach(x => props.setProperty(Information, x))
       props.setProperty(AllowAccountRegistration, settings.allowAccountRegistration.toString)
       props.setProperty(Gravatar, settings.gravatar.toString)
       props.setProperty(Notification, settings.notification.toString)
+      props.setProperty(Ssh, settings.ssh.toString)
+      settings.sshPort.foreach(x => props.setProperty(SshPort, x.toString))
       if(settings.notification) {
         settings.smtp.foreach { smtp =>
           props.setProperty(SmtpHost, smtp.host)
@@ -39,13 +38,16 @@ trait SystemSettingsService {
           ldap.bindPassword.foreach(x => props.setProperty(LdapBindPassword, x))
           props.setProperty(LdapBaseDN, ldap.baseDN)
           props.setProperty(LdapUserNameAttribute, ldap.userNameAttribute)
+          ldap.additionalFilterCondition.foreach(x => props.setProperty(LdapAdditionalFilterCondition, x))
           ldap.fullNameAttribute.foreach(x => props.setProperty(LdapFullNameAttribute, x))
-          props.setProperty(LdapMailAddressAttribute, ldap.mailAttribute)
+          ldap.mailAttribute.foreach(x => props.setProperty(LdapMailAddressAttribute, x))
           ldap.tls.foreach(x => props.setProperty(LdapTls, x.toString))
           ldap.keystore.foreach(x => props.setProperty(LdapKeystore, x))
         }
       }
-      props.store(new java.io.FileOutputStream(GitBucketConf), null)
+      using(new java.io.FileOutputStream(GitBucketConf)){ out =>
+        props.store(out, null)
+      }
     }
   }
 
@@ -53,13 +55,18 @@ trait SystemSettingsService {
   def loadSystemSettings(): SystemSettings = {
     defining(new java.util.Properties()){ props =>
       if(GitBucketConf.exists){
-        props.load(new java.io.FileInputStream(GitBucketConf))
+        using(new java.io.FileInputStream(GitBucketConf)){ in =>
+          props.load(in)
+        }
       }
       SystemSettings(
-        getOptionValue(props, BaseURL, None),
+        getOptionValue[String](props, BaseURL, None).map(x => x.replaceFirst("/\\Z", "")),
+        getOptionValue[String](props, Information, None),
         getValue(props, AllowAccountRegistration, false),
         getValue(props, Gravatar, true),
         getValue(props, Notification, false),
+        getValue(props, Ssh, false),
+        getOptionValue(props, SshPort, Some(DefaultSshPort)),
         if(getValue(props, Notification, false)){
           Some(Smtp(
             getValue(props, SmtpHost, ""),
@@ -81,8 +88,9 @@ trait SystemSettingsService {
             getOptionValue(props, LdapBindPassword, None),
             getValue(props, LdapBaseDN, ""),
             getValue(props, LdapUserNameAttribute, ""),
+            getOptionValue(props, LdapAdditionalFilterCondition, None),
             getOptionValue(props, LdapFullNameAttribute, None),
-            getValue(props, LdapMailAddressAttribute, ""),
+            getOptionValue(props, LdapMailAddressAttribute, None),
             getOptionValue[Boolean](props, LdapTls, None),
             getOptionValue(props, LdapKeystore, None)))
         } else {
@@ -99,12 +107,21 @@ object SystemSettingsService {
 
   case class SystemSettings(
     baseUrl: Option[String],
+    information: Option[String],
     allowAccountRegistration: Boolean,
     gravatar: Boolean,
     notification: Boolean,
+    ssh: Boolean,
+    sshPort: Option[Int],
     smtp: Option[Smtp],
     ldapAuthentication: Boolean,
-    ldap: Option[Ldap])
+    ldap: Option[Ldap]){
+    def baseUrl(request: HttpServletRequest): String = baseUrl.getOrElse {
+      defining(request.getRequestURL.toString){ url =>
+        url.substring(0, url.length - (request.getRequestURI.length - request.getContextPath.length))
+      }
+    }.stripSuffix("/")
+  }
 
   case class Ldap(
     host: String,
@@ -113,8 +130,9 @@ object SystemSettingsService {
     bindPassword: Option[String],
     baseDN: String,
     userNameAttribute: String,
+    additionalFilterCondition: Option[String],
     fullNameAttribute: Option[String],
-    mailAttribute: String,
+    mailAttribute: Option[String],
     tls: Option[Boolean],
     keystore: Option[String])
 
@@ -127,13 +145,17 @@ object SystemSettingsService {
     fromAddress: Option[String],
     fromName: Option[String])
 
+  val DefaultSshPort = 29418
   val DefaultSmtpPort = 25
   val DefaultLdapPort = 389
 
   private val BaseURL = "base_url"
+  private val Information = "information"
   private val AllowAccountRegistration = "allow_account_registration"
   private val Gravatar = "gravatar"
   private val Notification = "notification"
+  private val Ssh = "ssh"
+  private val SshPort = "ssh.port"
   private val SmtpHost = "smtp.host"
   private val SmtpPort = "smtp.port"
   private val SmtpUser = "smtp.user"
@@ -148,6 +170,7 @@ object SystemSettingsService {
   private val LdapBindPassword = "ldap.bind_password"
   private val LdapBaseDN = "ldap.baseDN"
   private val LdapUserNameAttribute = "ldap.username_attribute"
+  private val LdapAdditionalFilterCondition = "ldap.additional_filter_condition"
   private val LdapFullNameAttribute = "ldap.fullname_attribute"
   private val LdapMailAddressAttribute = "ldap.mail_attribute"
   private val LdapTls = "ldap.tls"
@@ -172,4 +195,7 @@ object SystemSettingsService {
       else value
     }
 
+  // TODO temporary flag
+  val enablePluginSystem = Option(System.getProperty("enable.plugin")).getOrElse("false").toBoolean
+
 }

src/main/scala/service/WebHookService.scala

@@ -1,9 +1,8 @@
 package service
 
-import scala.slick.driver.H2Driver.simple._
+import model.Profile._
-import Database.threadLocalSession
+import profile.simple._
-
+import model.{WebHook, Account}
-import model._
 import org.slf4j.LoggerFactory
 import service.RepositoryService.RepositoryInfo
 import util.JGitUtil
@@ -12,7 +11,6 @@ import util.JGitUtil.CommitInfo
 import org.eclipse.jgit.api.Git
 import org.apache.http.message.BasicNameValuePair
 import org.apache.http.client.entity.UrlEncodedFormEntity
-import org.apache.http.protocol.HTTP
 import org.apache.http.NameValuePair
 
 trait WebHookService {
@@ -20,14 +18,14 @@ trait WebHookService {
 
   private val logger = LoggerFactory.getLogger(classOf[WebHookService])
 
-  def getWebHookURLs(owner: String, repository: String): List[WebHook] =
+  def getWebHookURLs(owner: String, repository: String)(implicit s: Session): List[WebHook] =
-    Query(WebHooks).filter(_.byRepository(owner, repository)).sortBy(_.url).list
+    WebHooks.filter(_.byRepository(owner, repository)).sortBy(_.url).list
 
-  def addWebHookURL(owner: String, repository: String, url :String): Unit =
+  def addWebHookURL(owner: String, repository: String, url :String)(implicit s: Session): Unit =
-    WebHooks.insert(WebHook(owner, repository, url))
+    WebHooks insert WebHook(owner, repository, url)
 
-  def deleteWebHookURL(owner: String, repository: String, url :String): Unit =
+  def deleteWebHookURL(owner: String, repository: String, url :String)(implicit s: Session): Unit =
-    Query(WebHooks).filter(_.byPrimaryKey(owner, repository, url)).delete
+    WebHooks.filter(_.byPrimaryKey(owner, repository, url)).delete
 
   def callWebHook(owner: String, repository: String, webHookURLs: List[WebHook], payload: WebHookPayload): Unit = {
     import org.json4s._
@@ -46,7 +44,7 @@ trait WebHookService {
       val httpClient = HttpClientBuilder.create.build
 
       webHookURLs.foreach { webHookUrl =>
-        val f = future {
+        val f = Future {
           logger.debug(s"start web hook invocation for ${webHookUrl}")
           val httpPost = new HttpPost(webHookUrl.url)
 
@@ -87,26 +85,26 @@ object WebHookService {
         refName,
         commits.map { commit =>
           val diffs = JGitUtil.getDiffs(git, commit.id, false)
-          val commitUrl = repositoryInfo.url.replaceFirst("/git/", "/").replaceFirst("\\.git$", "") + "/commit/" + commit.id
+          val commitUrl = repositoryInfo.httpUrl.replaceFirst("/git/", "/").stripSuffix(".git") + "/commit/" + commit.id
 
           WebHookCommit(
             id        = commit.id,
             message   = commit.fullMessage,
-            timestamp = commit.time.toString,
+            timestamp = commit.commitTime.toString,
             url       = commitUrl,
             added     = diffs._1.collect { case x if(x.changeType == DiffEntry.ChangeType.ADD)    => x.newPath },
             removed   = diffs._1.collect { case x if(x.changeType == DiffEntry.ChangeType.DELETE) => x.oldPath },
             modified  = diffs._1.collect { case x if(x.changeType != DiffEntry.ChangeType.ADD &&
               x.changeType != DiffEntry.ChangeType.DELETE) => x.newPath },
             author    = WebHookUser(
-              name  = commit.committer,
+              name  = commit.committerName,
-              email = commit.mailAddress
+              email = commit.committerEmailAddress
             )
           )
-        }.toList,
+        },
         WebHookRepository(
           name        = repositoryInfo.name,
-          url         = repositoryInfo.url,
+          url         = repositoryInfo.httpUrl,
           description = repositoryInfo.repository.description.getOrElse(""),
           watchers    = 0,
           forks       = repositoryInfo.forkedCount,

src/main/scala/service/WikiService.scala

@@ -2,20 +2,17 @@ package service
 
 import java.util.Date
 import org.eclipse.jgit.api.Git
-import org.apache.commons.io.FileUtils
 import util._
 import _root_.util.ControlUtil._
-import org.eclipse.jgit.treewalk.{TreeWalk, CanonicalTreeParser}
+import org.eclipse.jgit.treewalk.CanonicalTreeParser
 import org.eclipse.jgit.lib._
-import org.eclipse.jgit.dircache.{DirCache, DirCacheEntry}
+import org.eclipse.jgit.dircache.DirCache
-import org.eclipse.jgit.revwalk.RevWalk
 import org.eclipse.jgit.diff.{DiffEntry, DiffFormatter}
 import java.io.ByteArrayInputStream
 import org.eclipse.jgit.patch._
 import org.eclipse.jgit.api.errors.PatchFormatException
 import scala.collection.JavaConverters._
-import scala.Some
+import service.RepositoryService.RepositoryInfo
-
 
 object WikiService {
   
@@ -40,6 +37,10 @@ object WikiService {
    */
   case class WikiPageHistoryInfo(name: String, committer: String, message: String, date: Date)
 
+  def httpUrl(repository: RepositoryInfo) = repository.httpUrl.replaceFirst("\\.git\\Z", ".wiki.git")
+
+  def sshUrl(repository: RepositoryInfo, settings: SystemSettingsService.SystemSettings, userName: String) =
+    repository.sshUrl(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), userName).replaceFirst("\\.git\\Z", ".wiki.git")
 }
 
 trait WikiService {
@@ -63,7 +64,7 @@ trait WikiService {
       if(!JGitUtil.isEmpty(git)){
         JGitUtil.getFileList(git, "master", ".").find(_.name == pageName + ".md").map { file =>
           WikiPageInfo(file.name, StringUtil.convertFromByteArray(git.getRepository.open(file.id).getBytes),
-                       file.committer, file.time, file.commitId)
+                       file.author, file.time, file.commitId)
         }
       } else None
     }
@@ -92,7 +93,7 @@ trait WikiService {
     using(Git.open(Directory.getWikiRepositoryDir(owner, repository))){ git =>
       JGitUtil.getFileList(git, "master", ".")
         .filter(_.name.endsWith(".md"))
-        .map(_.name.replaceFirst("\\.md$", ""))
+        .map(_.name.stripSuffix(".md"))
         .sortBy(x => x)
     }
   }
@@ -138,7 +139,7 @@ trait WikiService {
           val revertInfo = (p.getFiles.asScala.map { fh =>
             fh.getChangeType match {
               case DiffEntry.ChangeType.MODIFY => {
-                val source = getWikiPage(owner, repository, fh.getNewPath.replaceFirst("\\.md$", "")).map(_.content).getOrElse("")
+                val source = getWikiPage(owner, repository, fh.getNewPath.stripSuffix(".md")).map(_.content).getOrElse("")
                 val applied = PatchUtil.apply(source, patch, fh)
                 if(applied != null){
                   Seq(RevertInfo("ADD", fh.getNewPath, applied))
@@ -170,26 +171,19 @@ trait WikiService {
             val inserter = git.getRepository.newObjectInserter()
             val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
 
-            using(new RevWalk(git.getRepository)){ revWalk =>
+            JGitUtil.processTree(git, headId){ (path, tree) =>
-              using(new TreeWalk(git.getRepository)){ treeWalk =>
-                val index = treeWalk.addTree(revWalk.parseTree(headId))
-                treeWalk.setRecursive(true)
-                while(treeWalk.next){
-                  val path = treeWalk.getPathString
-                  val tree = treeWalk.getTree(index, classOf[CanonicalTreeParser])
               if(revertInfo.find(x => x.filePath == path).isEmpty){
                 builder.add(JGitUtil.createDirCacheEntry(path, tree.getEntryFileMode, tree.getEntryObjectId))
               }
             }
-              }
-            }
 
             revertInfo.filter(_.operation == "ADD").foreach { x =>
               builder.add(JGitUtil.createDirCacheEntry(x.filePath, FileMode.REGULAR_FILE, inserter.insert(Constants.OBJ_BLOB, x.source.getBytes("UTF-8"))))
             }
             builder.finish()
 
-            JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter), committer.fullName, committer.mailAddress,
+            JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+              Constants.HEAD, committer.fullName, committer.mailAddress,
               pageName match {
                 case Some(x) => s"Revert ${from} ... ${to} on ${x}"
                 case None    => s"Revert ${from} ... ${to}"
@@ -221,22 +215,14 @@ trait WikiService {
         var removed  = false
 
         if(headId != null){
-          using(new RevWalk(git.getRepository)){ revWalk =>
+          JGitUtil.processTree(git, headId){ (path, tree) =>
-            using(new TreeWalk(git.getRepository)){ treeWalk =>
-              val index = treeWalk.addTree(revWalk.parseTree(headId))
-              treeWalk.setRecursive(true)
-              while(treeWalk.next){
-                val path = treeWalk.getPathString
-                val tree = treeWalk.getTree(index, classOf[CanonicalTreeParser])
             if(path == currentPageName + ".md" && currentPageName != newPageName){
               removed = true
             } else if(path != newPageName + ".md"){
               builder.add(JGitUtil.createDirCacheEntry(path, tree.getEntryFileMode, tree.getEntryObjectId))
             } else {
               created = false
-                  updated = JGitUtil.getContent(git, tree.getEntryObjectId, true).map(new String(_, "UTF-8") != content).getOrElse(false)
+              updated = JGitUtil.getContentFromId(git, tree.getEntryObjectId, true).map(new String(_, "UTF-8") != content).getOrElse(false)
-                }
-              }
             }
           }
         }
@@ -244,7 +230,8 @@ trait WikiService {
         if(created || updated || removed){
           builder.add(JGitUtil.createDirCacheEntry(newPageName + ".md", FileMode.REGULAR_FILE, inserter.insert(Constants.OBJ_BLOB, content.getBytes("UTF-8"))))
           builder.finish()
-          val newHeadId = JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter), committer.fullName, committer.mailAddress,
+          val newHeadId = JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+            Constants.HEAD, committer.fullName, committer.mailAddress,
             if(message.trim.length == 0) {
               if(removed){
                 s"Rename ${currentPageName} to ${newPageName}"
@@ -257,7 +244,7 @@ trait WikiService {
               message
             })
 
-          Some(newHeadId)
+          Some(newHeadId.getName)
         } else None
       }
     }
@@ -275,25 +262,17 @@ trait WikiService {
         val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
         var removed  = false
 
-          using(new RevWalk(git.getRepository)){ revWalk =>
+        JGitUtil.processTree(git, headId){ (path, tree) =>
-            using(new TreeWalk(git.getRepository)){ treeWalk =>
-              val index = treeWalk.addTree(revWalk.parseTree(headId))
-              treeWalk.setRecursive(true)
-              while(treeWalk.next){
-                val path = treeWalk.getPathString
-                val tree = treeWalk.getTree(index, classOf[CanonicalTreeParser])
           if(path != pageName + ".md"){
             builder.add(JGitUtil.createDirCacheEntry(path, tree.getEntryFileMode, tree.getEntryObjectId))
           } else {
             removed = true
           }
         }
-            }
-
         if(removed){
           builder.finish()
-              JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter), committer, mailAddress, message)
+          JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
-            }
+            Constants.HEAD, committer, mailAddress, message)
         }
       }
     }

src/main/scala/servlet/AutoUpdateListener.scala

@@ -8,7 +8,11 @@ import org.apache.commons.io.IOUtils
 import org.slf4j.LoggerFactory
 import util.Directory._
 import util.ControlUtil._
+import util.JDBCUtil._
 import org.eclipse.jgit.api.Git
+import util.Directory
+import plugin.PluginUpdateJob
+import service.SystemSettingsService
 
 object AutoUpdate {
   
@@ -50,6 +54,87 @@ object AutoUpdate {
    * The history of versions. A head of this sequence is the current BitBucket version.
    */
   val versions = Seq(
+    new Version(2, 7) {
+      override def update(conn: Connection): Unit = {
+        super.update(conn)
+        conn.select("SELECT * FROM REPOSITORY"){ rs =>
+          // Rename attached files directory from /issues to /comments
+          val userName = rs.getString("USER_NAME")
+          val repoName = rs.getString("REPOSITORY_NAME")
+          defining(Directory.getAttachedDir(userName, repoName)){ newDir =>
+            val oldDir = new File(newDir.getParentFile, "issues")
+            if(oldDir.exists && oldDir.isDirectory){
+              oldDir.renameTo(newDir)
+            }
+          }
+          // Update ORIGIN_USER_NAME and ORIGIN_REPOSITORY_NAME if it does not exist
+          val originalUserName = rs.getString("ORIGIN_USER_NAME")
+          val originalRepoName = rs.getString("ORIGIN_REPOSITORY_NAME")
+          if(originalUserName != null && originalRepoName != null){
+            if(conn.selectInt("SELECT COUNT(*) FROM REPOSITORY WHERE USER_NAME = ? AND REPOSITORY_NAME = ?",
+                originalUserName, originalRepoName) == 0){
+              conn.update("UPDATE REPOSITORY SET ORIGIN_USER_NAME = NULL, ORIGIN_REPOSITORY_NAME = NULL " +
+                  "WHERE USER_NAME = ? AND REPOSITORY_NAME = ?", userName, repoName)
+            }
+          }
+          // Update PARENT_USER_NAME and PARENT_REPOSITORY_NAME if it does not exist
+          val parentUserName = rs.getString("PARENT_USER_NAME")
+          val parentRepoName = rs.getString("PARENT_REPOSITORY_NAME")
+          if(parentUserName != null && parentRepoName != null){
+            if(conn.selectInt("SELECT COUNT(*) FROM REPOSITORY WHERE USER_NAME = ? AND REPOSITORY_NAME = ?",
+                parentUserName, parentRepoName) == 0){
+              conn.update("UPDATE REPOSITORY SET PARENT_USER_NAME = NULL, PARENT_REPOSITORY_NAME = NULL " +
+                  "WHERE USER_NAME = ? AND REPOSITORY_NAME = ?", userName, repoName)
+            }
+          }
+        }
+      }
+    },
+    new Version(2, 6),
+    new Version(2, 5),
+    new Version(2, 4),
+    new Version(2, 3) {
+      override def update(conn: Connection): Unit = {
+        super.update(conn)
+        conn.select("SELECT ACTIVITY_ID, ADDITIONAL_INFO FROM ACTIVITY WHERE ACTIVITY_TYPE='push'"){ rs =>
+          val curInfo = rs.getString("ADDITIONAL_INFO")
+          val newInfo = curInfo.split("\n").filter(_ matches "^[0-9a-z]{40}:.*").mkString("\n")
+          if (curInfo != newInfo) {
+            conn.update("UPDATE ACTIVITY SET ADDITIONAL_INFO = ? WHERE ACTIVITY_ID = ?", newInfo, rs.getInt("ACTIVITY_ID"))
+          }
+        }
+        FileUtils.deleteDirectory(Directory.getPluginCacheDir())
+        FileUtils.deleteDirectory(new File(Directory.PluginHome))
+      }
+    },
+    new Version(2, 2),
+    new Version(2, 1),
+    new Version(2, 0){
+      override def update(conn: Connection): Unit = {
+        import eu.medsea.mimeutil.{MimeUtil2, MimeType}
+
+        val mimeUtil = new MimeUtil2()
+        mimeUtil.registerMimeDetector("eu.medsea.mimeutil.detector.MagicMimeMimeDetector")
+
+        super.update(conn)
+        conn.select("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY"){ rs =>
+          defining(Directory.getAttachedDir(rs.getString("USER_NAME"), rs.getString("REPOSITORY_NAME"))){ dir =>
+            if(dir.exists && dir.isDirectory){
+              dir.listFiles.foreach { file =>
+                if(file.getName.indexOf('.') < 0){
+                  val mimeType = MimeUtil2.getMostSpecificMimeType(mimeUtil.getMimeTypes(file, new MimeType("application/octet-stream"))).toString
+                  if(mimeType.startsWith("image/")){
+                    file.renameTo(new File(file.getParent, file.getName + "." + mimeType.split("/")(1)))
+                  }
+                }
+              }
+            }
+          }
+        }
+      }
+    },
+    Version(1, 13),
+    Version(1, 12),
     Version(1, 11),
     Version(1, 10),
     Version(1, 9),
@@ -62,8 +147,7 @@ object AutoUpdate {
       override def update(conn: Connection): Unit = {
         super.update(conn)
         // Fix wiki repository configuration
-        using(conn.createStatement.executeQuery("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY")){ rs =>
+        conn.select("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY"){ rs =>
-          while(rs.next){
           using(Git.open(getWikiRepositoryDir(rs.getString("USER_NAME"), rs.getString("REPOSITORY_NAME")))){ git =>
             defining(git.getRepository.getConfig){ config =>
               if(!config.getBoolean("http", "receivepack", false)){
@@ -74,7 +158,6 @@ object AutoUpdate {
           }
         }
       }
-      }
     },
     Version(1, 2),
     Version(1, 1),
@@ -97,7 +180,7 @@ object AutoUpdate {
    */
   def getCurrentVersion(): Version = {
     if(versionFile.exists){
-      FileUtils.readFileToString(versionFile, "UTF-8").split("\\.") match {
+      FileUtils.readFileToString(versionFile, "UTF-8").trim.split("\\.") match {
         case Array(majorVersion, minorVersion) => {
           versions.find { v => 
             v.majorVersion == majorVersion.toInt && v.minorVersion == minorVersion.toInt
@@ -114,19 +197,24 @@ object AutoUpdate {
  * Update database schema automatically in the context initializing.
  */
 class AutoUpdateListener extends ServletContextListener {
+  import org.quartz.impl.StdSchedulerFactory
   import AutoUpdate._
+
   private val logger = LoggerFactory.getLogger(classOf[AutoUpdateListener])
+  private val scheduler = StdSchedulerFactory.getDefaultScheduler
   
   override def contextInitialized(event: ServletContextEvent): Unit = {
-    val datadir = event.getServletContext.getInitParameter("gitbucket.home")
+    val dataDir = event.getServletContext.getInitParameter("gitbucket.home")
-    if(datadir != null){
+    if(dataDir != null){
-      System.setProperty("gitbucket.home", datadir)
+      System.setProperty("gitbucket.home", dataDir)
     }
     org.h2.Driver.load()
-    event.getServletContext.setInitParameter("db.url", s"jdbc:h2:${DatabaseHome};MVCC=true")
 
-    logger.debug("Start schema update")
+    val context = event.getServletContext
+    context.setInitParameter("db.url", s"jdbc:h2:${DatabaseHome};MVCC=true")
+
     defining(getConnection(event.getServletContext)){ conn =>
+      logger.debug("Start schema update")
       try {
         defining(getCurrentVersion()){ currentVersion =>
           if(currentVersion == headVersion){
@@ -136,7 +224,6 @@ class AutoUpdateListener extends ServletContextListener {
           } else {
             versions.takeWhile(_ != currentVersion).reverse.foreach(_.update(conn))
             FileUtils.writeStringToFile(versionFile, headVersion.versionString, "UTF-8")
-            conn.commit()
             logger.debug(s"Updated from ${currentVersion.versionString} to ${headVersion.versionString}")
           }
         }
@@ -147,12 +234,33 @@ class AutoUpdateListener extends ServletContextListener {
           conn.rollback()
         }
       }
-    }
       logger.debug("End schema update")
     }
 
+    if(SystemSettingsService.enablePluginSystem){
+      getDatabase(context).withSession { implicit session =>
+        logger.debug("Starting plugin system...")
+        try {
+          plugin.PluginSystem.init()
+
+          scheduler.start()
+          PluginUpdateJob.schedule(scheduler)
+          logger.debug("PluginUpdateJob is started.")
+
+          logger.debug("Plugin system is initialized.")
+        } catch {
+          case ex: Throwable => {
+            logger.error("Failed to initialize plugin system", ex)
+            ex.printStackTrace()
+            throw ex
+          }
+        }
+      }
+    }
+  }
+
   def contextDestroyed(sce: ServletContextEvent): Unit = {
-    // Nothing to do.
+    scheduler.shutdown()
   }
 
   private def getConnection(servletContext: ServletContext): Connection =
@@ -161,4 +269,10 @@ class AutoUpdateListener extends ServletContextListener {
       servletContext.getInitParameter("db.user"),
       servletContext.getInitParameter("db.password"))
 
+  private def getDatabase(servletContext: ServletContext): scala.slick.jdbc.JdbcBackend.Database =
+    slick.jdbc.JdbcBackend.Database.forURL(
+      servletContext.getInitParameter("db.url"),
+      servletContext.getInitParameter("db.user"),
+      servletContext.getInitParameter("db.password"))
+
 }

src/main/scala/servlet/BasicAuthenticationFilter.scala

@@ -3,6 +3,7 @@ package servlet
 import javax.servlet._
 import javax.servlet.http._
 import service.{SystemSettingsService, AccountService, RepositoryService}
+import model._
 import org.slf4j.LoggerFactory
 import util.Implicits._
 import util.ControlUtil._
@@ -20,7 +21,7 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
   def destroy(): Unit = {}
   
   def doFilter(req: ServletRequest, res: ServletResponse, chain: FilterChain): Unit = {
-    val request  = req.asInstanceOf[HttpServletRequest]
+    implicit val request  = req.asInstanceOf[HttpServletRequest]
     val response = res.asInstanceOf[HttpServletResponse]
 
     val wrappedResponse = new HttpServletResponseWrapper(response){
@@ -38,10 +39,13 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
               request.getHeader("Authorization") match {
                 case null => requireAuth(response)
                 case auth => decodeAuthHeader(auth).split(":") match {
-                  case Array(username, password) if(isWritableUser(username, password, repository)) => {
+                  case Array(username, password) => getWritableUser(username, password, repository) match {
-                    request.setAttribute(Keys.Request.UserName, username)
+                    case Some(account) => {
+                      request.setAttribute(Keys.Request.UserName, account.userName)
                       chain.doFilter(req, wrappedResponse)
                     }
+                    case None => requireAuth(response)
+                  }
                   case _ => requireAuth(response)
                 }
               }
@@ -61,10 +65,11 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
     }
   }
 
-  private def isWritableUser(username: String, password: String, repository: RepositoryService.RepositoryInfo): Boolean =
+  private def getWritableUser(username: String, password: String, repository: RepositoryService.RepositoryInfo)
+                             (implicit session: Session): Option[Account] =
     authenticate(loadSystemSettings(), username, password) match {
-      case Some(account) => hasWritePermission(repository.owner, repository.name, Some(account))
+      case x @ Some(account) if(hasWritePermission(repository.owner, repository.name, x)) => x
-      case None => false
+      case _ => None
     }
 
   private def requireAuth(response: HttpServletResponse): Unit = {

src/main/scala/servlet/GitRepositoryServlet.scala

@@ -8,7 +8,7 @@ import org.slf4j.LoggerFactory
 
 import javax.servlet.ServletConfig
 import javax.servlet.ServletContext
-import javax.servlet.http.HttpServletRequest
+import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
 import util.{StringUtil, Keys, JGitUtil, Directory}
 import util.ControlUtil._
 import util.Implicits._
@@ -16,6 +16,8 @@ import service._
 import WebHookService._
 import org.eclipse.jgit.api.Git
 import util.JGitUtil.CommitInfo
+import service.IssuesService.IssueSearchCondition
+import model.Session
 
 /**
  * Provides Git repository via HTTP.
@@ -23,7 +25,7 @@ import util.JGitUtil.CommitInfo
  * This servlet provides only Git repository functionality.
  * Authentication is provided by [[servlet.BasicAuthenticationFilter]].
  */
-class GitRepositoryServlet extends GitServlet {
+class GitRepositoryServlet extends GitServlet with SystemSettingsService {
 
   private val logger = LoggerFactory.getLogger(classOf[GitRepositoryServlet])
   
@@ -48,6 +50,18 @@ class GitRepositoryServlet extends GitServlet {
     super.init(config)
   }
 
+  override def service(req: HttpServletRequest, res: HttpServletResponse): Unit = {
+    val agent = req.getHeader("USER-AGENT")
+    val index = req.getRequestURI.indexOf(".git")
+    if(index >= 0 && (agent == null || agent.toLowerCase.indexOf("git/") < 0)){
+      // redirect for browsers
+      val paths = req.getRequestURI.substring(0, index).split("/")
+      res.sendRedirect(baseUrl(req) + "/" + paths.dropRight(1).last + "/" + paths.last)
+    } else {
+      // response for git client
+      super.service(req, res)
+    }
+  }
 }
 
 class GitBucketReceivePackFactory extends ReceivePackFactory[HttpServletRequest] with SystemSettingsService {
@@ -63,12 +77,16 @@ class GitBucketReceivePackFactory extends ReceivePackFactory[HttpServletRequest]
 
     defining(request.paths){ paths =>
       val owner      = paths(1)
-      val repository = paths(2).replaceFirst("\\.git$", "")
+      val repository = paths(2).stripSuffix(".git")
 
       logger.debug("repository:" + owner + "/" + repository)
 
       if(!repository.endsWith(".wiki")){
-        receivePack.setPostReceiveHook(new CommitLogHook(owner, repository, pusher, baseUrl(request)))
+        defining(request) { implicit r =>
+          val hook = new CommitLogHook(owner, repository, pusher, baseUrl)
+          receivePack.setPreReceiveHook(hook)
+          receivePack.setPostReceiveHook(hook)
+        }
       }
       receivePack
     }
@@ -77,43 +95,63 @@ class GitBucketReceivePackFactory extends ReceivePackFactory[HttpServletRequest]
 
 import scala.collection.JavaConverters._
 
-class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl: String) extends PostReceiveHook
+class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl: String)(implicit session: Session)
+  extends PostReceiveHook with PreReceiveHook
   with RepositoryService with AccountService with IssuesService with ActivityService with PullRequestService with WebHookService {
   
   private val logger = LoggerFactory.getLogger(classOf[CommitLogHook])
+  private var existIds: Seq[String] = Nil
+
+  def onPreReceive(receivePack: ReceivePack, commands: java.util.Collection[ReceiveCommand]): Unit = {
+    try {
+      using(Git.open(Directory.getRepositoryDir(owner, repository))) { git =>
+        existIds = JGitUtil.getAllCommitIds(git)
+      }
+    } catch {
+      case ex: Exception => {
+        logger.error(ex.toString, ex)
+        throw ex
+      }
+    }
+  }
 
   def onPostReceive(receivePack: ReceivePack, commands: java.util.Collection[ReceiveCommand]): Unit = {
     try {
       using(Git.open(Directory.getRepositoryDir(owner, repository))) { git =>
+        val pushedIds = scala.collection.mutable.Set[String]()
         commands.asScala.foreach { command =>
           logger.debug(s"commandType: ${command.getType}, refName: ${command.getRefName}")
-          val commits = command.getType match {
+          val refName = command.getRefName.split("/")
+          val branchName = refName.drop(2).mkString("/")
+          val commits = if (refName(1) == "tags") {
+            Nil
+          } else {
+            command.getType match {
               case ReceiveCommand.Type.DELETE => Nil
               case _ => JGitUtil.getCommitLog(git, command.getOldId.name, command.getNewId.name)
             }
-          val refName = command.getRefName.split("/")
+          }
-          val branchName = refName.drop(2).mkString("/")
+
+          // Retrieve all issue count in the repository
+          val issueCount =
+            countIssue(IssueSearchCondition(state = "open"), false, owner -> repository) +
+            countIssue(IssueSearchCondition(state = "closed"), false, owner -> repository)
 
           // Extract new commit and apply issue comment
-          val newCommits = if(commits.size > 1000){
+          val defaultBranch = getRepository(owner, repository, baseUrl).get.repository.defaultBranch
-            val existIds = getAllCommitIds(owner, repository)
+          val newCommits = commits.flatMap { commit =>
-            commits.flatMap { commit =>
+            if (!existIds.contains(commit.id) && !pushedIds.contains(commit.id)) {
-              if(!existIds.contains(commit.id)){
+              if (issueCount > 0) {
+                pushedIds.add(commit.id)
                 createIssueComment(commit)
+                // close issues
+                if(refName(1) == "heads" && branchName == defaultBranch && command.getType == ReceiveCommand.Type.UPDATE){
+                  closeIssuesFromMessage(commit.fullMessage, pusher, owner, repository)
+                }
+              }
               Some(commit)
             } else None
           }
-          } else {
-            commits.flatMap { commit =>
-              if(!existsCommitId(owner, repository, commit.id)){
-                createIssueComment(commit)
-                Some(commit)
-              } else None
-            }
-          }
-
-          // batch insert all new commit id
-          insertAllCommitIds(owner, repository, newCommits.map(_.id))
 
           // record activity
           if(refName(1) == "heads"){
@@ -167,7 +205,7 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
   private def createIssueComment(commit: CommitInfo) = {
     StringUtil.extractIssueId(commit.fullMessage).foreach { issueId =>
       if(getIssue(owner, repository, issueId).isDefined){
-        getAccountByMailAddress(commit.mailAddress).foreach { account =>
+        getAccountByMailAddress(commit.committerEmailAddress).foreach { account =>
           createComment(owner, repository, account.userName, issueId.toInt, commit.fullMessage + " " + commit.id, "commit")
         }
       }
@@ -180,14 +218,18 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
   private def updatePullRequests(branch: String) =
     getPullRequestsByRequest(owner, repository, branch, false).foreach { pullreq =>
       if(getRepository(pullreq.userName, pullreq.repositoryName, baseUrl).isDefined){
-        using(Git.open(Directory.getRepositoryDir(pullreq.userName, pullreq.repositoryName))){ git =>
+        using(Git.open(Directory.getRepositoryDir(pullreq.userName, pullreq.repositoryName)),
-          git.fetch
+              Git.open(Directory.getRepositoryDir(pullreq.requestUserName, pullreq.requestRepositoryName))){ (oldGit, newGit) =>
+          oldGit.fetch
             .setRemote(Directory.getRepositoryDir(owner, repository).toURI.toString)
             .setRefSpecs(new RefSpec(s"refs/heads/${branch}:refs/pull/${pullreq.issueId}/head").setForceUpdate(true))
             .call
 
-          val commitIdTo = git.getRepository.resolve(s"refs/pull/${pullreq.issueId}/head").getName
+          val commitIdTo = oldGit.getRepository.resolve(s"refs/pull/${pullreq.issueId}/head").getName
-          updateCommitIdTo(pullreq.userName, pullreq.repositoryName, pullreq.issueId, commitIdTo)
+          val commitIdFrom = JGitUtil.getForkedCommitId(oldGit, newGit,
+            pullreq.userName, pullreq.repositoryName, pullreq.branch,
+            pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.requestBranch)
+          updateCommitId(pullreq.userName, pullreq.repositoryName, pullreq.issueId, commitIdTo, commitIdFrom)
         }
       }
     }

src/main/scala/servlet/PluginActionInvokeFilter.scala

@@ -0,0 +1,192 @@
+package servlet
+
+import javax.servlet._
+import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
+import org.apache.commons.io.IOUtils
+import play.twirl.api.Html
+import service.{AccountService, RepositoryService, SystemSettingsService}
+import model.{Account, Session}
+import util.{JGitUtil, Keys}
+import plugin.{RawData, Fragment, PluginConnectionHolder, Redirect}
+import service.RepositoryService.RepositoryInfo
+import plugin.Security._
+
+class PluginActionInvokeFilter extends Filter with SystemSettingsService with RepositoryService with AccountService {
+
+  def init(config: FilterConfig) = {}
+
+  def destroy(): Unit = {}
+
+  def doFilter(req: ServletRequest, res: ServletResponse, chain: FilterChain): Unit = {
+    (req, res) match {
+      case (request: HttpServletRequest, response: HttpServletResponse) => {
+        Database(req.getServletContext) withTransaction { implicit session =>
+          val path = request.getRequestURI.substring(request.getServletContext.getContextPath.length)
+          if(!processGlobalAction(path, request, response) && !processRepositoryAction(path, request, response)){
+            chain.doFilter(req, res)
+          }
+        }
+      }
+    }
+  }
+
+  private def processGlobalAction(path: String, request: HttpServletRequest, response: HttpServletResponse)
+                                 (implicit session: Session): Boolean = {
+    plugin.PluginSystem.globalActions.find(x =>
+      x.method.toLowerCase == request.getMethod.toLowerCase && path.matches(x.path)
+    ).map { action =>
+      val loginAccount = request.getSession.getAttribute(Keys.Session.LoginAccount).asInstanceOf[Account]
+      val systemSettings = loadSystemSettings()
+      implicit val context = app.Context(systemSettings, Option(loginAccount), request)
+
+      if(authenticate(action.security, context)){
+        val result = try {
+          PluginConnectionHolder.threadLocal.set(session.conn)
+          action.function(request, response, context)
+        } finally {
+          PluginConnectionHolder.threadLocal.remove()
+        }
+        processActionResult(result, request, response, context)
+      } else {
+        // TODO NotFound or Error?
+      }
+      true
+    } getOrElse false
+  }
+
+  private def processRepositoryAction(path: String, request: HttpServletRequest, response: HttpServletResponse)
+                                     (implicit session: Session): Boolean = {
+    val elements = path.split("/")
+    if(elements.length > 3){
+      val owner  = elements(1)
+      val name   = elements(2)
+      val remain = elements.drop(3).mkString("/", "/", "")
+
+      val loginAccount = request.getSession.getAttribute(Keys.Session.LoginAccount).asInstanceOf[Account]
+      val systemSettings = loadSystemSettings()
+      implicit val context = app.Context(systemSettings, Option(loginAccount), request)
+
+      getRepository(owner, name, systemSettings.baseUrl(request)).flatMap { repository =>
+        plugin.PluginSystem.repositoryActions.find(x => remain.matches(x.path)).map { action =>
+          if(authenticate(action.security, context, repository)){
+            val result = try {
+              PluginConnectionHolder.threadLocal.set(session.conn)
+              action.function(request, response, context, repository)
+            } finally {
+              PluginConnectionHolder.threadLocal.remove()
+            }
+            processActionResult(result, request, response, context)
+          } else {
+            // TODO NotFound or Error?
+          }
+          true
+        }
+      } getOrElse false
+    } else false
+  }
+
+  private def processActionResult(result: Any, request: HttpServletRequest, response: HttpServletResponse,
+                                   context: app.Context): Unit = {
+    result match {
+      case null|None         => renderError(request, response, context, 404)
+      case x: String         => renderGlobalHtml(request, response, context, x)
+      case Some(x: String)   => renderGlobalHtml(request, response, context, x)
+      case x: Html           => renderGlobalHtml(request, response, context, x.toString)
+      case Some(x: Html)     => renderGlobalHtml(request, response, context, x.toString)
+      case x: Fragment       => renderFragmentHtml(request, response, context, x.html.toString)
+      case Some(x: Fragment) => renderFragmentHtml(request, response, context, x.html.toString)
+      case x: RawData        => renderRawData(request, response, context, x)
+      case Some(x: RawData)  => renderRawData(request, response, context, x)
+      case x: Redirect       => response.sendRedirect(x.path)
+      case Some(x: Redirect) => response.sendRedirect(x.path)
+      case x: AnyRef         => renderJson(request, response, x)
+    }
+  }
+
+  /**
+   * Authentication for global action
+   */
+  private def authenticate(security: Security, context: app.Context)(implicit session: Session): Boolean = {
+    // Global Action
+    security match {
+      case All() => true
+      case Login() => context.loginAccount.isDefined
+      case Admin() => context.loginAccount.exists(_.isAdmin)
+      case _ => false // TODO throw Exception?
+    }
+  }
+
+  /**
+   * Authenticate for repository action
+   */
+  private def authenticate(security: Security, context: app.Context, repository: RepositoryInfo)(implicit session: Session): Boolean = {
+    if(repository.repository.isPrivate){
+      // Private Repository
+      security match {
+        case Admin() => context.loginAccount.exists(_.isAdmin)
+        case Owner() => context.loginAccount.exists { account =>
+          account.userName == repository.owner ||
+            getGroupMembers(repository.owner).exists(m => m.userName == account.userName && m.isManager)
+        }
+        case _ => context.loginAccount.exists { account =>
+          account.isAdmin || account.userName == repository.owner ||
+            getCollaborators(repository.owner, repository.name).contains(account.userName)
+        }
+      }
+    } else {
+      // Public Repository
+      security match {
+        case All() => true
+        case Login() => context.loginAccount.isDefined
+        case Owner() => context.loginAccount.exists { account =>
+          account.userName == repository.owner ||
+            getGroupMembers(repository.owner).exists(m => m.userName == account.userName && m.isManager)
+        }
+        case Member() => context.loginAccount.exists { account =>
+          account.userName == repository.owner ||
+            getCollaborators(repository.owner, repository.name).contains(account.userName)
+        }
+        case Admin() => context.loginAccount.exists(_.isAdmin)
+      }
+    }
+  }
+
+  private def renderError(request: HttpServletRequest, response: HttpServletResponse, context: app.Context, error: Int): Unit = {
+    response.sendError(error)
+  }
+
+  private def renderGlobalHtml(request: HttpServletRequest, response: HttpServletResponse, context: app.Context, body: String): Unit = {
+    response.setContentType("text/html; charset=UTF-8")
+    val html = _root_.html.main("GitBucket", None)(Html(body))(context)
+    IOUtils.write(html.toString.getBytes("UTF-8"), response.getOutputStream)
+  }
+
+  private def renderRepositoryHtml(request: HttpServletRequest, response: HttpServletResponse, context: app.Context, repository: RepositoryInfo, body: String): Unit = {
+    response.setContentType("text/html; charset=UTF-8")
+    val html = _root_.html.main("GitBucket", None)(_root_.html.menu("", repository)(Html(body))(context))(context) // TODO specify active side menu
+    IOUtils.write(html.toString.getBytes("UTF-8"), response.getOutputStream)
+  }
+
+  private def renderFragmentHtml(request: HttpServletRequest, response: HttpServletResponse, context: app.Context, body: String): Unit = {
+    response.setContentType("text/html; charset=UTF-8")
+    IOUtils.write(body.getBytes("UTF-8"), response.getOutputStream)
+  }
+
+  private def renderRawData(request: HttpServletRequest, response: HttpServletResponse, context: app.Context, rawData: RawData): Unit = {
+    response.setContentType(rawData.contentType)
+    IOUtils.write(rawData.content, response.getOutputStream)
+  }
+
+  private def renderJson(request: HttpServletRequest, response: HttpServletResponse, obj: AnyRef): Unit = {
+    import org.json4s._
+    import org.json4s.jackson.Serialization
+    import org.json4s.jackson.Serialization.write
+    implicit val formats = Serialization.formats(NoTypeHints)
+
+    val json = write(obj)
+
+    response.setContentType("application/json; charset=UTF-8")
+    IOUtils.write(json.getBytes("UTF-8"), response.getOutputStream)
+  }
+
+}

src/main/scala/servlet/SessionCleanupListener.scala

@@ -1,15 +1,16 @@
 package servlet
 
 import javax.servlet.http.{HttpSessionEvent, HttpSessionListener}
-import app.FileUploadControllerBase
+import org.apache.commons.io.FileUtils
+import util.Directory._
 
 /**
  * Removes session associated temporary files when session is destroyed.
  */
-class SessionCleanupListener extends HttpSessionListener with FileUploadControllerBase {
+class SessionCleanupListener extends HttpSessionListener {
 
   def sessionCreated(se: HttpSessionEvent): Unit = {}
 
-  def sessionDestroyed(se: HttpSessionEvent): Unit = removeTemporaryFiles()(se.getSession)
+  def sessionDestroyed(se: HttpSessionEvent): Unit = FileUtils.deleteDirectory(getTemporaryDir(se.getSession.getId))
 
 }

src/main/scala/servlet/TransactionFilter.scala

@@ -3,6 +3,7 @@ package servlet
 import javax.servlet._
 import org.slf4j.LoggerFactory
 import javax.servlet.http.HttpServletRequest
+import util.Keys
 
 /**
  * Controls the transaction with the open session in view pattern.
@@ -20,8 +21,9 @@ class TransactionFilter extends Filter {
       // assets don't need transaction
       chain.doFilter(req, res)
     } else {
-      Database(req.getServletContext) withTransaction {
+      Database(req.getServletContext) withTransaction { session =>
         logger.debug("begin transaction")
+        req.setAttribute(Keys.Request.DBSession, session)
         chain.doFilter(req, res)
         logger.debug("end transaction")
       }
@@ -31,8 +33,13 @@ class TransactionFilter extends Filter {
 }
 
 object Database {
-  def apply(context: ServletContext): scala.slick.session.Database =
+
-    scala.slick.session.Database.forURL(context.getInitParameter("db.url"),
+  def apply(context: ServletContext): slick.jdbc.JdbcBackend.Database =
+    slick.jdbc.JdbcBackend.Database.forURL(context.getInitParameter("db.url"),
         context.getInitParameter("db.user"),
         context.getInitParameter("db.password"))
+
+  def getSession(req: ServletRequest): slick.jdbc.JdbcBackend#Session =
+    req.getAttribute(Keys.Request.DBSession).asInstanceOf[slick.jdbc.JdbcBackend#Session]
+
 }

src/main/scala/ssh/GitCommand.scala

@@ -0,0 +1,133 @@
+package ssh
+
+import org.apache.sshd.server.{CommandFactory, Environment, ExitCallback, Command}
+import org.slf4j.LoggerFactory
+import java.io.{InputStream, OutputStream}
+import util.ControlUtil._
+import org.eclipse.jgit.api.Git
+import util.Directory._
+import org.eclipse.jgit.transport.{ReceivePack, UploadPack}
+import org.apache.sshd.server.command.UnknownCommand
+import servlet.{Database, CommitLogHook}
+import service.{AccountService, RepositoryService, SystemSettingsService}
+import org.eclipse.jgit.errors.RepositoryNotFoundException
+import javax.servlet.ServletContext
+import model.Session
+
+object GitCommand {
+  val CommandRegex = """\Agit-(upload|receive)-pack '/([a-zA-Z0-9\-_.]+)/([a-zA-Z0-9\-_.]+).git'\Z""".r
+}
+
+abstract class GitCommand(val context: ServletContext, val owner: String, val repoName: String) extends Command {
+  self: RepositoryService with AccountService =>
+
+  private val logger = LoggerFactory.getLogger(classOf[GitCommand])
+  protected var err: OutputStream = null
+  protected var in: InputStream = null
+  protected var out: OutputStream = null
+  protected var callback: ExitCallback = null
+
+  protected def runTask(user: String)(implicit session: Session): Unit
+
+  private def newTask(user: String): Runnable = new Runnable {
+    override def run(): Unit = {
+      Database(context) withSession { implicit session =>
+        try {
+          runTask(user)
+          callback.onExit(0)
+        } catch {
+          case e: RepositoryNotFoundException =>
+            logger.info(e.getMessage)
+            callback.onExit(1, "Repository Not Found")
+          case e: Throwable =>
+            logger.error(e.getMessage, e)
+            callback.onExit(1)
+        }
+      }
+    }
+  }
+
+  override def start(env: Environment): Unit = {
+    val user = env.getEnv.get("USER")
+    val thread = new Thread(newTask(user))
+    thread.start()
+  }
+
+  override def destroy(): Unit = {}
+
+  override def setExitCallback(callback: ExitCallback): Unit = {
+    this.callback = callback
+  }
+
+  override def setErrorStream(err: OutputStream): Unit = {
+    this.err = err
+  }
+
+  override def setOutputStream(out: OutputStream): Unit = {
+    this.out = out
+  }
+
+  override def setInputStream(in: InputStream): Unit = {
+    this.in = in
+  }
+
+  protected def isWritableUser(username: String, repositoryInfo: RepositoryService.RepositoryInfo)
+                              (implicit session: Session): Boolean =
+    getAccountByUserName(username) match {
+      case Some(account) => hasWritePermission(repositoryInfo.owner, repositoryInfo.name, Some(account))
+      case None => false
+    }
+
+}
+
+class GitUploadPack(context: ServletContext, owner: String, repoName: String, baseUrl: String) extends GitCommand(context, owner, repoName)
+    with RepositoryService with AccountService {
+
+  override protected def runTask(user: String)(implicit session: Session): Unit = {
+    getRepository(owner, repoName.replaceFirst("\\.wiki\\Z", ""), baseUrl).foreach { repositoryInfo =>
+      if(!repositoryInfo.repository.isPrivate || isWritableUser(user, repositoryInfo)){
+        using(Git.open(getRepositoryDir(owner, repoName))) { git =>
+          val repository = git.getRepository
+          val upload = new UploadPack(repository)
+          upload.upload(in, out, err)
+        }
+      }
+    }
+  }
+
+}
+
+class GitReceivePack(context: ServletContext, owner: String, repoName: String, baseUrl: String) extends GitCommand(context, owner, repoName)
+    with SystemSettingsService with RepositoryService with AccountService {
+
+  override protected def runTask(user: String)(implicit session: Session): Unit = {
+    getRepository(owner, repoName.replaceFirst("\\.wiki\\Z", ""), baseUrl).foreach { repositoryInfo =>
+      if(isWritableUser(user, repositoryInfo)){
+        using(Git.open(getRepositoryDir(owner, repoName))) { git =>
+          val repository = git.getRepository
+          val receive = new ReceivePack(repository)
+          if(!repoName.endsWith(".wiki")){
+            val hook = new CommitLogHook(owner, repoName, user, baseUrl)
+            receive.setPreReceiveHook(hook)
+            receive.setPostReceiveHook(hook)
+          }
+          receive.receive(in, out, err)
+        }
+      }
+    }
+  }
+
+}
+
+class GitCommandFactory(context: ServletContext, baseUrl: String) extends CommandFactory {
+  private val logger = LoggerFactory.getLogger(classOf[GitCommandFactory])
+
+  override def createCommand(command: String): Command = {
+    logger.debug(s"command: $command")
+    command match {
+      case GitCommand.CommandRegex("upload", owner, repoName) => new GitUploadPack(context, owner, repoName, baseUrl)
+      case GitCommand.CommandRegex("receive", owner, repoName) => new GitReceivePack(context, owner, repoName, baseUrl)
+      case _ => new UnknownCommand(command)
+    }
+  }
+}

src/main/scala/ssh/NoShell.scala

@@ -0,0 +1,62 @@
+package ssh
+
+import org.apache.sshd.common.Factory
+import org.apache.sshd.server.{Environment, ExitCallback, Command}
+import java.io.{OutputStream, InputStream}
+import org.eclipse.jgit.lib.Constants
+import service.SystemSettingsService
+
+class NoShell extends Factory[Command] with SystemSettingsService {
+  override def create(): Command = new Command() {
+    private var in: InputStream = null
+    private var out: OutputStream = null
+    private var err: OutputStream = null
+    private var callback: ExitCallback = null
+
+    override def start(env: Environment): Unit = {
+      val user = env.getEnv.get("USER")
+      val port = loadSystemSettings().sshPort.getOrElse(SystemSettingsService.DefaultSshPort)
+      val message =
+        """
+          | Welcome to
+          |   _____   _   _     ____                   _             _
+          |  / ____| (_) | |   |  _ \                 | |           | |
+          | | |  __   _  | |_  | |_) |  _   _    ___  | | __   ___  | |_
+          | | | |_ | | | | __| |  _ <  | | | |  / __| | |/ /  / _ \ | __|
+          | | |__| | | | | |_  | |_) | | |_| | | (__  |   <  |  __/ | |_
+          |  \_____| |_|  \__| |____/   \__,_|  \___| |_|\_\  \___|  \__|
+          |
+          | Successfully SSH Access.
+          | But interactive shell is disabled.
+          |
+          | Please use:
+          |
+          | git clone ssh://%s@GITBUCKET_HOST:%d/OWNER/REPOSITORY_NAME.git
+        """.stripMargin.format(user, port).replace("\n", "\r\n") + "\r\n"
+      err.write(Constants.encode(message))
+      err.flush()
+      in.close()
+      out.close()
+      err.close()
+      callback.onExit(127)
+    }
+
+    override def destroy(): Unit = {}
+
+    override def setInputStream(in: InputStream): Unit = {
+      this.in = in
+    }
+
+    override def setOutputStream(out: OutputStream): Unit = {
+      this.out = out
+    }
+
+    override def setErrorStream(err: OutputStream): Unit = {
+      this.err = err
+    }
+
+    override def setExitCallback(callback: ExitCallback): Unit = {
+      this.callback = callback
+    }
+  }
+}

src/main/scala/ssh/PublicKeyAuthenticator.scala

@@ -0,0 +1,23 @@
+package ssh
+
+import org.apache.sshd.server.PublickeyAuthenticator
+import org.apache.sshd.server.session.ServerSession
+import java.security.PublicKey
+import service.SshKeyService
+import servlet.Database
+import javax.servlet.ServletContext
+
+class PublicKeyAuthenticator(context: ServletContext) extends PublickeyAuthenticator with SshKeyService {
+
+  override def authenticate(username: String, key: PublicKey, session: ServerSession): Boolean = {
+    Database(context) withSession { implicit session =>
+      getPublicKeys(username).exists { sshKey =>
+        SshUtil.str2PublicKey(sshKey.publicKey) match {
+          case Some(publicKey) => key.equals(publicKey)
+          case _ => false
+        }
+      }
+    }
+  }
+
+}

src/main/scala/ssh/SshServerListener.scala

@@ -0,0 +1,70 @@
+package ssh
+
+import javax.servlet.{ServletContext, ServletContextEvent, ServletContextListener}
+import org.apache.sshd.server.keyprovider.SimpleGeneratorHostKeyProvider
+import org.slf4j.LoggerFactory
+import util.Directory
+import service.SystemSettingsService
+import java.util.concurrent.atomic.AtomicBoolean
+
+object SshServer {
+  private val logger = LoggerFactory.getLogger(SshServer.getClass)
+  private val server = org.apache.sshd.SshServer.setUpDefaultServer()
+  private val active = new AtomicBoolean(false)
+
+  private def configure(context: ServletContext, port: Int, baseUrl: String) = {
+    server.setPort(port)
+    server.setKeyPairProvider(new SimpleGeneratorHostKeyProvider(s"${Directory.GitBucketHome}/gitbucket.ser"))
+    server.setPublickeyAuthenticator(new PublicKeyAuthenticator(context))
+    server.setCommandFactory(new GitCommandFactory(context, baseUrl))
+    server.setShellFactory(new NoShell)
+  }
+
+  def start(context: ServletContext, port: Int, baseUrl: String) = {
+    if(active.compareAndSet(false, true)){
+      configure(context, port, baseUrl)
+      server.start()
+      logger.info(s"Start SSH Server Listen on ${server.getPort}")
+    }
+  }
+
+  def stop() = {
+    if(active.compareAndSet(true, false)){
+      server.stop(true)
+      logger.info("SSH Server is stopped.")
+    }
+  }
+
+  def isActive = active.get
+}
+
+/*
+ * Start a SSH Server Daemon
+ *
+ * How to use:
+ * git clone ssh://username@host_or_ip:29418/owner/repository_name.git
+ */
+class SshServerListener extends ServletContextListener with SystemSettingsService {
+
+  private val logger = LoggerFactory.getLogger(classOf[SshServerListener])
+
+  override def contextInitialized(sce: ServletContextEvent): Unit = {
+    val settings = loadSystemSettings()
+    if(settings.ssh){
+      settings.baseUrl match {
+        case None =>
+          logger.error("Could not start SshServer because the baseUrl is not configured.")
+        case Some(baseUrl) =>
+          SshServer.start(sce.getServletContext,
+            settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), baseUrl)
+      }
+    }
+  }
+
+  override def contextDestroyed(sce: ServletContextEvent): Unit = {
+    if(loadSystemSettings().ssh){
+      SshServer.stop()
+    }
+  }
+
+}

src/main/scala/ssh/SshUtil.scala

@@ -0,0 +1,36 @@
+package ssh
+
+import java.security.PublicKey
+import org.slf4j.LoggerFactory
+import org.apache.commons.codec.binary.Base64
+import org.eclipse.jgit.lib.Constants
+import org.apache.sshd.common.util.{KeyUtils, Buffer}
+
+object SshUtil {
+
+  private val logger = LoggerFactory.getLogger(SshUtil.getClass)
+
+  def str2PublicKey(key: String): Option[PublicKey] = {
+    // TODO RFC 4716 Public Key is not supported...
+    val parts = key.split(" ")
+    if (parts.size < 2) {
+      logger.debug(s"Invalid PublicKey Format: ${key}")
+      return None
+    }
+    try {
+      val encodedKey = parts(1)
+      val decode = Base64.decodeBase64(Constants.encodeASCII(encodedKey))
+      Some(new Buffer(decode).getRawPublicKey)
+    } catch {
+      case e: Throwable =>
+        logger.debug(e.getMessage, e)
+        None
+    }
+  }
+
+  def fingerPrint(key: String): Option[String] = str2PublicKey(key) match {
+    case Some(publicKey) => Some(KeyUtils.getFingerPrint(publicKey))
+    case None => None
+  }
+
+}

src/main/scala/util/Authenticator.scala

@@ -29,7 +29,7 @@ trait OneselfAuthenticator { self: ControllerBase =>
 /**
  * Allows only the repository owner and administrators.
  */
-trait OwnerAuthenticator { self: ControllerBase with RepositoryService =>
+trait OwnerAuthenticator { self: ControllerBase with RepositoryService with AccountService =>
   protected def ownerOnly(action: (RepositoryInfo) => Any) = { authenticate(action) }
   protected def ownerOnly[T](action: (T, RepositoryInfo) => Any) = (form: T) => { authenticate(action(form, _)) }
 
@@ -40,6 +40,9 @@ trait OwnerAuthenticator { self: ControllerBase with RepositoryService =>
           context.loginAccount match {
             case Some(x) if(x.isAdmin) => action(repository)
             case Some(x) if(repository.owner == x.userName) => action(repository)
+            case Some(x) if(getGroupMembers(repository.owner).exists { member =>
+              member.userName == x.userName && member.isManager == true
+            }) => action(repository)
             case _ => Unauthorized()
           }
         } getOrElse NotFound()
@@ -106,7 +109,7 @@ trait CollaboratorsAuthenticator { self: ControllerBase with RepositoryService =
 }
 
 /**
- * Allows only the repository owner and administrators.
+ * Allows only the repository owner (or manager for group repository) and administrators.
  */
 trait ReferrerAuthenticator { self: ControllerBase with RepositoryService =>
   protected def referrersOnly(action: (RepositoryInfo) => Any) = { authenticate(action) }
@@ -155,3 +158,24 @@ trait ReadableUsersAuthenticator { self: ControllerBase with RepositoryService =
     }
   }
 }
+
+/**
+ * Allows only the group managers.
+ */
+trait GroupManagerAuthenticator { self: ControllerBase with AccountService =>
+  protected def managersOnly(action: => Any) = { authenticate(action) }
+  protected def managersOnly[T](action: T => Any) = (form: T) => { authenticate(action(form)) }
+
+  private def authenticate(action: => Any) = {
+    {
+      defining(request.paths){ paths =>
+        context.loginAccount match {
+          case Some(x) if(getGroupMembers(paths(0)).exists { member =>
+            member.userName == x.userName && member.isManager
+          }) => action
+          case _ => Unauthorized()
+        }
+      }
+    }
+  }
+}

src/main/scala/util/ControlUtil.scala

@@ -16,7 +16,7 @@ object ControlUtil {
   def using[A <% { def close(): Unit }, B](resource: A)(f: A => B): B =
     try f(resource) finally {
       if(resource != null){
-        allCatch {
+        ignoring(classOf[Throwable]) {
           resource.close()
         }
       }
@@ -37,15 +37,4 @@ object ControlUtil {
   def using[T](treeWalk: TreeWalk)(f: TreeWalk => T): T =
     try f(treeWalk) finally treeWalk.release()
 
-
-//  def withTmpRefSpec[T](ref: RefSpec, git: Git)(f: RefSpec => T): T = {
-//    try {
-//      f(ref)
-//    } finally {
-//      val refUpdate = git.getRepository.updateRef(ref.getDestination)
-//      refUpdate.setForceUpdate(true)
-//      refUpdate.delete()
-//    }
-//  }
-
 }

src/main/scala/util/Directory.scala

@@ -34,19 +34,9 @@ object Directory {
 
   val DatabaseHome = s"${GitBucketHome}/data"
 
-  /**
+  val PluginHome = s"${GitBucketHome}/plugins"
-   * Repository names of the specified user.
+
-   */
+  val TemporaryHome = s"${GitBucketHome}/tmp"
-  def getRepositories(owner: String): List[String] =
-    defining(new File(s"${RepositoryHome}/${owner}")){ dir =>
-      if(dir.exists){
-        dir.listFiles.filter { file =>
-          file.isDirectory && !file.getName.endsWith(".wiki.git")
-        }.map(_.getName.replaceFirst("\\.git$", "")).toList
-      } else {
-        Nil
-      }
-    }
 
   /**
    * Substance directory of the repository.
@@ -54,16 +44,33 @@ object Directory {
   def getRepositoryDir(owner: String, repository: String): File =
     new File(s"${RepositoryHome}/${owner}/${repository}.git")
 
+  /**
+   * Directory for files which are attached to issue.
+   */
+  def getAttachedDir(owner: String, repository: String): File =
+    new File(s"${RepositoryHome}/${owner}/${repository}/comments")
+
   /**
    * Directory for uploaded files by the specified user.
    */
   def getUserUploadDir(userName: String): File = new File(s"${GitBucketHome}/data/${userName}/files")
 
+  /**
+   * Root of temporary directories for the upload file.
+   */
+  def getTemporaryDir(sessionId: String): File =
+    new File(s"${TemporaryHome}/_upload/${sessionId}")
+
   /**
    * Root of temporary directories for the specified repository.
    */
   def getTemporaryDir(owner: String, repository: String): File =
-    new File(s"${GitBucketHome}/tmp/${owner}/${repository}")
+    new File(s"${TemporaryHome}/${owner}/${repository}")
+
+  /**
+   * Root of plugin cache directory. Plugin repositories are cloned into this directory.
+   */
+  def getPluginCacheDir(): File = new File(s"${TemporaryHome}/_plugins")
 
   /**
    * Temporary directory which is used to create an archive to download repository contents.

src/main/scala/util/FileUtil.scala

@@ -4,6 +4,7 @@ import org.apache.commons.io.FileUtils
 import java.net.URLConnection
 import java.io.File
 import util.ControlUtil._
+import scala.util.Random
 
 object FileUtil {
 
@@ -31,27 +32,7 @@ object FileUtil {
 
   def isText(content: Array[Byte]): Boolean = !content.contains(0)
 
-//  def createZipFile(dest: File, dir: File): Unit = {
+  def generateFileId: String = System.currentTimeMillis + Random.alphanumeric.take(10).mkString
-//    def addDirectoryToZip(out: ZipArchiveOutputStream, dir: File, path: String): Unit = {
-//      dir.listFiles.map { file =>
-//        if(file.isFile){
-//          out.putArchiveEntry(new ZipArchiveEntry(path + "/" + file.getName))
-//          out.write(FileUtils.readFileToByteArray(file))
-//          out.closeArchiveEntry
-//        } else if(file.isDirectory){
-//          addDirectoryToZip(out, file, path + "/" + file.getName)
-//        }
-//      }
-//    }
-//
-//    using(new ZipArchiveOutputStream(dest)){ out =>
-//      addDirectoryToZip(out, dir, dir.getName)
-//    }
-//  }
-
-  def getFileName(path: String): String = defining(path.lastIndexOf('/')){ i =>
-    if(i >= 0) path.substring(i + 1) else path
-  }
 
   def getExtension(name: String): String =
     name.lastIndexOf('.') match {

src/main/scala/util/Implicits.scala

@@ -2,6 +2,8 @@ package util
 
 import scala.util.matching.Regex
 import scala.util.control.Exception._
+import slick.jdbc.JdbcBackend
+import servlet.Database
 import javax.servlet.http.{HttpSession, HttpServletRequest}
 
 /**
@@ -9,6 +11,9 @@ import javax.servlet.http.{HttpSession, HttpServletRequest}
  */
 object Implicits {
 
+  // Convert to slick session.
+  implicit def request2Session(implicit request: HttpServletRequest): JdbcBackend#Session = Database.getSession(request)
+
   implicit class RichSeq[A](seq: Seq[A]) {
 
     def splitWith(condition: (A, A) => Boolean): Seq[Seq[A]] = split(seq)(condition)

src/main/scala/util/JDBCUtil.scala

@@ -0,0 +1,55 @@
+package util
+
+import java.sql._
+import util.ControlUtil._
+import scala.collection.mutable.ListBuffer
+
+/**
+ * Provides implicit class which extends java.sql.Connection.
+ * This is used in automatic migration in [[servlet.AutoUpdateListener]].
+ */
+object JDBCUtil {
+
+  implicit class RichConnection(conn: Connection){
+
+    def update(sql: String, params: Any*): Int = {
+      execute(sql, params: _*){ stmt =>
+        stmt.executeUpdate()
+      }
+    }
+
+    def select[T](sql: String, params: Any*)(f: ResultSet => T): Seq[T] = {
+      execute(sql, params: _*){ stmt =>
+        using(stmt.executeQuery()){ rs =>
+          val list = new ListBuffer[T]
+          while(rs.next){
+            list += f(rs)
+          }
+          list.toSeq
+        }
+      }
+    }
+
+    def selectInt(sql: String, params: Any*): Int = {
+      execute(sql, params: _*){ stmt =>
+        using(stmt.executeQuery()){ rs =>
+          if(rs.next) rs.getInt(1) else 0
+        }
+      }
+    }
+
+    private def execute[T](sql: String, params: Any*)(f: (PreparedStatement) => T): T = {
+      using(conn.prepareStatement(sql)){ stmt =>
+        params.zipWithIndex.foreach { case (p, i) =>
+          p match {
+            case x: Int    => stmt.setInt(i + 1, x)
+            case x: String => stmt.setString(i + 1, x)
+          }
+        }
+        f(stmt)
+      }
+    }
+
+  }
+
+}

src/main/scala/util/JGitUtil.scala

@@ -4,6 +4,7 @@ import org.eclipse.jgit.api.Git
 import util.Directory._
 import util.StringUtil._
 import util.ControlUtil._
+import scala.annotation.tailrec
 import scala.collection.JavaConverters._
 import org.eclipse.jgit.lib._
 import org.eclipse.jgit.revwalk._
@@ -11,17 +12,20 @@ import org.eclipse.jgit.revwalk.filter._
 import org.eclipse.jgit.treewalk._
 import org.eclipse.jgit.treewalk.filter._
 import org.eclipse.jgit.diff.DiffEntry.ChangeType
-import org.eclipse.jgit.errors.MissingObjectException
+import org.eclipse.jgit.errors.{ConfigInvalidException, MissingObjectException}
 import java.util.Date
-import org.eclipse.jgit.api.errors.NoHeadException
+import org.eclipse.jgit.api.errors.{JGitInternalException, InvalidRefNameException, RefAlreadyExistsException, NoHeadException}
 import service.RepositoryService
 import org.eclipse.jgit.dircache.DirCacheEntry
+import org.slf4j.LoggerFactory
 
 /**
  * Provides complex JGit operations.
  */
 object JGitUtil {
 
+  private val logger = LoggerFactory.getLogger(JGitUtil.getClass)
+
   /**
    * The repository data.
    *
@@ -32,7 +36,11 @@ object JGitUtil {
    * @param branchList the list of branch names
    * @param tags the list of tags
    */
-  case class RepositoryInfo(owner: String, name: String, url: String, commitCount: Int, branchList: List[String], tags: List[TagInfo])
+  case class RepositoryInfo(owner: String, name: String, url: String, commitCount: Int, branchList: List[String], tags: List[TagInfo]){
+    def this(owner: String, name: String, baseUrl: String) = {
+      this(owner, name, s"${baseUrl}/git/${owner}/${name}.git", 0, Nil, Nil)
+    }
+  }
 
   /**
    * The file data for the file list of the repository viewer.
@@ -40,49 +48,55 @@ object JGitUtil {
    * @param id the object id
    * @param isDirectory whether is it directory
    * @param name the file (or directory) name
-   * @param time the last modified time
    * @param message the last commit message
    * @param commitId the last commit id
-   * @param committer the last committer name
+   * @param time the last modified time
+   * @param author the last committer name
    * @param mailAddress the committer's mail address
+   * @param linkUrl the url of submodule
    */
-  case class FileInfo(id: ObjectId, isDirectory: Boolean, name: String, time: Date, message: String, commitId: String,
+  case class FileInfo(id: ObjectId, isDirectory: Boolean, name: String, message: String, commitId: String,
-                      committer: String, mailAddress: String)
+                      time: Date, author: String, mailAddress: String, linkUrl: Option[String])
 
   /**
    * The commit data.
    *
    * @param id the commit id
-   * @param time the commit time
-   * @param committer  the committer name
-   * @param mailAddress the mail address of the committer
    * @param shortMessage the short message
    * @param fullMessage the full message
    * @param parents the list of parent commit id
+   * @param authorTime the author time
+   * @param authorName the author name
+   * @param authorEmailAddress the mail address of the author
+   * @param commitTime the commit time
+   * @param committerName  the committer name
+   * @param committerEmailAddress the mail address of the committer
    */
-  case class CommitInfo(id: String, time: Date, committer: String, mailAddress: String,
+  case class CommitInfo(id: String, shortMessage: String, fullMessage: String, parents: List[String],
-                        shortMessage: String, fullMessage: String, parents: List[String]){
+                        authorTime: Date, authorName: String, authorEmailAddress: String,
+                        commitTime: Date, committerName: String, committerEmailAddress: String){
     
     def this(rev: org.eclipse.jgit.revwalk.RevCommit) = this(
         rev.getName,
-        rev.getCommitterIdent.getWhen,
-        rev.getCommitterIdent.getName,
-        rev.getCommitterIdent.getEmailAddress,
         rev.getShortMessage,
         rev.getFullMessage,
-        rev.getParents().map(_.name).toList)
+        rev.getParents().map(_.name).toList,
+        rev.getAuthorIdent.getWhen,
+        rev.getAuthorIdent.getName,
+        rev.getAuthorIdent.getEmailAddress,
+        rev.getCommitterIdent.getWhen,
+        rev.getCommitterIdent.getName,
+        rev.getCommitterIdent.getEmailAddress)
 
-    val summary = defining(fullMessage.trim.indexOf("\n")){ i =>
+    val summary = getSummaryMessage(fullMessage, shortMessage)
-      defining(if(i >= 0) fullMessage.trim.substring(0, i).trim else fullMessage){ firstLine =>
-        if(firstLine.length > shortMessage.length) shortMessage else firstLine
-      }
-    }
 
     val description = defining(fullMessage.trim.indexOf("\n")){ i =>
       if(i >= 0){
         Some(fullMessage.trim.substring(i).trim)
       } else None
     }
+
+    def isDifferentFromAuthor: Boolean = authorName != committerName || authorEmailAddress != committerEmailAddress
   }
 
   case class DiffInfo(changeType: ChangeType, oldPath: String, newPath: String, oldContent: Option[String], newContent: Option[String])
@@ -92,8 +106,14 @@ object JGitUtil {
    *
    * @param viewType "image", "large" or "other"
    * @param content the string content
+   * @param charset the character encoding
    */
-  case class ContentInfo(viewType: String, content: Option[String])
+  case class ContentInfo(viewType: String, content: Option[String], charset: Option[String]){
+    /**
+     * the line separator of this content ("LF" or "CRLF")
+     */
+    val lineSeparator: String = if(content.exists(_.indexOf("\r\n") >= 0)) "CRLF" else "LF"
+  }
 
   /**
    * The tag data.
@@ -104,6 +124,15 @@ object JGitUtil {
    */
   case class TagInfo(name: String, time: Date, id: String)
 
+  /**
+   * The submodule data
+   *
+   * @param name the module name
+   * @param path the path in the repository
+   * @param url the repository url of this module
+   */
+  case class SubmoduleInfo(name: String, path: String, url: String)
+
   /**
    * Returns RevCommit from the commit or tag id.
    * 
@@ -128,7 +157,7 @@ object JGitUtil {
     using(Git.open(getRepositoryDir(owner, repository))){ git =>
       try {
         // get commit count
-        val commitCount = git.log.all.call.iterator.asScala.map(_ => 1).take(1000).sum
+        val commitCount = git.log.all.call.iterator.asScala.map(_ => 1).take(10001).sum
 
         RepositoryInfo(
           owner, repository, s"${baseUrl}/git/${owner}/${repository}.git",
@@ -136,12 +165,12 @@ object JGitUtil {
           commitCount,
           // branches
           git.branchList.call.asScala.map { ref =>
-            ref.getName.replaceFirst("^refs/heads/", "")
+            ref.getName.stripPrefix("refs/heads/")
           }.toList,
           // tags
           git.tagList.call.asScala.map { ref =>
             val revCommit = getRevCommitFromId(git, ref.getObjectId)
-            TagInfo(ref.getName.replaceFirst("^refs/tags/", ""), revCommit.getCommitterIdent.getWhen, revCommit.getName)
+            TagInfo(ref.getName.stripPrefix("refs/tags/"), revCommit.getCommitterIdent.getWhen, revCommit.getName)
           }.toList
         )
       } catch {
@@ -162,55 +191,73 @@ object JGitUtil {
    * @return HTML of the file list
    */
   def getFileList(git: Git, revision: String, path: String = "."): List[FileInfo] = {
-    val list = new scala.collection.mutable.ListBuffer[(ObjectId, FileMode, String, String)]
+    var list = new scala.collection.mutable.ListBuffer[(ObjectId, FileMode, String, String, Option[String])]
 
     using(new RevWalk(git.getRepository)){ revWalk =>
       val objectId  = git.getRepository.resolve(revision)
       val revCommit = revWalk.parseCommit(objectId)
 
-      using(new TreeWalk(git.getRepository)){ treeWalk =>
+      val treeWalk = if (path == ".") {
+        val treeWalk = new TreeWalk(git.getRepository)
         treeWalk.addTree(revCommit.getTree)
-        if(path != "."){
+        treeWalk
-          treeWalk.setRecursive(true)
-          treeWalk.setFilter(new TreeFilter(){
-
-            var stopRecursive = false
-
-            def include(walker: TreeWalk): Boolean = {
-              val targetPath = walker.getPathString
-              if((path + "/").startsWith(targetPath)){
-                true
-              } else if(targetPath.startsWith(path + "/") && targetPath.substring(path.length + 1).indexOf("/") < 0){
-                stopRecursive = true
-                treeWalk.setRecursive(false)
-                true
       } else {
-                false
+        val treeWalk = TreeWalk.forPath(git.getRepository, path, revCommit.getTree)
-              }
+        treeWalk.enterSubtree()
+        treeWalk
       }
 
-            def shouldBeRecursive(): Boolean = !stopRecursive
+      using(treeWalk) { treeWalk =>
-
-            override def clone: TreeFilter = return this
-          })
-        }
         while (treeWalk.next()) {
-          list.append((treeWalk.getObjectId(0), treeWalk.getFileMode(0), treeWalk.getPathString, treeWalk.getNameString))
+          // submodule
+          val linkUrl = if(treeWalk.getFileMode(0) == FileMode.GITLINK){
+            getSubmodules(git, revCommit.getTree).find(_.path == treeWalk.getPathString).map(_.url)
+          } else None
+
+          list.append((treeWalk.getObjectId(0), treeWalk.getFileMode(0), treeWalk.getPathString, treeWalk.getNameString, linkUrl))
+        }
+
+        list.transform(tuple =>
+          if (tuple._2 != FileMode.TREE)
+            tuple
+          else
+            simplifyPath(tuple)
+        )
+
+        @tailrec
+        def simplifyPath(tuple: (ObjectId, FileMode, String, String, Option[String])): (ObjectId, FileMode, String, String, Option[String]) = {
+          val list = new scala.collection.mutable.ListBuffer[(ObjectId, FileMode, String, String, Option[String])]
+          using(new TreeWalk(git.getRepository)) { walk =>
+            walk.addTree(tuple._1)
+            while (walk.next() && list.size < 2) {
+              val linkUrl = if (walk.getFileMode(0) == FileMode.GITLINK) {
+                getSubmodules(git, revCommit.getTree).find(_.path == walk.getPathString).map(_.url)
+              } else None
+              list.append((walk.getObjectId(0), walk.getFileMode(0), tuple._3 + "/" + walk.getPathString, tuple._4 + "/" + walk.getNameString, linkUrl))
+            }
+          }
+          if (list.size != 1 || list.exists(_._2 != FileMode.TREE))
+            tuple
+          else
+            simplifyPath(list(0))
         }
       }
     }
 
     val commits = getLatestCommitFromPaths(git, list.toList.map(_._3), revision)
-    list.map { case (objectId, fileMode, path, name) =>
+    list.map { case (objectId, fileMode, path, name, linkUrl) =>
+      defining(commits(path)){ commit =>
         FileInfo(
           objectId,
-        fileMode == FileMode.TREE,
+          fileMode == FileMode.TREE || fileMode == FileMode.GITLINK,
           name,
-        commits(path).getCommitterIdent.getWhen,
+          getSummaryMessage(commit.getFullMessage, commit.getShortMessage),
-        commits(path).getShortMessage,
+          commit.getName,
-        commits(path).getName,
+          commit.getAuthorIdent.getWhen,
-        commits(path).getCommitterIdent.getName,
+          commit.getAuthorIdent.getName,
-        commits(path).getCommitterIdent.getEmailAddress)
+          commit.getAuthorIdent.getEmailAddress,
+          linkUrl)
+      }
     }.sortWith { (file1, file2) =>
       (file1.isDirectory, file2.isDirectory) match {
         case (true , false) => true
@@ -220,6 +267,17 @@ object JGitUtil {
     }.toList
   }
 
+  /**
+   * Returns the first line of the commit message.
+   */
+  private def getSummaryMessage(fullMessage: String, shortMessage: String): String = {
+    defining(fullMessage.trim.indexOf("\n")){ i =>
+      defining(if(i >= 0) fullMessage.trim.substring(0, i).trim else fullMessage){ firstLine =>
+        if(firstLine.length > shortMessage.length) shortMessage else firstLine
+      }
+    }
+  }
+
   /**
    * Returns the commit list of the specified branch.
    * 
@@ -325,27 +383,6 @@ object JGitUtil {
     }.toMap
   }
 
-  /**
-   * Get object content of the given id as String from the Git repository.
-   * 
-   * @param git the Git object
-   * @param id the object id
-   * @param large if false then returns None for the large file
-   * @return the object or None if object does not exist
-   */
-  def getContent(git: Git, id: ObjectId, large: Boolean): Option[Array[Byte]] = try {
-    val loader = git.getRepository.getObjectDatabase.open(id)
-    if(large == false && FileUtil.isLarge(loader.getSize)){
-      None
-    } else {
-      using(git.getRepository.getObjectDatabase){ db =>
-        Some(db.open(id).getBytes)
-      }
-    }
-  } catch {
-    case e: MissingObjectException => None
-  }
-
   /**
    * Returns the tuple of diff of the given commit and the previous commit id.
    */
@@ -364,7 +401,12 @@ object JGitUtil {
 
       if(commits.length >= 2){
         // not initial commit
-        val oldCommit = commits(1)
+        val oldCommit = if(revCommit.getParentCount >= 2) {
+          // merge commit
+          revCommit.getParents.head
+        } else {
+          commits(1)
+        }
         (getDiffs(git, oldCommit.getName, id, fetchContent), Some(oldCommit.getName))
 
       } else {
@@ -377,7 +419,7 @@ object JGitUtil {
               DiffInfo(ChangeType.ADD, null, treeWalk.getPathString, None, None)
             } else {
               DiffInfo(ChangeType.ADD, null, treeWalk.getPathString, None,
-                JGitUtil.getContent(git, treeWalk.getObjectId(0), false).filter(FileUtil.isText).map(convertFromByteArray))
+                JGitUtil.getContentFromId(git, treeWalk.getObjectId(0), false).filter(FileUtil.isText).map(convertFromByteArray))
             }))
           }
           (buffer.toList, None)
@@ -400,8 +442,8 @@ object JGitUtil {
         DiffInfo(diff.getChangeType, diff.getOldPath, diff.getNewPath, None, None)
       } else {
         DiffInfo(diff.getChangeType, diff.getOldPath, diff.getNewPath,
-          JGitUtil.getContent(git, diff.getOldId.toObjectId, false).filter(FileUtil.isText).map(convertFromByteArray),
+          JGitUtil.getContentFromId(git, diff.getOldId.toObjectId, false).filter(FileUtil.isText).map(convertFromByteArray),
-          JGitUtil.getContent(git, diff.getNewId.toObjectId, false).filter(FileUtil.isText).map(convertFromByteArray))
+          JGitUtil.getContentFromId(git, diff.getNewId.toObjectId, false).filter(FileUtil.isText).map(convertFromByteArray))
       }
     }.toList
   }
@@ -465,6 +507,17 @@ object JGitUtil {
     }.find(_._1 != null)
   }
 
+  def createBranch(git: Git, fromBranch: String, newBranch: String) = {
+    try {
+      git.branchCreate().setStartPoint(fromBranch).setName(newBranch).call()
+      Right("Branch created.")
+    } catch {
+      case e: RefAlreadyExistsException => Left("Sorry, that branch already exists.")
+      // JGitInternalException occurs when new branch name is 'a' and the branch whose name is 'a/*' exists.
+      case _: InvalidRefNameException | _: JGitInternalException => Left("Sorry, that name is invalid.")
+    }
+  }
+
   def createDirCacheEntry(path: String, mode: FileMode, objectId: ObjectId): DirCacheEntry = {
     val entry = new DirCacheEntry(path)
     entry.setFileMode(mode)
@@ -473,7 +526,7 @@ object JGitUtil {
   }
 
   def createNewCommit(git: Git, inserter: ObjectInserter, headId: AnyObjectId, treeId: AnyObjectId,
-                              fullName: String, mailAddress: String, message: String): String = {
+                      ref: String, fullName: String, mailAddress: String, message: String): ObjectId = {
     val newCommit = new CommitBuilder()
     newCommit.setCommitter(new PersonIdent(fullName, mailAddress))
     newCommit.setAuthor(new PersonIdent(fullName, mailAddress))
@@ -487,11 +540,149 @@ object JGitUtil {
     inserter.flush()
     inserter.release()
 
-    val refUpdate = git.getRepository.updateRef(Constants.HEAD)
+    val refUpdate = git.getRepository.updateRef(ref)
     refUpdate.setNewObjectId(newHeadId)
     refUpdate.update()
 
-    newHeadId.getName
+    newHeadId
+  }
+
+  /**
+   * Read submodule information from .gitmodules
+   */
+  def getSubmodules(git: Git, tree: RevTree): List[SubmoduleInfo] = {
+    val repository = git.getRepository
+    getContentFromPath(git, tree, ".gitmodules", true).map { bytes =>
+      (try {
+        val config = new BlobBasedConfig(repository.getConfig(), bytes)
+        config.getSubsections("submodule").asScala.map { module =>
+          val path = config.getString("submodule", module, "path")
+          val url  = config.getString("submodule", module, "url")
+          SubmoduleInfo(module, path, url)
+        }
+      } catch {
+        case e: ConfigInvalidException => {
+          logger.error("Failed to load .gitmodules file for " + repository.getDirectory(), e)
+          Nil
+        }
+      }).toList
+    } getOrElse Nil
+	}
+
+  /**
+   * Get object content of the given path as byte array from the Git repository.
+   *
+   * @param git the Git object
+   * @param revTree the rev tree
+   * @param path the path
+   * @param fetchLargeFile if false then returns None for the large file
+   * @return the byte array of content or None if object does not exist
+   */
+  def getContentFromPath(git: Git, revTree: RevTree, path: String, fetchLargeFile: Boolean): Option[Array[Byte]] = {
+    @scala.annotation.tailrec
+    def getPathObjectId(path: String, walk: TreeWalk): Option[ObjectId] = walk.next match {
+      case true if(walk.getPathString == path) => Some(walk.getObjectId(0))
+      case true  => getPathObjectId(path, walk)
+      case false => None
+    }
+
+    using(new TreeWalk(git.getRepository)){ treeWalk =>
+      treeWalk.addTree(revTree)
+      treeWalk.setRecursive(true)
+      getPathObjectId(path, treeWalk)
+    } flatMap { objectId =>
+      getContentFromId(git, objectId, fetchLargeFile)
+    }
+  }
+
+  def getContentInfo(git: Git, path: String, objectId: ObjectId): ContentInfo = {
+    // Viewer
+    val large  = FileUtil.isLarge(git.getRepository.getObjectDatabase.open(objectId).getSize)
+    val viewer = if(FileUtil.isImage(path)) "image" else if(large) "large" else "other"
+    val bytes  = if(viewer == "other") JGitUtil.getContentFromId(git, objectId, false) else None
+
+    if(viewer == "other"){
+      if(bytes.isDefined && FileUtil.isText(bytes.get)){
+        // text
+        ContentInfo("text", Some(StringUtil.convertFromByteArray(bytes.get)), Some(StringUtil.detectEncoding(bytes.get)))
+      } else {
+        // binary
+        ContentInfo("binary", None, None)
+      }
+    } else {
+      // image or large
+      ContentInfo(viewer, None, None)
+    }
+  }
+
+  /**
+   * Get object content of the given object id as byte array from the Git repository.
+   *
+   * @param git the Git object
+   * @param id the object id
+   * @param fetchLargeFile if false then returns None for the large file
+   * @return the byte array of content or None if object does not exist
+   */
+  def getContentFromId(git: Git, id: ObjectId, fetchLargeFile: Boolean): Option[Array[Byte]] = try {
+    val loader = git.getRepository.getObjectDatabase.open(id)
+    if(fetchLargeFile == false && FileUtil.isLarge(loader.getSize)){
+      None
+    } else {
+      using(git.getRepository.getObjectDatabase){ db =>
+        Some(db.open(id).getBytes)
+      }
+    }
+  } catch {
+    case e: MissingObjectException => None
+  }
+
+  /**
+   * Returns all commit id in the specified repository.
+   */
+  def getAllCommitIds(git: Git): Seq[String] = if(isEmpty(git)) {
+    Nil
+  } else {
+    val existIds = new scala.collection.mutable.ListBuffer[String]()
+    val i = git.log.all.call.iterator
+    while(i.hasNext){
+      existIds += i.next.name
+    }
+    existIds.toSeq
+  }
+
+  def processTree(git: Git, id: ObjectId)(f: (String, CanonicalTreeParser) => Unit) = {
+    using(new RevWalk(git.getRepository)){ revWalk =>
+      using(new TreeWalk(git.getRepository)){ treeWalk =>
+        val index = treeWalk.addTree(revWalk.parseTree(id))
+        treeWalk.setRecursive(true)
+        while(treeWalk.next){
+          f(treeWalk.getPathString, treeWalk.getTree(index, classOf[CanonicalTreeParser]))
+        }
+      }
+    }
+  }
+
+  /**
+   * Returns the identifier of the root commit (or latest merge commit) of the specified branch.
+   */
+  def getForkedCommitId(oldGit: Git, newGit: Git,
+                        userName: String, repositoryName: String, branch: String,
+                        requestUserName: String, requestRepositoryName: String, requestBranch: String): String =
+    defining(getAllCommitIds(oldGit)){ existIds =>
+      getCommitLogs(newGit, requestBranch, true) { commit =>
+        existIds.contains(commit.name) && getBranchesOfCommit(oldGit, commit.getName).contains(branch)
+      }.head.id
+    }
+
+  /**
+   * Returns the last modified commit of specified path
+   * @param git the Git object
+   * @param startCommit the search base commit id
+   * @param path the path of target file or directory
+   * @return the last modified commit of specified path
+   */
+  def getLastModifiedCommit(git: Git, startCommit: RevCommit, path: String): RevCommit = {
+    return git.log.add(startCommit).addPath(path).setMaxCount(1).call.iterator.next
   }
 
 }

src/main/scala/util/Keys.scala

@@ -61,6 +61,11 @@ object Keys {
    */
   object Request {
 
+    /**
+     * Request key for the Slick Session.
+     */
+    val DBSession = "DB_SESSION"
+
     /**
      * Request key for the Ajax request flag.
      */

src/main/scala/util/LDAPUtil.scala

@@ -7,6 +7,7 @@ import java.security.Security
 import org.slf4j.LoggerFactory
 import service.SystemSettingsService.Ldap
 import scala.annotation.tailrec
+import model.Account
 
 /**
  * Utility for LDAP authentication.
@@ -16,6 +17,26 @@ object LDAPUtil {
   private val LDAP_VERSION: Int = LDAPConnection.LDAP_V3
   private val logger = LoggerFactory.getLogger(getClass().getName())
 
+  private val LDAP_DUMMY_MAL = "@ldap-devnull"
+
+  /**
+   * Returns true if mail address ends with "@ldap-devnull"
+   */
+  def isDummyMailAddress(account: Account): Boolean = {
+    account.mailAddress.endsWith(LDAP_DUMMY_MAL)
+  }
+
+  /**
+   * Creates dummy address (userName@ldap-devnull) for LDAP login.
+   *
+   * If  mail address is not managed in LDAP server, GitBucket stores this dummy address in first LDAP login.
+   * GitBucket does not send any mails to this dummy address. And these users must input their mail address
+   * at the first step after LDAP authentication.
+   */
+  def createDummyMailAddress(userName: String): String = {
+    userName + LDAP_DUMMY_MAL
+  }
+
   /**
    * Try authentication by LDAP using given configuration.
    * Returns Right(LDAPUserInfo) if authentication is successful, otherwise  Left(errorMessage).
@@ -30,7 +51,7 @@ object LDAPUtil {
       keystore = ldapSettings.keystore.getOrElse(""),
       error    = "System LDAP authentication failed."
     ){ conn =>
-      findUser(conn, userName, ldapSettings.baseDN, ldapSettings.userNameAttribute) match {
+      findUser(conn, userName, ldapSettings.baseDN, ldapSettings.userNameAttribute, ldapSettings.additionalFilterCondition) match {
         case Some(userDN) => userAuthentication(ldapSettings, userDN, userName, password)
         case None         => Left("User does not exist.")
       }
@@ -47,17 +68,33 @@ object LDAPUtil {
       keystore = ldapSettings.keystore.getOrElse(""),
       error    = "User LDAP Authentication Failed."
     ){ conn =>
-      findMailAddress(conn, userDN, ldapSettings.mailAttribute) match {
+      if(ldapSettings.mailAttribute.getOrElse("").isEmpty) {
-        case Some(mailAddress) => Right(LDAPUserInfo(
+        Right(LDAPUserInfo(
           userName    = userName,
           fullName    = ldapSettings.fullNameAttribute.flatMap { fullNameAttribute =>
-            findFullName(conn, userDN, fullNameAttribute)
+            findFullName(conn, userDN, ldapSettings.userNameAttribute, userName, fullNameAttribute)
+          }.getOrElse(userName),
+          mailAddress = createDummyMailAddress(userName)))
+      } else {
+        findMailAddress(conn, userDN, ldapSettings.userNameAttribute, userName, ldapSettings.mailAttribute.get) match {
+          case Some(mailAddress) => Right(LDAPUserInfo(
+            userName    = getUserNameFromMailAddress(userName),
+            fullName    = ldapSettings.fullNameAttribute.flatMap { fullNameAttribute =>
+              findFullName(conn, userDN, ldapSettings.userNameAttribute, userName, fullNameAttribute)
             }.getOrElse(userName),
             mailAddress = mailAddress))
           case None => Left("Can't find mail address.")
         }
       }
     }
+  }
+
+  private def getUserNameFromMailAddress(userName: String): String = {
+    (userName.indexOf('@') match {
+      case i if i >= 0 => userName.substring(0, i)
+      case i           => userName
+    }).replaceAll("[^a-zA-Z0-9\\-_.]", "").replaceAll("^[_\\-]", "")
+  }
 
   private def bind[A](host: String, port: Int, dn: String, password: String, tls: Boolean, keystore: String, error: String)
                   (f: LDAPConnection => Either[String, A]): Either[String, A] = {
@@ -105,7 +142,7 @@ object LDAPUtil {
   /**
    * Search a specified user and returns userDN if exists.
    */
-  private def findUser(conn: LDAPConnection, userName: String, baseDN: String, userNameAttribute: String): Option[String] = {
+  private def findUser(conn: LDAPConnection, userName: String, baseDN: String, userNameAttribute: String, additionalFilterCondition: Option[String]): Option[String] = {
     @tailrec
     def getEntries(results: LDAPSearchResults, entries: List[Option[LDAPEntry]] = Nil): List[LDAPEntry] = {
       if(results.hasMore){
@@ -118,20 +155,26 @@ object LDAPUtil {
         entries.flatten
       }
     }
-    getEntries(conn.search(baseDN, LDAPConnection.SCOPE_SUB, userNameAttribute + "=" + userName, null, false)).collectFirst {
+
+    val filterCond = additionalFilterCondition.getOrElse("") match {
+      case "" => userNameAttribute + "=" + userName
+      case x => "(&(" + x + ")(" + userNameAttribute + "=" + userName + "))"
+    }
+
+    getEntries(conn.search(baseDN, LDAPConnection.SCOPE_SUB, filterCond, null, false)).collectFirst {
       case x => x.getDN
     }
   }
 
-  private def findMailAddress(conn: LDAPConnection, userDN: String, mailAttribute: String): Option[String] =
+  private def findMailAddress(conn: LDAPConnection, userDN: String, userNameAttribute: String, userName: String, mailAttribute: String): Option[String] =
-    defining(conn.search(userDN, LDAPConnection.SCOPE_BASE, null, Array[String](mailAttribute), false)){ results =>
+    defining(conn.search(userDN, LDAPConnection.SCOPE_BASE, userNameAttribute + "=" + userName, Array[String](mailAttribute), false)){ results =>
       if(results.hasMore) {
         Option(results.next.getAttribute(mailAttribute)).map(_.getStringValue)
       } else None
     }
 
-  private def findFullName(conn: LDAPConnection, userDN: String, nameAttribute: String): Option[String] =
+  private def findFullName(conn: LDAPConnection, userDN: String, userNameAttribute: String, userName: String, nameAttribute: String): Option[String] =
-    defining(conn.search(userDN, LDAPConnection.SCOPE_BASE, null, Array[String](nameAttribute), false)){ results =>
+    defining(conn.search(userDN, LDAPConnection.SCOPE_BASE, userNameAttribute + "=" + userName, Array[String](nameAttribute), false)){ results =>
       if(results.hasMore) {
         Option(results.next.getAttribute(nameAttribute)).map(_.getStringValue)
       } else None